메뉴 건너뛰기




Volumn 173, Issue 1, 2010, Pages 85-97

Development and characterization of tomato SSR markers from genomic sequences of anchored BAC clones on chromosome 6

Author keywords

Bacterial artificial chromosome; Genetic diversity; Linkage map; Simple sequence repeats; Solanum lycopersicum

Indexed keywords

BACTERIA (MICROORGANISMS); LYCOPERSICON ESCULENTUM; MAGNOLIOPHYTA; SOLANACEAE; SOLANUM;

EID: 77953324194     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0125-z     Document Type: Article
Times cited : (26)

References (50)
  • 1
    • 0038530949 scopus 로고    scopus 로고
    • The heat-stable root-knot nematode resistance gene Mi-9 from Lycopersicon peruvianum is localized on the short arm of chromosome 6
    • Ammiraju JSS, Veremis JC, Huang X, Roberts PA, Kaloshian I (2003) The heat-stable root-knot nematode resistance gene Mi-9 from Lycopersicon peruvianum is localized on the short arm of chromosome 6. Theor Appl Genet 106(3): 478-484.
    • (2003) Theor Appl Genet , vol.106 , Issue.3 , pp. 478-484
    • Ammiraju, J.S.S.1    Veremis, J.C.2    Huang, X.3    Roberts, P.A.4    Kaloshian, I.5
  • 2
    • 0033150329 scopus 로고    scopus 로고
    • Long tomato microsatellites are predominantly associated with centromeric regions
    • Areshchenkova T, Ganal MW (1999) Long tomato microsatellites are predominantly associated with centromeric regions. Genome 42: 536-544.
    • (1999) Genome , vol.42 , pp. 536-544
    • Areshchenkova, T.1    Ganal, M.W.2
  • 3
    • 0036935201 scopus 로고    scopus 로고
    • Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources
    • Areshchenkova T, Ganal MW (2002) Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources. Theor Appl Genet 104: 229-235.
    • (2002) Theor Appl Genet , vol.104 , pp. 229-235
    • Areshchenkova, T.1    Ganal, M.W.2
  • 4
    • 77953321458 scopus 로고    scopus 로고
    • AVRDC (2007) Tomato trials for the APSA workshop. In: AVRDC report 2004. AVRDC-The World Vegetable Center, Shanhua, p 32.
  • 5
    • 0037304272 scopus 로고    scopus 로고
    • QTLs for tomato powdery mildew resistance (Oidium lycopersici) in Lycopersicon parviflorum G1.1601 co-localize with two qualitative powdery mildew resistance genes
    • Bai Y, Huang CC, van der Hulst R, Meijer-Dekens F, Bonnema G, Lindhout P (2003) QTLs for tomato powdery mildew resistance (Oidium lycopersici) in Lycopersicon parviflorum G1. 1601 co-localize with two qualitative powdery mildew resistance genes. Mol Plant Microbe Interact 16(2): 169-176.
    • (2003) Mol Plant Microbe Interact , vol.16 , Issue.2 , pp. 169-176
    • Bai, Y.1    Huang, C.C.2    van der Hulst, R.3    Meijer-Dekens, F.4    Bonnema, G.5    Lindhout, P.6
  • 6
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144.
    • (1994) Genomics , vol.19 , pp. 137-144
    • Bell, C.J.1    Ecker, J.R.2
  • 7
    • 0030813028 scopus 로고    scopus 로고
    • An interspecific backcross of Lycopersicon esculentum × L. hirsutum: Linkage analysis and a QTL study of sexual compatibility factors and floral traits
    • Bernacchi D, Tanksley SD (1997) An interspecific backcross of Lycopersicon esculentum × L. hirsutum: linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147: 861-877.
    • (1997) Genetics , vol.147 , pp. 861-877
    • Bernacchi, D.1    Tanksley, S.D.2
  • 8
    • 0031671801 scopus 로고    scopus 로고
    • The use of semiautomated fluorescent microsatellite analysis for tomato cultivar identification
    • Bredemeijer GMM, Arens P, Wouters D (1998) The use of semiautomated fluorescent microsatellite analysis for tomato cultivar identification. Theor Appl Genet 97: 584-590.
    • (1998) Theor Appl Genet , vol.97 , pp. 584-590
    • Bredemeijer, G.M.M.1    Arens, P.2    Wouters, D.3
  • 9
    • 33745200294 scopus 로고    scopus 로고
    • Identification of QTLs for Ralstonia solanacearum race 3-phylotype II resistance in tomato
    • Carmeille A, Caranta C, Dintinger J, Prior P, Luisetti J, Besse P (2006) Identification of QTLs for Ralstonia solanacearum race 3-phylotype II resistance in tomato. Theor Appl Genet 113: 110-121.
    • (2006) Theor Appl Genet , vol.113 , pp. 110-121
    • Carmeille, A.1    Caranta, C.2    Dintinger, J.3    Prior, P.4    Luisetti, J.5    Besse, P.6
  • 10
    • 0032897510 scopus 로고    scopus 로고
    • A molecular linkage map of tomato based on a cross between Lycopersicon esculentum and L. pimpinellifolium and its comparison with other molecular maps of tomato
    • Chen FQ, Foolad MR (1999) A molecular linkage map of tomato based on a cross between Lycopersicon esculentum and L. pimpinellifolium and its comparison with other molecular maps of tomato. Genome 42: 94-103.
    • (1999) Genome , vol.42 , pp. 94-103
    • Chen, F.Q.1    Foolad, M.R.2
  • 11
    • 73949155002 scopus 로고    scopus 로고
    • Molecular markers for use in plant molecular breeding and germplasm evaluation
    • E. P. Guimarães, J. Ruane, B. D. Scherf, A. Sonnino, and J. D. Dargie (Eds.), Rome: Food and Agriculture Organization of the United Nations
    • Edwards JD, McCouch SR (2007) Molecular markers for use in plant molecular breeding and germplasm evaluation. In: Guimarães EP, Ruane J, Scherf BD, Sonnino A, Dargie JD (eds) Marker-assisted selection. Current status and future perspectives in crops, livestock, forestry, and fish. Food and Agriculture Organization of the United Nations, Rome, pp 29-49.
    • (2007) Marker-Assisted Selection. Current Status and Future Perspectives in Crops, Livestock, Forestry, and Fish , pp. 29-49
    • Edwards, J.D.1    McCouch, S.R.2
  • 12
    • 34548595595 scopus 로고    scopus 로고
    • Foolad MR (2007) Genome mapping and molecular breeding of tomato. Int J Plant Genomics. doi: 10. 1155/2007/64358.
  • 13
    • 22844452344 scopus 로고    scopus 로고
    • Development of a set of PCR-based anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments
    • Frary A, Xu Y, Liu J, Mitchell S, Tedeschi E, Tanksley SD (2005) Development of a set of PCR-based anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments. Theor Appl Genet 111(2): 291-312.
    • (2005) Theor Appl Genet , vol.111 , Issue.2 , pp. 291-312
    • Frary, A.1    Xu, Y.2    Liu, J.3    Mitchell, S.4    Tedeschi, E.5    Tanksley, S.D.6
  • 14
    • 0030781468 scopus 로고    scopus 로고
    • Introgression and DNA marker analysis of Lycopersicon peruvianum, a wild relative of the cultivated tomato, L. esculentum, followed through three successive backcross generations
    • Fulton TM, Nelson JC, Tanksley SD (1997) Introgression and DNA marker analysis of Lycopersicon peruvianum, a wild relative of the cultivated tomato, L. esculentum, followed through three successive backcross generations. Theor Appl Genet 95: 895-902.
    • (1997) Theor Appl Genet , vol.95 , pp. 895-902
    • Fulton, T.M.1    Nelson, J.C.2    Tanksley, S.D.3
  • 15
    • 0035984048 scopus 로고    scopus 로고
    • Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants
    • Fulton TM, van der Hoeven R, Eannetta NT, Tanksley SD (2002) Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14: 1457-1467.
    • (2002) Plant Cell , vol.14 , pp. 1457-1467
    • Fulton, T.M.1    van der Hoeven, R.2    Eannetta, N.T.3    Tanksley, S.D.4
  • 16
    • 0029811748 scopus 로고    scopus 로고
    • Genetic analysis of RFLPs, GATA microsatelllites and RAPDs in a cross between L. esculentum and L. pimpinelliflium
    • Grandillo S, Tanksley SD (1996) Genetic analysis of RFLPs, GATA microsatelllites and RAPDs in a cross between L. esculentum and L. pimpinelliflium. Theor Appl Genet 92: 957-965.
    • (1996) Theor Appl Genet , vol.92 , pp. 957-965
    • Grandillo, S.1    Tanksley, S.D.2
  • 17
    • 0034066228 scopus 로고    scopus 로고
    • Mapping a wild tomato introgression associated with tomato yellow leaf curl virus resistance in a cultivated tomato line
    • Hanson PM, Bernacchi D, Green S (2000) Mapping a wild tomato introgression associated with tomato yellow leaf curl virus resistance in a cultivated tomato line. J Am Soc Hortic Sci 125(1): 15-20.
    • (2000) J Am Soc Hortic Sci , vol.125 , Issue.1 , pp. 15-20
    • Hanson, P.M.1    Bernacchi, D.2    Green, S.3
  • 18
    • 0036195975 scopus 로고    scopus 로고
    • Gene action and heritability of high temperature fruit set in tomato line CL5915
    • Hanson PM, Chen J, Kuo G (2002) Gene action and heritability of high temperature fruit set in tomato line CL5915. HortScience 37(1): 172-175.
    • (2002) HortScience , vol.37 , Issue.1 , pp. 172-175
    • Hanson, P.M.1    Chen, J.2    Kuo, G.3
  • 19
    • 0037265425 scopus 로고    scopus 로고
    • Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars
    • He C, Poysa V, Yu K (2003) Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars. Theor Appl Genet 106: 363-373.
    • (2003) Theor Appl Genet , vol.106 , pp. 363-373
    • He, C.1    Poysa, V.2    Yu, K.3
  • 20
    • 0000391368 scopus 로고
    • Two complex resistance loci revealed in tomato by classical and RFLP mapping of Cf-2, Cf-4, Cf-5, and Cf-9 genes for resistance to Cladosporium fulvum
    • Jones DA, Dickinson MJ, Balint-Kurti PJ, Dixon MS, Jones JDG (1993) Two complex resistance loci revealed in tomato by classical and RFLP mapping of Cf-2, Cf-4, Cf-5, and Cf-9 genes for resistance to Cladosporium fulvum. Mol Plant Microbe Interact 6: 348-357.
    • (1993) Mol Plant Microbe Interact , vol.6 , pp. 348-357
    • Jones, D.A.1    Dickinson, M.J.2    Balint-Kurti, P.J.3    Dixon, M.S.4    Jones, J.D.G.5
  • 21
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi D (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
    • (1944) Ann Eugen , vol.12 , pp. 172-175
    • Kosambi, D.1
  • 22
    • 33645754932 scopus 로고    scopus 로고
    • Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
    • Kumpatla SP, Mukhopadhyay S (2005) Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species. Genome 48: 985-998.
    • (2005) Genome , vol.48 , pp. 985-998
    • Kumpatla, S.P.1    Mukhopadhyay, S.2
  • 23
    • 0023426747 scopus 로고
    • MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural population
    • Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural population. Genomics 1: 174-181.
    • (1987) Genomics , vol.1 , pp. 174-181
    • Lander, E.S.1    Green, P.2    Abrahamson, J.3    Barlow, A.4    Daly, M.J.5    Lincoln, S.E.6    Newburg, L.7
  • 26
    • 0031977934 scopus 로고    scopus 로고
    • Genetic Mapping of Ph-2, a single locus controlling partial resistance to Phytophthora infestans in tomato
    • Moreau P, Thoquet P, Olivier J, Laterrot H, Grimsley N (1998) Genetic Mapping of Ph-2, a single locus controlling partial resistance to Phytophthora infestans in tomato. Mol Plant Microbe Interact 11(4): 259-269.
    • (1998) Mol Plant Microbe Interact , vol.11 , Issue.4 , pp. 259-269
    • Moreau, P.1    Thoquet, P.2    Olivier, J.3    Laterrot, H.4    Grimsley, N.5
  • 27
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3: 175-182.
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 28
    • 71049115687 scopus 로고    scopus 로고
    • A snapshot of the emerging tomato genome sequence
    • doi:10.3835/plantgenome2008.08.0005
    • Mueller LA, Lankhorst RK, Tanksley SD, Giovannoni JJ et al (2009) A snapshot of the emerging tomato genome sequence. Plant Genome 2: 78-92. doi: 10. 3835/plantgenome2008. 08. 0005.
    • (2009) Plant Genome , vol.2 , pp. 78-92
    • Mueller, L.A.1    Lankhorst, R.K.2    Tanksley, S.D.3    Giovannoni, J.J.4
  • 29
    • 77953323691 scopus 로고    scopus 로고
    • Nagy I, Polley A, Ganal M (1998) Development and characterization of microsatellite markers in pepper. In: Xth EUCARPIA meeting on genetics and breeding on Capsicum & Eggplant, Avignon, France.
  • 30
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
    • (1973) Proc Natl Acad Sci USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 31
    • 63949085186 scopus 로고    scopus 로고
    • Characterization of tomato SSR markers developed using BAC-end and cDNA sequences from genome database
    • Ohyama A, Asamizu E, Negoro S, Miyatake K, Yamaguchi H, Tabata S, Fukuoka H (2009) Characterization of tomato SSR markers developed using BAC-end and cDNA sequences from genome database. Mol Breed 23: 685-691.
    • (2009) Mol Breed , vol.23 , pp. 685-691
    • Ohyama, A.1    Asamizu, E.2    Negoro, S.3    Miyatake, K.4    Yamaguchi, H.5    Tabata, S.6    Fukuoka, H.7
  • 32
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computer
    • Page RDM (1996) TreeView: an application to display phylogenetic trees on personal computer. Bioinformatics 12: 357-358.
    • (1996) Bioinformatics , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 33
    • 0029152492 scopus 로고
    • Recombinant inbred lines for genetic mapping in tomato
    • Paran I, Goldman I, Tanksley S, Zamir D (1995) Recombinant inbred lines for genetic mapping in tomato. Theor Appl Genet 90: 542-548.
    • (1995) Theor Appl Genet , vol.90 , pp. 542-548
    • Paran, I.1    Goldman, I.2    Tanksley, S.3    Zamir, D.4
  • 34
    • 33846214790 scopus 로고    scopus 로고
    • The design of Capsicum spp. SSR assays via analysis of in silico DNA sequence, and their potential utility for genetic mapping
    • Portis E, Nagy I, Sasvari Z, Stagel A, Barchi L, Lanteri S (2007) The design of Capsicum spp. SSR assays via analysis of in silico DNA sequence, and their potential utility for genetic mapping. Plant Sci 172: 640-648.
    • (2007) Plant Sci , vol.172 , pp. 640-648
    • Portis, E.1    Nagy, I.2    Sasvari, Z.3    Stagel, A.4    Barchi, L.5    Lanteri, S.6
  • 37
    • 62249088653 scopus 로고    scopus 로고
    • Sharma A, Zhang L, Nino-Liu D, Ashrafi H, Foolad MR (2008) A Solanum lycopersicum × Solanum pimpinellifolium linkage map of tomato displaying genomic locations of R-Genes, RGAs, and candidate resistance/defense-response ESTs. Int J Plant Genomics. doi: 10. 1155/2008/926090.
  • 38
    • 0031048901 scopus 로고    scopus 로고
    • Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species
    • Smulders MJ, Bredemeijer G, Rus-Kortekaas W, Arens P, Vosman B (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97: 264-272.
    • (1997) Theor Appl Genet , vol.97 , pp. 264-272
    • Smulders, M.J.1    Bredemeijer, G.2    Rus-Kortekaas, W.3    Arens, P.4    Vosman, B.5
  • 43
    • 0033961472 scopus 로고    scopus 로고
    • Resistance of tomato line Hawaii7996 to Ralstonia solanacearum Pss4 in Taiwan is controlled mainly by a major strain-specific locus
    • Wang JF, Olivier J, Thoquet P, Mangin B, Sauviac L, Grimsley NH (2000) Resistance of tomato line Hawaii7996 to Ralstonia solanacearum Pss4 in Taiwan is controlled mainly by a major strain-specific locus. Mol Plant Microbe Interact 13: 6-13.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 6-13
    • Wang, J.F.1    Olivier, J.2    Thoquet, P.3    Mangin, B.4    Sauviac, L.5    Grimsley, N.H.6
  • 44
    • 0007367001 scopus 로고    scopus 로고
    • Department of Statistics, North Carolina State University, Raleigh, NC
    • Wang S, Basten CJ, Zeng ZB (2007) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen. ncsu. edu/qtlcart/WQTLCart. htm.
    • (2007) Windows QTL Cartographer 2.5
    • Wang, S.1    Basten, C.J.2    Zeng, Z.B.3
  • 45
    • 0030774370 scopus 로고    scopus 로고
    • Tomato germplasm lines T4065, T4099, T5019, and T5020 with unique genotypes that enhance fruit quality
    • Wann EV (1997) Tomato germplasm lines T4065, T4099, T5019, and T5020 with unique genotypes that enhance fruit quality. HortScience 32(4): 747-748.
    • (1997) HortScience , vol.32 , Issue.4 , pp. 747-748
    • Wann, E.V.1
  • 46
    • 0025157834 scopus 로고
    • Informativeness of human (dC-dA)n, (dG-dT)n polymorphisms
    • Weber JL (1990) Informativeness of human (dC-dA)n, (dG-dT)n polymorphisms. Genomics 7: 524-530.
    • (1990) Genomics , vol.7 , pp. 524-530
    • Weber, J.L.1
  • 47
    • 0034493134 scopus 로고    scopus 로고
    • Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.)
    • Yu K, Park SJ, Poysa V, Gebts P (2000) Integration of simple sequence repeat (SSR) markers into a molecular linkage map of common bean (Phaseolus vulgaris L.). J Hered 91(6): 429-434.
    • (2000) J Hered , vol.91 , Issue.6 , pp. 429-434
    • Yu, K.1    Park, S.J.2    Poysa, V.3    Gebts, P.4
  • 48
    • 0028021129 scopus 로고
    • Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1
    • Zamir D, Ekstein-Michelson I, Zakay Y (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, Ty-1. Theor Appl Genet 88(2): 141-146.
    • (1994) Theor Appl Genet , vol.88 , Issue.2 , pp. 141-146
    • Zamir, D.1    Ekstein-Michelson, I.2    Zakay, Y.3
  • 49
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11: 1-16.
    • (2002) Mol Ecol , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 50
    • 0036008831 scopus 로고    scopus 로고
    • A molecular linkage map of tomato displaying chromosomal locations of resistance gene analogs based on a Lycopersicon esculentum × Lycopersicon hirsutum cross
    • Zhang LP, Khan A, Niño-Liu D, Foolad MR (2002) A molecular linkage map of tomato displaying chromosomal locations of resistance gene analogs based on a Lycopersicon esculentum × Lycopersicon hirsutum cross. Genome 45(1): 133-146.
    • (2002) Genome , vol.45 , Issue.1 , pp. 133-146
    • Zhang, L.P.1    Khan, A.2    Niño-Liu, D.3    Foolad, M.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.