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Volumn 8, Issue 3, 2013, Pages

An Algorithm to Automate Yeast Segmentation and Tracking

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; CELL BUDDING; CELL GROWTH; CELL MATURATION; CELL STRUCTURE; CELL TRACKING; FUNGAL COLONIZATION; IMAGE ANALYSIS; INFORMATION PROCESSING; MOLECULAR IMAGING; NONHUMAN; SACCHAROMYCES CEREVISIAE; STRUCTURE ANALYSIS; YEAST; YEAST CELL;

EID: 84874782851     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0057970     Document Type: Article
Times cited : (53)

References (33)
  • 1
    • 80051720034 scopus 로고    scopus 로고
    • Distinct interactions select and maintain a specific cell fate
    • Doncic A, Falleur-Fettig M, Skotheim JM, (2011) Distinct interactions select and maintain a specific cell fate. Mol Cell 43: 528-539.
    • (2011) Mol Cell , vol.43 , pp. 528-539
    • Doncic, A.1    Falleur-Fettig, M.2    Skotheim, J.M.3
  • 2
    • 66249136447 scopus 로고    scopus 로고
    • Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis
    • Spencer SL, Gaudet S, Albeck JG, Burke JM, Sorger PK, (2009) Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature 459: 428-432.
    • (2009) Nature , vol.459 , pp. 428-432
    • Spencer, S.L.1    Gaudet, S.2    Albeck, J.G.3    Burke, J.M.4    Sorger, P.K.5
  • 3
    • 0001389945 scopus 로고
    • Enzyme Induction as an All-or-None Phenomenon
    • Novick A, Weiner M, (1957) Enzyme Induction as an All-or-None Phenomenon. Proc Natl Acad Sci U S A 43: 553-566.
    • (1957) Proc Natl Acad Sci U S A , vol.43 , pp. 553-566
    • Novick, A.1    Weiner, M.2
  • 4
    • 52949098296 scopus 로고    scopus 로고
    • Frequency-modulated nuclear localization bursts coordinate gene regulation
    • Cai L, Dalal CK, Elowitz MB, (2008) Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 455: 485-490.
    • (2008) Nature , vol.455 , pp. 485-490
    • Cai, L.1    Dalal, C.K.2    Elowitz, M.B.3
  • 5
    • 34548168571 scopus 로고    scopus 로고
    • The effects of molecular noise and size control on variability in the budding yeast cell cycle
    • Di Talia S, Skotheim JM, Bean JM, Siggia ED, Cross FR, (2007) The effects of molecular noise and size control on variability in the budding yeast cell cycle. Nature 448: 947-951.
    • (2007) Nature , vol.448 , pp. 947-951
    • Di Talia, S.1    Skotheim, J.M.2    Bean, J.M.3    Siggia, E.D.4    Cross, F.R.5
  • 6
    • 47549106474 scopus 로고    scopus 로고
    • Positive feedback of G1 cyclins ensures coherent cell cycle entry
    • Skotheim JM, Di Talia S, Siggia ED, Cross FR, (2008) Positive feedback of G1 cyclins ensures coherent cell cycle entry. Nature 454: 291-296.
    • (2008) Nature , vol.454 , pp. 291-296
    • Skotheim, J.M.1    Di Talia, S.2    Siggia, E.D.3    Cross, F.R.4
  • 7
    • 79955950854 scopus 로고    scopus 로고
    • Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
    • Bai L, Ondracka A, Cross FR, (2011) Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol Cell 42: 465-476.
    • (2011) Mol Cell , vol.42 , pp. 465-476
    • Bai, L.1    Ondracka, A.2    Cross, F.R.3
  • 8
    • 79952638264 scopus 로고    scopus 로고
    • Cellular decision making and biological noise: from microbes to mammals
    • Balazsi G, van Oudenaarden A, Collins JJ, (2011) Cellular decision making and biological noise: from microbes to mammals. Cell 144: 910-925.
    • (2011) Cell , vol.144 , pp. 910-925
    • Balazsi, G.1    van Oudenaarden, A.2    Collins, J.J.3
  • 12
    • 71049155903 scopus 로고    scopus 로고
    • Efficient Framework for Automated Classification of Subcellular Patterns in Budding Yeast
    • Huh S, Lee D, Murphy RF, (2009) Efficient Framework for Automated Classification of Subcellular Patterns in Budding Yeast. Cytometry Part A 75A: 934-940.
    • (2009) Cytometry Part A , vol.75 A , pp. 934-940
    • Huh, S.1    Lee, D.2    Murphy, R.F.3
  • 13
    • 0041724129 scopus 로고    scopus 로고
    • Identification of partly destroyed objects using deformable templates
    • Rue H, Husby OK, (1998) Identification of partly destroyed objects using deformable templates. Statistics and Computing 8: 221-228.
    • (1998) Statistics and Computing , vol.8 , pp. 221-228
    • Rue, H.1    Husby, O.K.2
  • 14
    • 50049097189 scopus 로고    scopus 로고
    • Image analysis algorithms for cell contour recognition in budding yeast
    • Kvarnstrom M, Logg K, Diez A, Bodvard K, Kall M, (2008) Image analysis algorithms for cell contour recognition in budding yeast. Opt Express 16: 12943-12957.
    • (2008) Opt Express , vol.16 , pp. 12943-12957
    • Kvarnstrom, M.1    Logg, K.2    Diez, A.3    Bodvard, K.4    Kall, M.5
  • 15
    • 0031742689 scopus 로고    scopus 로고
    • Morphological characterisation of yeast colony growth on solid media using image processing
    • Robinson A, Sadr-kazemi N, Dickason G, Harrison STL, (1998) Morphological characterisation of yeast colony growth on solid media using image processing. Biotechnology Techniques 12: 763-767.
    • (1998) Biotechnology Techniques , vol.12 , pp. 763-767
    • Robinson, A.1    Sadr-kazemi, N.2    Dickason, G.3    Harrison, S.T.L.4
  • 16
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, et al. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441: 840-846.
    • (2006) Nature , vol.441 , pp. 840-846
    • Newman, J.R.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5
  • 17
    • 0017660982 scopus 로고
    • Unequal division in Saccharomyces cerevisiae and its implications for the control of cell division
    • Hartwell LH, Unger MW, (1977) Unequal division in Saccharomyces cerevisiae and its implications for the control of cell division. J Cell Biol 75: 422-435.
    • (1977) J Cell Biol , vol.75 , pp. 422-435
    • Hartwell, L.H.1    Unger, M.W.2
  • 18
    • 81255197643 scopus 로고    scopus 로고
    • Yeast: an experimental organism for 21st Century biology
    • Botstein D, Fink GR, (2011) Yeast: an experimental organism for 21st Century biology. Genetics 189: 695-704.
    • (2011) Genetics , vol.189 , pp. 695-704
    • Botstein, D.1    Fink, G.R.2
  • 20
    • 50049097189 scopus 로고    scopus 로고
    • Image analysis algorithms for cell contour recognition in budding yeast
    • Kvarnstrom M, Logg K, Diez A, Bodvard K, Kall M, (2008) Image analysis algorithms for cell contour recognition in budding yeast. Optics Express 16: 12943-12957.
    • (2008) Optics Express , vol.16 , pp. 12943-12957
    • Kvarnstrom, M.1    Logg, K.2    Diez, A.3    Bodvard, K.4    Kall, M.5
  • 23
    • 84874435293 scopus 로고    scopus 로고
    • An integrated image analysis platform to quantify signal transduction in single cells
    • Pelet S, Dechant R, Lee SS, van Drogen F, Peter M, (2012) An integrated image analysis platform to quantify signal transduction in single cells. Integr Biol (Camb) 4: 1274-1282.
    • (2012) Integr Biol (Camb) , vol.4 , pp. 1274-1282
    • Pelet, S.1    Dechant, R.2    Lee, S.S.3    van Drogen, F.4    Peter, M.5
  • 25
    • 60549104030 scopus 로고    scopus 로고
    • Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
    • Jones TR, Carpenter AE, Lamprecht MR, Moffat J, Silver SJ, et al. (2009) Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning. Proc Natl Acad Sci U S A 106: 1826-1831.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 1826-1831
    • Jones, T.R.1    Carpenter, A.E.2    Lamprecht, M.R.3    Moffat, J.4    Silver, S.J.5
  • 26
    • 34547830883 scopus 로고    scopus 로고
    • Automated image analysis of protein localization in budding yeast
    • Chen SC, Zhao T, Gordon GJ, Murphy RF, (2007) Automated image analysis of protein localization in budding yeast. Bioinformatics 23: I66-I71.
    • (2007) Bioinformatics , vol.23
    • Chen, S.C.1    Zhao, T.2    Gordon, G.J.3    Murphy, R.F.4
  • 27
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • Breiman L, (1996) Bagging predictors. Machine Learning 24: 123-140.
    • (1996) Machine Learning , vol.24 , pp. 123-140
    • Breiman, L.1
  • 28
    • 39149084079 scopus 로고    scopus 로고
    • A microfluidic system for dynamic yeast cell imaging
    • Lee PJ, Helman NC, Lim WA, Hung PJ, (2008) A microfluidic system for dynamic yeast cell imaging. Biotechniques 44: 91-95.
    • (2008) Biotechniques , vol.44 , pp. 91-95
    • Lee, P.J.1    Helman, N.C.2    Lim, W.A.3    Hung, P.J.4
  • 29
    • 34547216984 scopus 로고    scopus 로고
    • Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae
    • Chen RE, Thorner J, (2007) Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae. Biochim Biophys Acta 1773: 1311-1340.
    • (2007) Biochim Biophys Acta , vol.1773 , pp. 1311-1340
    • Chen, R.E.1    Thorner, J.2
  • 30
    • 2942755857 scopus 로고    scopus 로고
    • Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5
    • de Bruin RA, McDonald WH, Kalashnikova TI, Yates J 3rd, Wittenberg C, (2004) Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5. Cell 117: 887-898.
    • (2004) Cell , vol.117 , pp. 887-898
    • de Bruin, R.A.1    McDonald, W.H.2    Kalashnikova, T.I.3    Yates 3rd, J.4    Wittenberg, C.5
  • 31
    • 2942739030 scopus 로고    scopus 로고
    • CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast
    • Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, et al. (2004) CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast. Cell 117: 899-913.
    • (2004) Cell , vol.117 , pp. 899-913
    • Costanzo, M.1    Nishikawa, J.L.2    Tang, X.3    Millman, J.S.4    Schub, O.5
  • 32
    • 80051716158 scopus 로고    scopus 로고
    • Commitment to a cellular transition precedes genome-wide transcriptional change
    • Eser U, Falleur-Fettig M, Johnson A, Skotheim JM, (2011) Commitment to a cellular transition precedes genome-wide transcriptional change. Mol Cell 43: 515-527.
    • (2011) Mol Cell , vol.43 , pp. 515-527
    • Eser, U.1    Falleur-Fettig, M.2    Johnson, A.3    Skotheim, J.M.4
  • 33
    • 0028464661 scopus 로고
    • Topographic Distance and Watershed Lines
    • Meyer F, (1994) Topographic Distance and Watershed Lines. Signal Processing 38: 113-125.
    • (1994) Signal Processing , vol.38 , pp. 113-125
    • Meyer, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.