Discrimination of American Cranberry Cultivars and Assessment of Clonal Heterogeneity Using Microsatellite Markers

Plant Molecular Biology Reporter

Volumn 31, Issue 2, 2013, Pages 264-271

  Fajardo, D ^b   Morales, J ^b   Zhu, H ^b   Steffan, S ^a   Harbut, R ^b   Bassil, N ^c   Hummer, K ^c   Polashock, J ^a   Vorsa, N ^d   Zalapa, J ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c USDA ARS National Clonal Germplasm Repository   (United States)

^d RUTGERS UNIVERSITY   (United States)

Author keywords

Fingerprinting; Genetic resources; Germplasm; Simple sequence repeats (SSRs); Vaccinium macrocarpon

Indexed keywords

VACCINIUM MACROCARPON;

EID: 84874540780     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-012-0497-4     Document Type: Article

References (21)

1. Areškevičiūtė J, Paulauskas A, Česonienė L, Daubaras R (2006) Genetic characterisation of wild cranberry (Vaccinium oxycoccos) from Čepkeliai reserve by the RAPD method. Biologija 1: 5-7.
2. Caruso FL, Bristow PR, Oudemans PV (2000) Cranberries: the most intriguing native North American fruit. APSnet Features. doi: 10. 1094/APSnetFeature-2000-1100.
3. Erfani J, Ebadi A, Abdollahi H, Fatahi R (2012) Genetic diversity of some pear cultivars and genotypes using simple sequence repeat (SSR) markers. Plant Mol Biol Rep. doi: 10. 1007/s11105-012-0421-y.
4. Georgi L, Herai RH, Vidal R, Carazzolle MF, Pereira GG, Polashock J, Vorsa N (2012) Cranberry microsatellite marker development from assembled next-generation genomic sequence. Mol Breed. doi: 10. 1007/s11032-011-9613-7.
5. Novy RG, Vorsa N (1994) DNA fingerprinting of cranberry varieties using RAPDs. In: Roper TR (ed) Wisconsin Cranberry School 1994 proceedings.
6. Novy RG, Vorsa N (1995) Identification of intracultivar genetic heterogeneity in cranberry using silver-stained RAPDs. HortScience 30: 600-604.
7. Novy RG, Vorsa N (1996) Evidence for RAPD heteroduplex formation in cranberry: Implications for pedigree and genetic relatedness studies and a source of codominant RAPD markers. Theor Appl Genet 92: 840-849.
8. Novy RG, Kobak C, Goffreda J, Vorsa N (1994) RAPDs identify varietal misclassification and regional divergence in cranberry (Vaccinium macrocarpon Ait.). Theor Appl Genet 88: 1004-1010.
9. Novy RG, Vorsa N, Patten K (1996) Identifying genotypic heterogeneity in McFarlin' cranberry: a randomly-amplified polymorphic DNA (RAPD) and phenotypic analysis. HortScience 2: 210-215.
10. Palombi M, Damiano C (2002) Comparison between RAPD and SSR molecular markers in detecting genetic variation in kiwifruit (Actinidia deliciosa A. Chev). Plant Cell Rep 20: 1061-1066.
11. Panwar P, Nath M, Yadav VK, Kumar A (2010) Comparative evaluation of genetic diversity using RAPD, SSR and cytochrome P450 gene based markers with respect to calcium content in finger millet (Eleusine coracana L. Gaertn.). J Genet 89: 121-133.
12. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
13. Polashock J, Vorsa N (2002) Development of SCAR markers for DNA fingerprinting and germplasm analysis of American cranberry. HortScience 127: 677-687.
14. Potts SM, Yuepeng H, Khan MA, Kushad MM, Rayburn AL, Korban SS (2012) Genetic diversity and characterization of a core collection of Malus germplasm using simple sequence repeats (SSRs). Plant Mol Biol Rep 30: 827-837.
15. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
16. Ravi M, Geethanjali S, Sameeyafarheen F, Maheswaran M (2003) Molecular marker based genetic diversity analysis in rice (Oryza sativa L.) using RAPD and SSR markers. Euphytica 133: 243-252.
17. Roper TR (2008) Cranberry production in Wisconsin. http://www. wiscran. org/user_image/pdf_files/CranProduction08. pdf.
18. Roper TR, Skroch P, Nienhuis J (1995) Barren berry and Searles vines are genetically dissimilar. Cranberries 59: 14-15.
19. Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. J Trends Biotech 23: 48-55.
20. Zhang Q, Li J, Zhao Y, Korban SS, Han Y (2012) Evaluation of genetic diversity in Chinese wild apple species along with apple cultivars using SSR markers. Plant Mol Biol Rep 30: 539-546.
21. Zhu H, Senalik D, McCown BH, Zeldin EL, Speers J, Hyman J, Bassil N, Hummer K, Simon PW, Zalapa JE (2012) Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). Theor Appl Genet 124: 87-96.