메뉴 건너뛰기




Volumn 109, Issue , 2013, Pages 51-61

Metaproteomic characterization of high molecular weight dissolved organic matter in surface seawaters in the South China Sea

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CARBON CYCLE; DISSOLVED ORGANIC MATTER; MOLECULAR ANALYSIS; NITROGEN; PHOSPHORUS; PROTEIN; PROTEOMICS; SEAWATER;

EID: 84874774042     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2013.01.041     Document Type: Article
Times cited : (14)

References (45)
  • 1
    • 0030617784 scopus 로고    scopus 로고
    • A major biopolymeric component to dissolved organic carbon in surface seawater
    • Aluwihare L.I., Repata D.J., Chen R.C. A major biopolymeric component to dissolved organic carbon in surface seawater. Nature 1997, 387:166-169.
    • (1997) Nature , vol.387 , pp. 166-169
    • Aluwihare, L.I.1    Repata, D.J.2    Chen, R.C.3
  • 2
    • 34548718221 scopus 로고    scopus 로고
    • Microbial structuring of marine ecosystems
    • Azam F., Malfatti F. Microbial structuring of marine ecosystems. Nat. Rev. Microbiol. 2007, 5:782-791.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 782-791
    • Azam, F.1    Malfatti, F.2
  • 3
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: evidence for a new type of phototrophy in the sea
    • Beja O., Aravind L., Koonin E.V., Suzuki M.T., Hadd A., Nguyen L.P., et al. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 2000, 289:1902-1906.
    • (2000) Science , vol.289 , pp. 1902-1906
    • Beja, O.1    Aravind, L.2    Koonin, E.V.3    Suzuki, M.T.4    Hadd, A.5    Nguyen, L.P.6
  • 4
    • 0037252823 scopus 로고    scopus 로고
    • Abundance of amino sugars and peptidoglycan in marine particles and dissolved organic matter
    • Benner R., Kaiser K. Abundance of amino sugars and peptidoglycan in marine particles and dissolved organic matter. Limnol. Oceanogr. 2003, 48:118-128.
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 118-128
    • Benner, R.1    Kaiser, K.2
  • 5
    • 0038219647 scopus 로고    scopus 로고
    • Ferritins, iron uptake and storage from the bacterioferritin viewpoint
    • Carrondo M.A. Ferritins, iron uptake and storage from the bacterioferritin viewpoint. EMBO J. 2003, 22:1959-1968.
    • (2003) EMBO J. , vol.22 , pp. 1959-1968
    • Carrondo, M.A.1
  • 6
    • 15944382005 scopus 로고    scopus 로고
    • Spatial and seasonal variations of nitrate-based new production and primary production in the South China Sea
    • Chen Y.L. Spatial and seasonal variations of nitrate-based new production and primary production in the South China Sea. Deep-Sea Res. I 2005, 52:319-340.
    • (2005) Deep-Sea Res. I , vol.52 , pp. 319-340
    • Chen, Y.L.1
  • 7
    • 84856759434 scopus 로고    scopus 로고
    • Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria
    • Christie-Oleza J.A., Pina-Villalonga J.M., Bosch R., Nogales B., Armengaud J. Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria. Mol. Cell. Proteomics 2012, 10.1074/mcp.M111.013110.
    • (2012) Mol. Cell. Proteomics
    • Christie-Oleza, J.A.1    Pina-Villalonga, J.M.2    Bosch, R.3    Nogales, B.4    Armengaud, J.5
  • 8
    • 77955617652 scopus 로고    scopus 로고
    • Characterization of particulate organic matter in the water column of the South China Sea using shotgun proteomic approach
    • Dong H.P., Wang D.Z., Dai M.H., Hong H.S. Characterization of particulate organic matter in the water column of the South China Sea using shotgun proteomic approach. Limnol. Oceanogr. 2010, 55:1565-1578.
    • (2010) Limnol. Oceanogr. , vol.55 , pp. 1565-1578
    • Dong, H.P.1    Wang, D.Z.2    Dai, M.H.3    Hong, H.S.4
  • 11
    • 0029189546 scopus 로고
    • Dynamics of dissolved organic carbon (DOC) in oceanic environments
    • Guo L.D., Santschi P.H., Warnken K. Dynamics of dissolved organic carbon (DOC) in oceanic environments. Limnol. Oceanogr. 1995, 40:1392-1403.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 1392-1403
    • Guo, L.D.1    Santschi, P.H.2    Warnken, K.3
  • 12
    • 0030976360 scopus 로고    scopus 로고
    • Composition and cycling of colloids in marine environments
    • Guo L.D., Santschi P.H. Composition and cycling of colloids in marine environments. Rev. Geophys. 1997, 35:17-40.
    • (1997) Rev. Geophys. , vol.35 , pp. 17-40
    • Guo, L.D.1    Santschi, P.H.2
  • 13
    • 84872359619 scopus 로고    scopus 로고
    • Recalcitrant dissolved organic carbon fractions
    • Hansell D.A. Recalcitrant dissolved organic carbon fractions. Annu. Rev. Mar. Sci. 2012, 10.1146/annurev-marine-120710-100757.
    • (2012) Annu. Rev. Mar. Sci.
    • Hansell, D.A.1
  • 16
    • 4944236083 scopus 로고    scopus 로고
    • Ecological studies on Prochlorococcus in China Seas
    • Jiao N.Z., Yang Y. Ecological studies on Prochlorococcus in China Seas. Chin. Sci. Bull. 2002, 47:1243-1250.
    • (2002) Chin. Sci. Bull. , vol.47 , pp. 1243-1250
    • Jiao, N.Z.1    Yang, Y.2
  • 18
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner M.B., DeLong E.F., Karl D.M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 2001, 409:507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 19
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller A., Nesvizhskii A.I., Kolker E., Aebersold R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74:5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 20
    • 34047265993 scopus 로고    scopus 로고
    • Pelagic nitrogen dynamics in the Vietnamese upwelling area according to stable nitrogen and carbon isotope data
    • Loick N., Dippner J., Nhu-Doan H., Liskow I., Voss M. Pelagic nitrogen dynamics in the Vietnamese upwelling area according to stable nitrogen and carbon isotope data. Deep-Sea Res. I 2007, 54:596-607.
    • (2007) Deep-Sea Res. I , vol.54 , pp. 596-607
    • Loick, N.1    Dippner, J.2    Nhu-Doan, H.3    Liskow, I.4    Voss, M.5
  • 21
    • 0002886141 scopus 로고
    • The biochemistry and genetics of nitrogen fixation by photosynthetic bacteria
    • Kluwer Academic Publishing Inc., Dordrecht, R.E. Blankenship, M.T. Madigan, C.E. Bauer (Eds.)
    • Ludden P.W., Roberts G.P. The biochemistry and genetics of nitrogen fixation by photosynthetic bacteria. Anoxygenic Photosynthetic Bacteria 1995, 929-947. Kluwer Academic Publishing Inc., Dordrecht. R.E. Blankenship, M.T. Madigan, C.E. Bauer (Eds.).
    • (1995) Anoxygenic Photosynthetic Bacteria , pp. 929-947
    • Ludden, P.W.1    Roberts, G.P.2
  • 22
    • 0030662463 scopus 로고    scopus 로고
    • Chemical composition of dissolved organic nitrogen in the ocean
    • McCarthy M.D., Pratum T., Hedges J.I., Benner R. Chemical composition of dissolved organic nitrogen in the ocean. Nature 1997, 390:150-154.
    • (1997) Nature , vol.390 , pp. 150-154
    • McCarthy, M.D.1    Pratum, T.2    Hedges, J.I.3    Benner, R.4
  • 23
    • 77951497989 scopus 로고    scopus 로고
    • Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
    • Morris R.M., Nunn B.L., Frazar C., Goodlett D.R., Ting Y.S., Rocap G. Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. The ISME J. 2010, 4:673-685.
    • (2010) The ISME J. , vol.4 , pp. 673-685
    • Morris, R.M.1    Nunn, B.L.2    Frazar, C.3    Goodlett, D.R.4    Ting, Y.S.5    Rocap, G.6
  • 25
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii A.I., Keller A., Kolker E., Aebersold R. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75:4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 26
  • 27
    • 0038003208 scopus 로고    scopus 로고
    • Dissolved organic matter in oceanic waters
    • Ogawa H., Tanoue E. Dissolved organic matter in oceanic waters. J. Oceanogr. 2003, 59:129-147.
    • (2003) J. Oceanogr. , vol.59 , pp. 129-147
    • Ogawa, H.1    Tanoue, E.2
  • 28
    • 19144363277 scopus 로고    scopus 로고
    • Marine proteomics: generation of sequence tags for dissolved proteins in seawater using tandem mass spectrometry
    • Powell M.J., Sutton J.N., Del Castillo C.E., Timperman A.I. Marine proteomics: generation of sequence tags for dissolved proteins in seawater using tandem mass spectrometry. Mar. Chem. 2005, 95:183-198.
    • (2005) Mar. Chem. , vol.95 , pp. 183-198
    • Powell, M.J.1    Sutton, J.N.2    Del Castillo, C.E.3    Timperman, A.I.4
  • 29
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
    • doi10.1371/journal/pbio.0050077
    • Rusch D.B., Halpern A.L., Sutton G., Heidelberg K.B., Williamson S., Yooseph S., et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 2007, 5:e77. doi10.1371/journal/pbio.0050077.
    • (2007) PLoS Biol. , vol.5
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5    Yooseph, S.6
  • 30
    • 49749115277 scopus 로고    scopus 로고
    • Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method
    • Ryu S., Gallis B., Goo Y.A., Shaffer S.A., Radulovic D., Goodlett D.R. Comparison of a label-free quantitative proteomic method based on peptide ion current area to the isotope coded affinity tag method. Cancer Inform. 2008, 6:243-255.
    • (2008) Cancer Inform. , vol.6 , pp. 243-255
    • Ryu, S.1    Gallis, B.2    Goo, Y.A.3    Shaffer, S.A.4    Radulovic, D.5    Goodlett, D.R.6
  • 32
    • 58049112263 scopus 로고    scopus 로고
    • Transport functions dominate the SAR11 metaproteome at low nutrient extremes in the Sargasso Sea
    • Sowell S.M., Wilhelm L.J., Norbeck A.D., Lipton M.S., Nicora C.D., Barofsky D., et al. Transport functions dominate the SAR11 metaproteome at low nutrient extremes in the Sargasso Sea. The ISME J. 2008, 3:93-105.
    • (2008) The ISME J. , vol.3 , pp. 93-105
    • Sowell, S.M.1    Wilhelm, L.J.2    Norbeck, A.D.3    Lipton, M.S.4    Nicora, C.D.5    Barofsky, D.6
  • 33
    • 0041375471 scopus 로고    scopus 로고
    • Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
    • Sullivan M.B., Waterbury J.B., Chisholm S.W. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature 2003, 424:1047-1051.
    • (2003) Nature , vol.424 , pp. 1047-1051
    • Sullivan, M.B.1    Waterbury, J.B.2    Chisholm, S.W.3
  • 34
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle C.A. Viruses in the sea. Nature 2005, 437:356-361.
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 35
    • 0028995576 scopus 로고
    • Detection of dissolved protein molecules in oceanic waters
    • Tanoue E. Detection of dissolved protein molecules in oceanic waters. Mar. Chem. 1995, 51:239-252.
    • (1995) Mar. Chem. , vol.51 , pp. 239-252
    • Tanoue, E.1
  • 37
    • 79960967038 scopus 로고    scopus 로고
    • Metaproteomic characterization of dissolved organic matter in the water column of the South China Sea
    • Wang D.Z., Dong H.P., Xie Z.X., Dai M.H., Hong H.S. Metaproteomic characterization of dissolved organic matter in the water column of the South China Sea. Limnol. Oceanogr. 2011, 56:1641-1652.
    • (2011) Limnol. Oceanogr. , vol.56 , pp. 1641-1652
    • Wang, D.Z.1    Dong, H.P.2    Xie, Z.X.3    Dai, M.H.4    Hong, H.S.5
  • 39
    • 0030026070 scopus 로고    scopus 로고
    • Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry
    • Wilm M., Shevchenko A., Houthaeve T., Breit S., Schweigerer L., Fotsis T., Mann M. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 1996, 379:466-469.
    • (1996) Nature , vol.379 , pp. 466-469
    • Wilm, M.1    Shevchenko, A.2    Houthaeve, T.3    Breit, S.4    Schweigerer, L.5    Fotsis, T.6    Mann, M.7
  • 40
    • 0038191146 scopus 로고    scopus 로고
    • Detection and partial characterization of dissolved glycoproteins in oceanic waters
    • Yamada N., Tanoue E. Detection and partial characterization of dissolved glycoproteins in oceanic waters. Limnol. Oceanogr. 2003, 48:1037-1048.
    • (2003) Limnol. Oceanogr. , vol.48 , pp. 1037-1048
    • Yamada, N.1    Tanoue, E.2
  • 41
    • 33646523618 scopus 로고    scopus 로고
    • The inventory and chemical characterization of dissolved proteins in oceanic waters
    • Yamada N., Tanoue E. The inventory and chemical characterization of dissolved proteins in oceanic waters. Prog. Oceanogr. 2006, 69:1-18.
    • (2006) Prog. Oceanogr. , vol.69 , pp. 1-18
    • Yamada, N.1    Tanoue, E.2
  • 42
    • 62549151341 scopus 로고    scopus 로고
    • Similarity of electrophoretic dissolved protein spectra from coastal to pelagic seawaters
    • Yamada N., Tanoue E. Similarity of electrophoretic dissolved protein spectra from coastal to pelagic seawaters. J. Oceanogr. 2009, 65:223-233.
    • (2009) J. Oceanogr. , vol.65 , pp. 223-233
    • Yamada, N.1    Tanoue, E.2
  • 44
    • 79952898573 scopus 로고    scopus 로고
    • Phylogenetic diversity of bacterial communities in South China Sea mesoscale cyclonic eddy perturbations
    • Zhang Y., Jiao N., Sun Z., Hu A., Zheng Q. Phylogenetic diversity of bacterial communities in South China Sea mesoscale cyclonic eddy perturbations. Res. Microbiol. 2011, 162:320-329.
    • (2011) Res. Microbiol. , vol.162 , pp. 320-329
    • Zhang, Y.1    Jiao, N.2    Sun, Z.3    Hu, A.4    Zheng, Q.5
  • 45
    • 0742319978 scopus 로고    scopus 로고
    • Bacterial roles in the formation of high-molecular weight dissolved organic matter in estuarine and coastal waters: evidence from lipids and the compound-specific isotopic ratios
    • Zou L., Wang X.C., Callahan J., Culp R.A., Chen R.F., Altabet M.A., Sun M.Y. Bacterial roles in the formation of high-molecular weight dissolved organic matter in estuarine and coastal waters: evidence from lipids and the compound-specific isotopic ratios. Limnol. Oceanogr. 2004, 49:297-302.
    • (2004) Limnol. Oceanogr. , vol.49 , pp. 297-302
    • Zou, L.1    Wang, X.C.2    Callahan, J.3    Culp, R.A.4    Chen, R.F.5    Altabet, M.A.6    Sun, M.Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.