메뉴 건너뛰기




Volumn 30, Issue 1, 2012, Pages 227-237

Cranberry microsatellite marker development from assembled next-generation genomic sequence

Author keywords

Cranberry genome; Ericaceae; Simple sequence repeat (SSR)

Indexed keywords

DNA SEQUENCES; GENES; GENOME; PLANTS (BOTANY); SCAFFOLDS;

EID: 84861738123     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9613-7     Document Type: Article
Times cited : (21)

References (23)
  • 1
    • 70350218974 scopus 로고    scopus 로고
    • An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
    • Angiosperm Phylogeny Group
    • Angiosperm Phylogeny Group (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc 161: 105-121.
    • (2009) Bot J Linn Soc , vol.161 , pp. 105-121
  • 2
    • 70350068451 scopus 로고    scopus 로고
    • Blueberry microsatellite markers identify cranberry cultivars
    • Bassil N, Oda A, Hummer KE (2009) Blueberry microsatellite markers identify cranberry cultivars. Acta Hortic 810: 181-186.
    • (2009) Acta Hortic , vol.810 , pp. 181-186
    • Bassil, N.1    Oda, A.2    Hummer, K.E.3
  • 3
    • 44049086018 scopus 로고    scopus 로고
    • Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation
    • Bielenberg DG, Wang YE, Li Z, Zhebentyayeva T, Fan S, Reighard GL, Scorza R, Abbott AG (2008) Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation. Tree Genet Genomes 4: 495-507.
    • (2008) Tree Genet Genomes , vol.4 , pp. 495-507
    • Bielenberg, D.G.1    Wang, Y.E.2    Li, Z.3    Zhebentyayeva, T.4    Fan, S.5    Reighard, G.L.6    Scorza, R.7    Abbott, A.G.8
  • 4
    • 28344439795 scopus 로고    scopus 로고
    • Microsatellite markers for Vaccinium from EST and genomic libraries
    • Boches PS, Bassil NV, Rowland LJ (2005) Microsatellite markers for Vaccinium from EST and genomic libraries. Mol Ecol Notes 5: 657-660.
    • (2005) Mol Ecol Notes , vol.5 , pp. 657-660
    • Boches, P.S.1    Bassil, N.V.2    Rowland, L.J.3
  • 5
    • 0000258608 scopus 로고
    • Determination of ploidy level and nuclear DNA content in blueberry by flow cytometry
    • Costich DE, Ortiz R, Meagher TR, Bruederle LP, Vorsa N (1993) Determination of ploidy level and nuclear DNA content in blueberry by flow cytometry. Theor Appl Genet 86: 1001-1006.
    • (1993) Theor Appl Genet , vol.86 , pp. 1001-1006
    • Costich, D.E.1    Ortiz, R.2    Meagher, T.R.3    Bruederle, L.P.4    Vorsa, N.5
  • 6
    • 66149152188 scopus 로고    scopus 로고
    • Cranberry and urinary tract infections
    • Guay DRP (2009) Cranberry and urinary tract infections. Drugs 69: 775-807.
    • (2009) Drugs , vol.69 , pp. 775-807
    • Guay, D.R.P.1
  • 7
    • 70350043933 scopus 로고    scopus 로고
    • Breeding for fruit rot resistance in Vaccinium macrocarpon
    • Johnson-Cicalese J, Vorsa N, Polashock J (2009) Breeding for fruit rot resistance in Vaccinium macrocarpon. Acta Hortic 810: 191-198.
    • (2009) Acta Hortic , vol.810 , pp. 191-198
    • Johnson-Cicalese, J.1    Vorsa, N.2    Polashock, J.3
  • 8
    • 38549093645 scopus 로고    scopus 로고
    • GDR (Genome Database for Rosaceae): Integrated web-database for Rosaceae genomics and genetics data
    • Jung S, Staton M, Lee T, Blenda A, Svancara R, Abbott A, Main D (2008) GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res 36 (Database issue): D1034-D1040.
    • (2008) Nucleic Acids Res , vol.36 , Issue.Database issue
    • Jung, S.1    Staton, M.2    Lee, T.3    Blenda, A.4    Svancara, R.5    Abbott, A.6    Main, D.7
  • 9
    • 77949440100 scopus 로고    scopus 로고
    • Influence of cranberry proanthocyanidins on formation of biofilms by Streptococcus mutans on saliva-coated apatitic surface and on dental caries development in vivo
    • Koo H, Duarte S, Murata RM, Scott-Anne K, Gregoire S, Watson GE, Singh AP, Vorsa N (2010) Influence of cranberry proanthocyanidins on formation of biofilms by Streptococcus mutans on saliva-coated apatitic surface and on dental caries development in vivo. Caries Res 44: 116-126.
    • (2010) Caries Res , vol.44 , pp. 116-126
    • Koo, H.1    Duarte, S.2    Murata, R.M.3    Scott-Anne, K.4    Gregoire, S.5    Watson, G.E.6    Singh, A.P.7    Vorsa, N.8
  • 11
    • 79956189425 scopus 로고    scopus 로고
    • Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing
    • (accepted for publication)
    • Lutz KA, Wenqin W, Zdepski A, Michael TP (2011) Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing. BMC Biotechnol (accepted for publication).
    • (2011) BMC Biotechnol
    • Lutz, K.A.1    Wenqin, W.2    Zdepski, A.3    Michael, T.P.4
  • 12
    • 77952886150 scopus 로고    scopus 로고
    • Assembly algorithms for next-generation sequencing data
    • Miller J, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics 95: 315-327.
    • (2010) Genomics , vol.95 , pp. 315-327
    • Miller, J.1    Koren, S.2    Sutton, G.3
  • 13
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3: 175-182.
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 14
    • 53449088089 scopus 로고    scopus 로고
    • Anticancer activities of cranberry phytochemicals: an update
    • Neto CC, Amoroso JW, Liberty AM (2008) Anticancer activities of cranberry phytochemicals: an update. Mol Nutr Food Res 52: S18-S27.
    • (2008) Mol Nutr Food Res , vol.52
    • Neto, C.C.1    Amoroso, J.W.2    Liberty, A.M.3
  • 15
    • 0029610842 scopus 로고
    • Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers
    • Oetting WS, Lee HK, Flanders DJ, Wiesner GL, Sellers TA, King RA (1995) Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers. Genomics 30: 450-458.
    • (1995) Genomics , vol.30 , pp. 450-458
    • Oetting, W.S.1    Lee, H.K.2    Flanders, D.J.3    Wiesner, G.L.4    Sellers, T.A.5    King, R.A.6
  • 16
    • 70349653650 scopus 로고    scopus 로고
    • Phytochemicals of cranberries and cranberry products: Characterization, potential health effects, and processing stability
    • Pappas E, Schaich KM (2009) Phytochemicals of cranberries and cranberry products: Characterization, potential health effects, and processing stability. Crit Rev Food Sci Nutr 49: 741-781.
    • (2009) Crit Rev Food Sci Nutr , vol.49 , pp. 741-781
    • Pappas, E.1    Schaich, K.M.2
  • 17
    • 34447527746 scopus 로고    scopus 로고
    • Evidences of the cardioprotective potential of fruits: the case of cranberries
    • Ruel G, Couillard C (2007) Evidences of the cardioprotective potential of fruits: the case of cranberries. Mol Nutr Food Res 51: 692-701.
    • (2007) Mol Nutr Food Res , vol.51 , pp. 692-701
    • Ruel, G.1    Couillard, C.2
  • 18
    • 0033953635 scopus 로고    scopus 로고
    • An economic method for the fluorescent labeling of PCR fragments
    • Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18: 233-234.
    • (2000) Nat Biotechnol , vol.18 , pp. 233-234
    • Schuelke, M.1
  • 19
    • 0027158760 scopus 로고
    • A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications
    • Stewart CN, Via LE (1993) A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. BioTechniques 14: 748-750.
    • (1993) BioTechniques , vol.14 , pp. 748-750
    • Stewart, C.N.1    Via, L.E.2
  • 20
    • 80052822201 scopus 로고    scopus 로고
    • USDA NASS. Accessed 18 April 2011
    • USDA NASS (2011) Noncitrus fruits and nuts 2010 Preliminary Summary. http://usda. mannlib. cornell. edu/usda/nass/NoncFruiNu//2010s/2011/NoncFruiNu-01-21-2011. pdf. Accessed 18 April 2011.
    • (2011) Noncitrus Fruits and Nuts 2010 Preliminary Summary
  • 21
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: features and applications
    • Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23: 48-55.
    • (2005) Trends Biotechnol , vol.23 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 22
    • 50449103971 scopus 로고    scopus 로고
    • Antibacterial effects of American cranberry (Vaccinium macrocarpon) concentrate on foodborne pathogens
    • Wu VCH, Qiu X, Bushway A, Harper L (2008) Antibacterial effects of American cranberry (Vaccinium macrocarpon) concentrate on foodborne pathogens. LWT-Food Sci Technol 41: 1834-1841.
    • (2008) LWT-Food Sci Technol , vol.41 , pp. 1834-1841
    • Wu, V.C.H.1    Qiu, X.2    Bushway, A.3    Harper, L.4
  • 23
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.