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Volumn 29, Issue 5, 2013, Pages 661-663

CluePedia Cytoscape plugin: Pathway insights using integrated experimental and in silico data

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; PROTEIN;

EID: 84874741556     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt019     Document Type: Article
Times cited : (882)

References (18)
  • 1
    • 33748684439 scopus 로고    scopus 로고
    • On the statistical assessment of classifiers using DNA microarray data
    • Ancona, N. et al. (2006) On the statistical assessment of classifiers using DNA microarray data. BMC Bioinformatics, 7, 387.
    • (2006) BMC Bioinformatics , vol.7 , pp. 387
    • Ancona, N.1
  • 3
    • 34249751614 scopus 로고    scopus 로고
    • Cerebral: A Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
    • DOI 10.1093/bioinformatics/btm057
    • Barsky, A. et al. (2007) Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. Bioinformatics, 23, 1040-1042. (Pubitemid 47050596)
    • (2007) Bioinformatics , vol.23 , Issue.8 , pp. 1040-1042
    • Barsky, A.1    Gardy, J.L.2    Hancock, R.E.W.3    Munzner, T.4
  • 4
    • 64549104807 scopus 로고    scopus 로고
    • ClueGO: A Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
    • Bindea, H. et al. (2009) ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics, 25, 1091-1093.
    • (2009) Bioinformatics , vol.25 , pp. 1091-1093
    • Bindea, G.1
  • 5
    • 78651275182 scopus 로고    scopus 로고
    • Reactome: A database of reactions, pathways and biological processes
    • Croft, D. et al. (2011) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res., 39, D691-D697.
    • (2011) Nucleic Acids Res. , vol.39
    • Croft, D.1
  • 6
    • 0036081062 scopus 로고    scopus 로고
    • The KEGG databases at GenomeNet
    • Kanehisa, M. et al. (2002) The KEGG databases at GenomeNet. Nucleic Acids Res., 30, 42-46.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 42-46
    • Kanehisa, M.1
  • 7
    • 84859204939 scopus 로고    scopus 로고
    • The IntAct molecular interaction database in 2012
    • Kerrien, S. et al. (2012) The IntAct molecular interaction database in 2012. Nucleic Acids Res., 40, D841-D846.
    • (2012) Nucleic Acids Res. , vol.40
    • Kerrien, S.1
  • 8
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara, A. and Griffiths-Jones, S. (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res., 39, D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 9
    • 77949780426 scopus 로고    scopus 로고
    • Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer
    • Mlecnik, B. et al. (2010) Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer. Gastroenterology, 138, 1429-1440.
    • (2010) Gastroenterology , vol.138 , pp. 1429-1440
    • Mlecnik, B.1
  • 10
    • 78149262301 scopus 로고    scopus 로고
    • GeneMANIA Cytoscape plugin: Fast gene function predictions on the desktop
    • Montojo, J. et al. (2010) GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics, 26, 2927-2928.
    • (2010) Bioinformatics , vol.26 , pp. 2927-2928
    • Montojo, J.1
  • 11
    • 78651284406 scopus 로고    scopus 로고
    • ArrayExpress update - -an archive of microarray and high-throughput sequencing-based functional genomics experiments
    • Parkinson, H. et al. (2011) ArrayExpress update - - an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res., 39, D1002-D1004.
    • (2011) Nucleic Acids Res. , vol.39
    • Parkinson, H.1
  • 12
    • 83755163018 scopus 로고    scopus 로고
    • Detecting novel associations in large data sets
    • Reshef, D. et al. (2011) Detecting novel associations in large data sets. Science, 334, 1518-1524.
    • (2011) Science , vol.334 , pp. 1518-1524
    • Reshef, D.1
  • 13
    • 84869054051 scopus 로고    scopus 로고
    • A travel guide to Cytoscape plugins
    • Saito, R. et al. (2012) A travel guide to Cytoscape plugins. Nat. Methods, 9, 1069-1076.
    • (2012) Nat. Methods , vol.9 , pp. 1069-1076
    • Saito, R.1
  • 15
    • 80052945281 scopus 로고    scopus 로고
    • Brownian distance covariance
    • Szekely, H. and Rizzo, M. (2009) Brownian distance covariance. Ann. Appl. Stat., 4, 1236-1265.
    • (2009) Ann. Appl. Stat. , vol.4 , pp. 1236-1265
    • Szekely, G.1    Rizzo, M.2
  • 16
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
    • (2011) Nucleic Acids Res. , vol.39
    • Szklarczyk, D.1
  • 17
    • 58149181372 scopus 로고    scopus 로고
    • Michigan molecular interactions r2: From interacting proteins to pathways
    • Tarcea, V. et al. (2009) Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res., 37, D642-D646.
    • (2009) Nucleic Acids Res. , vol.37
    • Tarcea, V.1
  • 18
    • 58149186499 scopus 로고    scopus 로고
    • MiRecords: An integrated resource for microRNA-target interactions
    • Xiao, F. et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res., 37, D105-D110.
    • (2009) Nucleic Acids Res. , vol.37
    • Xiao, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.