메뉴 건너뛰기




Volumn 9, Issue 2, 2013, Pages

Genome-Wide Diversity in the Levant Reveals Recent Structuring by Culture

(14)  Haber, Marc a,b   Gauguier, Dominique c,d   Youhanna, Sonia b   Patterson, Nick e   Moorjani, Priya f   Botigué, Laura R a   Platt, Daniel E g   Matisoo Smith, Elizabeth h   Soria Hernanz, David F i   Wells, R Spencer i   Bertranpetit, Jaume a   Tyler Smith, Chris j   Comas, David a   Zalloua, Pierre A b,k  


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CULTURAL ANTHROPOLOGY; GENE ISOLATION; GENETIC ASSOCIATION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; GLACIAL PERIOD; HUMAN; MIDDLE EAST; POPULATION GENETIC STRUCTURE; SINGLE NUCLEOTIDE POLYMORPHISM; STRATIFICATION;

EID: 84874762618     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1003316     Document Type: Article
Times cited : (69)

References (33)
  • 1
    • 70350561788 scopus 로고    scopus 로고
    • Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast
    • El-Sibai M, Platt DE, Haber M, Xue Y, Youhanna SC, et al. (2009) Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast. Ann Hum Genet 73: 568-581.
    • (2009) Ann Hum Genet , vol.73 , pp. 568-581
    • El-Sibai, M.1    Platt, D.E.2    Haber, M.3    Xue, Y.4    Youhanna, S.C.5
  • 2
    • 73949108745 scopus 로고    scopus 로고
    • Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood
    • Hammer MF, Behar DM, Karafet TM, Mendez FL, Hallmark B, et al. (2009) Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood. Hum Genet 126: 707-717.
    • (2009) Hum Genet , vol.126 , pp. 707-717
    • Hammer, M.F.1    Behar, D.M.2    Karafet, T.M.3    Mendez, F.L.4    Hallmark, B.5
  • 3
    • 79951809698 scopus 로고    scopus 로고
    • Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon
    • Haber M, Platt DE, Badro DA, Xue Y, El-Sibai M, et al. (2011) Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon. Eur J Hum Genet 19: 334-340.
    • (2011) Eur J Hum Genet , vol.19 , pp. 334-340
    • Haber, M.1    Platt, D.E.2    Badro, D.A.3    Xue, Y.4    El-Sibai, M.5
  • 4
    • 33344474976 scopus 로고    scopus 로고
    • The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event
    • Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, et al. (2006) The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event. Am J Hum Genet 78: 487-497.
    • (2006) Am J Hum Genet , vol.78 , pp. 487-497
    • Behar, D.M.1    Metspalu, E.2    Kivisild, T.3    Achilli, A.4    Hadid, Y.5
  • 5
    • 41649090134 scopus 로고    scopus 로고
    • Y-chromosomal diversity in Lebanon is structured by recent historical events
    • Zalloua PA, Xue Y, Khalife J, Makhoul N, Debiane L, et al. (2008) Y-chromosomal diversity in Lebanon is structured by recent historical events. Am J Hum Genet 82: 873-882.
    • (2008) Am J Hum Genet , vol.82 , pp. 873-882
    • Zalloua, P.A.1    Xue, Y.2    Khalife, J.3    Makhoul, N.4    Debiane, L.5
  • 6
    • 77953231974 scopus 로고    scopus 로고
    • Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry
    • Atzmon G, Hao L, Pe'er I, Velez C, Pearlman A, et al. (2010) Abraham's children in the genome era: major Jewish diaspora populations comprise distinct genetic clusters with shared Middle Eastern Ancestry. Am J Hum Genet 86: 850-859.
    • (2010) Am J Hum Genet , vol.86 , pp. 850-859
    • Atzmon, G.1    Hao, L.2    Pe'er, I.3    Velez, C.4    Pearlman, A.5
  • 8
    • 79955576507 scopus 로고    scopus 로고
    • The history of African gene flow into Southern Europeans, Levantines, and Jews
    • Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, et al. (2011) The history of African gene flow into Southern Europeans, Levantines, and Jews. PLoS Genet 7: e1001373.
    • (2011) PLoS Genet , vol.7
    • Moorjani, P.1    Patterson, N.2    Hirschhorn, J.N.3    Keinan, A.4    Hao, L.5
  • 9
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • doi: 10.1371/journal.pgen.1001373
    • Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, et al. (2008) Worldwide human relationships inferred from genome-wide patterns of variation. Science 319doi:10.1371/journal.pgen.1001373: 1100-1104.
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3    Southwick, A.M.4    Casto, A.M.5
  • 10
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander DH, Novembre J, Lange K, (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Res 19: 1655-1664.
    • (2009) Genome Res , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 11
    • 77957999545 scopus 로고    scopus 로고
    • Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population
    • Bray SM, Mulle JG, Dodd AF, Pulver AE, Wooding S, et al. (2010) Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population. Proc Natl Acad Sci U S A 107: 16222-16227.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 16222-16227
    • Bray, S.M.1    Mulle, J.G.2    Dodd, A.F.3    Pulver, A.E.4    Wooding, S.5
  • 12
    • 33750444621 scopus 로고    scopus 로고
    • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    • Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, et al. (2006) A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat Genet 38: 1251-1260.
    • (2006) Nat Genet , vol.38 , pp. 1251-1260
    • Conrad, D.F.1    Jakobsson, M.2    Coop, G.3    Wen, X.4    Wall, J.D.5
  • 13
    • 44949241466 scopus 로고    scopus 로고
    • Inferring human colonization history using a copying model
    • doi: 10.1371/journal.pgen.1000078
    • Hellenthal G, Auton A, Falush D, (2008) Inferring human colonization history using a copying model. PLoS Genet 4: e1000078 doi:10.1371/journal.pgen.1000078.
    • (2008) PLoS Genet , vol.4
    • Hellenthal, G.1    Auton, A.2    Falush, D.3
  • 14
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • Jakobsson M, Scholz SW, Scheet P, Gibbs JR, VanLiere JM, et al. (2008) Genotype, haplotype and copy-number variation in worldwide human populations. Nature 451: 998-1003.
    • (2008) Nature , vol.451 , pp. 998-1003
    • Jakobsson, M.1    Scholz, S.W.2    Scheet, P.3    Gibbs, J.R.4    VanLiere, J.M.5
  • 15
    • 84855427476 scopus 로고    scopus 로고
    • Combining markers into haplotypes can improve population structure inference
    • Gattepaille LM, Jakobsson M, (2012) Combining markers into haplotypes can improve population structure inference. Genetics 190: 159-174.
    • (2012) Genetics , vol.190 , pp. 159-174
    • Gattepaille, L.M.1    Jakobsson, M.2
  • 16
    • 84857477622 scopus 로고    scopus 로고
    • Inference of population structure using dense haplotype data
    • doi: 10.1371/journal.pgen.1002453
    • Lawson DJ, Hellenthal G, Myers S, Falush D, (2012) Inference of population structure using dense haplotype data. PLoS Genet 8: e1002453 doi:10.1371/journal.pgen.1002453.
    • (2012) PLoS Genet , vol.8
    • Lawson, D.J.1    Hellenthal, G.2    Myers, S.3    Falush, D.4
  • 17
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • doi: 10.1371/journal.pgen.0020190
    • Patterson N, Price AL, Reich D, (2006) Population structure and eigenanalysis. PLoS Genet 2: e190 doi:10.1371/journal.pgen.0020190.
    • (2006) PLoS Genet , vol.2
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 18
    • 79958863696 scopus 로고    scopus 로고
    • Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
    • Alexander DH, Lange K, (2011) Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 12: 246.
    • (2011) BMC Bioinformatics , vol.12 , pp. 246
    • Alexander, D.H.1    Lange, K.2
  • 19
    • 84867416880 scopus 로고    scopus 로고
    • SHIPS: Spectral Hierarchical Clustering for the Inference of Population Structure in Genetic Studies
    • doi: 10.1371/journal.pone.0045685
    • Bouaziz M, Paccard C, Guedj M, Ambroise C, (2012) SHIPS: Spectral Hierarchical Clustering for the Inference of Population Structure in Genetic Studies. PLoS ONE 7: e45685 doi:10.1371/journal.pone.0045685.
    • (2012) PLoS ONE , vol.7
    • Bouaziz, M.1    Paccard, C.2    Guedj, M.3    Ambroise, C.4
  • 20
    • 84867422922 scopus 로고    scopus 로고
    • Population identification using genetic data
    • Lawson DJ, Falush D, (2012) Population identification using genetic data. Annu Rev Genomics Hum Genet 13: 337-361.
    • (2012) Annu Rev Genomics Hum Genet , vol.13 , pp. 337-361
    • Lawson, D.J.1    Falush, D.2
  • 21
    • 84859750503 scopus 로고    scopus 로고
    • The Pre-Natufian Epipaleolithic: Long-term Behavioral Trends in the Levant
    • Maher LA, Richter T, Stock JT, (2012) The Pre-Natufian Epipaleolithic: Long-term Behavioral Trends in the Levant. Evol Anthropol 21: 69-81.
    • (2012) Evol Anthropol , vol.21 , pp. 69-81
    • Maher, L.A.1    Richter, T.2    Stock, J.T.3
  • 22
    • 0032221063 scopus 로고    scopus 로고
    • The Natufian culture in the Levant, threshold to the origins of agriculture
    • Bar-Yosef O, (1998) The Natufian culture in the Levant, threshold to the origins of agriculture. Evolutionary Anthropology 6: 159-177.
    • (1998) Evolutionary Anthropology , vol.6 , pp. 159-177
    • Bar-Yosef, O.1
  • 23
    • 75749102229 scopus 로고    scopus 로고
    • A predominantly neolithic origin for European paternal lineages
    • doi: 10.1371/journal.pbio.1000285
    • Balaresque P, Bowden GR, Adams SM, Leung HY, King TE, et al. (2010) A predominantly neolithic origin for European paternal lineages. PLoS Biol 8: e1000285 doi:10.1371/journal.pbio.1000285.
    • (2010) PLoS Biol , vol.8
    • Balaresque, P.1    Bowden, G.R.2    Adams, S.M.3    Leung, H.Y.4    King, T.E.5
  • 24
    • 78649929790 scopus 로고    scopus 로고
    • Ancient DNA from European early neolithic farmers reveals their near eastern affinities
    • doi: 10.1371/journal.pbio.1000536
    • Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, et al. (2010) Ancient DNA from European early neolithic farmers reveals their near eastern affinities. PLoS Biol 8: e1000536 doi:10.1371/journal.pbio.1000536.
    • (2010) PLoS Biol , vol.8
    • Haak, W.1    Balanovsky, O.2    Sanchez, J.J.3    Koshel, S.4    Zaporozhchenko, V.5
  • 25
    • 3042648025 scopus 로고    scopus 로고
    • Estimating the impact of prehistoric admixture on the genome of Europeans
    • Dupanloup I, Bertorelle G, Chikhi L, Barbujani G, (2004) Estimating the impact of prehistoric admixture on the genome of Europeans. Mol Biol Evol 21: 1361-1372.
    • (2004) Mol Biol Evol , vol.21 , pp. 1361-1372
    • Dupanloup, I.1    Bertorelle, G.2    Chikhi, L.3    Barbujani, G.4
  • 26
    • 84860740251 scopus 로고    scopus 로고
    • Mitochondrial DNA signals of late glacial recolonization of Europe from near eastern refugia
    • Pala M, Olivieri A, Achilli A, Accetturo M, Metspalu E, et al. (2012) Mitochondrial DNA signals of late glacial recolonization of Europe from near eastern refugia. Am J Hum Genet 90: 915-924.
    • (2012) Am J Hum Genet , vol.90 , pp. 915-924
    • Pala, M.1    Olivieri, A.2    Achilli, A.3    Accetturo, M.4    Metspalu, E.5
  • 27
    • 59849125888 scopus 로고    scopus 로고
    • Hunters of the Ice Age: The biology of Upper Paleolithic people
    • Holt BM, Formicola V, (2008) Hunters of the Ice Age: The biology of Upper Paleolithic people. Am J Phys Anthropol Suppl 47 pp. 70-99.
    • (2008) Am J Phys Anthropol , Issue.SUPPL. 47 , pp. 70-99
    • Holt, B.M.1    Formicola, V.2
  • 28
    • 84857072889 scopus 로고    scopus 로고
    • Twenty thousand-year-old huts at a hunter-gatherer settlement in eastern Jordan
    • doi: 10.1371/journal.pone.0031447
    • Maher LA, Richter T, Macdonald D, Jones MD, Martin L, et al. (2012) Twenty thousand-year-old huts at a hunter-gatherer settlement in eastern Jordan. PLoS ONE 7: e31447 doi:10.1371/journal.pone.0031447.
    • (2012) PLoS ONE , vol.7
    • Maher, L.A.1    Richter, T.2    Macdonald, D.3    Jones, M.D.4    Martin, L.5
  • 29
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5
  • 31
    • 84856478855 scopus 로고    scopus 로고
    • A linear complexity phasing method for thousands of genomes
    • Delaneau O, Marchini J, Zagury JF, (2012) A linear complexity phasing method for thousands of genomes. Nat Methods 9: 179-181.
    • (2012) Nat Methods , vol.9 , pp. 179-181
    • Delaneau, O.1    Marchini, J.2    Zagury, J.F.3
  • 32
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5
  • 33
    • 67349176068 scopus 로고    scopus 로고
    • Genetics in geographically structured populations: defining, estimating and interpreting F(ST)
    • Holsinger KE, Weir BS, (2009) Genetics in geographically structured populations: defining, estimating and interpreting F(ST). Nat Rev Genet 10: 639-650.
    • (2009) Nat Rev Genet , vol.10 , pp. 639-650
    • Holsinger, K.E.1    Weir, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.