-
1
-
-
16344389891
-
PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order
-
Caraux G, Pinloche S (2005) PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order. Bioinformatics 21: 1280-1281.
-
(2005)
Bioinformatics
, vol.21
, pp. 1280-1281
-
-
Caraux, G.1
Pinloche, S.2
-
2
-
-
33845896541
-
Comparison of polycyclic aromatic hydrocarbons in sediments from the Songhuajiang River (China) during different sampling seasons
-
Guo W, He MC, Yang ZF, Lin CY, Quan XC, Wang HZ (2007) Comparison of polycyclic aromatic hydrocarbons in sediments from the Songhuajiang River (China) during different sampling seasons. J Environ Sci Health A 42: 119-127.
-
(2007)
J Environ Sci Health A
, vol.42
, pp. 119-127
-
-
Guo, W.1
He, M.C.2
Yang, Z.F.3
Lin, C.Y.4
Quan, X.C.5
Wang, H.Z.6
-
3
-
-
34248159046
-
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes
-
He ZL, Gentry TJ, Schadt CW, Wu LY, Liebich J, Chong SC, Huang ZJ, Wu WM, Gu BH, Jardine P, Criddle C, Zhou J (2007) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J 1: 67-77.
-
(2007)
ISME J
, vol.1
, pp. 67-77
-
-
He, Z.L.1
Gentry, T.J.2
Schadt, C.W.3
Wu, L.Y.4
Liebich, J.5
Chong, S.C.6
Huang, Z.J.7
Wu, W.M.8
Gu, B.H.9
Jardine, P.10
Criddle, C.11
Zhou, J.12
-
4
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He ZL, Deng Y, van Nostrand JD, Tu QC, Xu MY, Hemme CL, Li XY, Wu LY, Gentry TJ, Yin YF, Liebich J, Hazen TC, Zhou JZ (2010) GeoChip 3. 0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 4: 1167-1179.
-
(2010)
ISME J
, vol.4
, pp. 1167-1179
-
-
He, Z.L.1
Deng, Y.2
van Nostrand, J.D.3
Tu, Q.C.4
Xu, M.Y.5
Hemme, C.L.6
Li, X.Y.7
Wu, L.Y.8
Gentry, T.J.9
Yin, Y.F.10
Liebich, J.11
Hazen, T.C.12
Zhou, J.Z.13
-
5
-
-
77951499585
-
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
-
Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu LY, Barua S, Barry K, Tringe SG, Watson DB, He ZL, Hazen TC, Tiedje JM, Rubin EM, Zhou JZ (2010) Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J 4: 660-672.
-
(2010)
ISME J
, vol.4
, pp. 660-672
-
-
Hemme, C.L.1
Deng, Y.2
Gentry, T.J.3
Fields, M.W.4
Wu, L.Y.5
Barua, S.6
Barry, K.7
Tringe, S.G.8
Watson, D.B.9
He, Z.L.10
Hazen, T.C.11
Tiedje, J.M.12
Rubin, E.M.13
Zhou, J.Z.14
-
6
-
-
77952245252
-
Succession of the bacterial community and dynamics of hydrogen producers in a hydrogen-producing bioreactor
-
Huang Y, Zong WM, Yan X, Wang RF, Hemme CL, Zhou JZ, Zhou ZH (2010) Succession of the bacterial community and dynamics of hydrogen producers in a hydrogen-producing bioreactor. Appl Environ Microbiol 76: 3387-3390.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3387-3390
-
-
Huang, Y.1
Zong, W.M.2
Yan, X.3
Wang, R.F.4
Hemme, C.L.5
Zhou, J.Z.6
Zhou, Z.H.7
-
7
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt RA, Qiu XY, Wu LY, Roh Y, Palumbo AV, Tiedje JM, Zhou JH (2001) Simultaneous recovery of RNA and DNA from soils and sediments. Appl Environ Microbiol 67: 4495-4503.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
Qiu, X.Y.2
Wu, L.Y.3
Roh, Y.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.H.7
-
8
-
-
70349860176
-
Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field
-
Liang YT, Li GH, van Nostrand JD, He ZL, Wu LY, Den Y, Zhang X, Zhou JZ (2009a) Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field. FEMS Microbiol Ecol 70: 324-333.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 324-333
-
-
Liang, Y.T.1
Li, G.H.2
van Nostrand, J.D.3
He, Z.L.4
Wu, L.Y.5
Den, Y.6
Zhang, X.7
Zhou, J.Z.8
-
9
-
-
61849184404
-
Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil
-
Liang YT, van Nostrand JD, Wang J, Zhang X, Zhou JZ, Li GH (2009b) Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil. Chemosphere 75: 193-199.
-
(2009)
Chemosphere
, vol.75
, pp. 193-199
-
-
Liang, Y.T.1
van Nostrand, J.D.2
Wang, J.3
Zhang, X.4
Zhou, J.Z.5
Li, G.H.6
-
10
-
-
77249141478
-
Polycyclic aromatic hydrocarbons in the surface soil of Shanghai, China: concentrations, distribution and sources
-
Liu Y, Chen L, Zhao JF, Wei YP, Pan ZY, Meng XZ, Huang QH, Li WY (2010a) Polycyclic aromatic hydrocarbons in the surface soil of Shanghai, China: concentrations, distribution and sources. Org Geochem 41: 355-362.
-
(2010)
Org Geochem
, vol.41
, pp. 355-362
-
-
Liu, Y.1
Chen, L.2
Zhao, J.F.3
Wei, Y.P.4
Pan, Z.Y.5
Meng, X.Z.6
Huang, Q.H.7
Li, W.Y.8
-
11
-
-
77957369352
-
Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes
-
Liu WZ, Wang AJ, Cheng SA, Logan BE, Yu H, Deng Y, van Nostrand JD, Wu LY, He ZL, Zhou JZ (2010b) Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes. Environ Sci Technol 44: 7729-7735.
-
(2010)
Environ Sci Technol
, vol.44
, pp. 7729-7735
-
-
Liu, W.Z.1
Wang, A.J.2
Cheng, S.A.3
Logan, B.E.4
Yu, H.5
Deng, Y.6
van Nostrand, J.D.7
Wu, L.Y.8
He, Z.L.9
Zhou, J.Z.10
-
12
-
-
0035015990
-
Polycyclic aromatic hydrocarbons in sediments from the Pearl river and estuary, China: spatial and temporal distribution and sources
-
Mai BX, Fu JM, Zhang G, Lin Z, Min YS, Sheng GY, Wang XM (2001) Polycyclic aromatic hydrocarbons in sediments from the Pearl river and estuary, China: spatial and temporal distribution and sources. Appl Geochem 16: 1429-1445.
-
(2001)
Appl Geochem
, vol.16
, pp. 1429-1445
-
-
Mai, B.X.1
Fu, J.M.2
Zhang, G.3
Lin, Z.4
Min, Y.S.5
Sheng, G.Y.6
Wang, X.M.7
-
13
-
-
33746191929
-
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
-
McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD (2006) The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc Natl Acad Sci USA 103: 15582-15587.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15582-15587
-
-
McLeod, M.P.1
Warren, R.L.2
Hsiao, W.W.3
Araki, N.4
Myhre, M.5
Fernandes, C.6
Miyazawa, D.7
Wong, W.8
Lillquist, A.L.9
Wang, D.10
Dosanjh, M.11
Hara, H.12
Petrescu, A.13
Morin, R.D.14
Yang, G.15
Stott, J.M.16
Schein, J.E.17
Shin, H.18
Smailus, D.19
Siddiqui, A.S.20
Marra, M.A.21
Jones, S.J.22
Holt, R.23
Brinkman, F.S.24
Miyauchi, K.25
Fukuda, M.26
Davies, J.E.27
Mohn, W.W.28
Eltis, L.D.29
more..
-
14
-
-
33847400228
-
Isolation and characterization of a gene cluster involved in PAH degradation in Mycobacterium sp. strain SNP11: expression in Mycobacterium smegmatis mc(2)155
-
Pagnout C, Frache G, Poupin P, Maunit B, Muller JF, Ferard JF (2007) Isolation and characterization of a gene cluster involved in PAH degradation in Mycobacterium sp. strain SNP11: expression in Mycobacterium smegmatis mc(2)155. Res Microbiol 158: 175-86.
-
(2007)
Res Microbiol
, vol.158
, pp. 175-186
-
-
Pagnout, C.1
Frache, G.2
Poupin, P.3
Maunit, B.4
Muller, J.F.5
Ferard, J.F.6
-
15
-
-
33749863920
-
Genome sequence of the bioplastic-producing 'Knallgas' bacterium Ralstonia eutropha H16
-
Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Potter M, Schwartz E, Strittmatter A, Voss I, Gottschalk G, Steinbuechel A, Friedrich B, Bowien B (2006) Genome sequence of the bioplastic-producing 'Knallgas' bacterium Ralstonia eutropha H16. Nat Biotech 24: 1257-1262.
-
(2006)
Nat Biotech
, vol.24
, pp. 1257-1262
-
-
Pohlmann, A.1
Fricke, W.F.2
Reinecke, F.3
Kusian, B.4
Liesegang, H.5
Cramm, R.6
Eitinger, T.7
Ewering, C.8
Potter, M.9
Schwartz, E.10
Strittmatter, A.11
Voss, I.12
Gottschalk, G.13
Steinbuechel, A.14
Friedrich, B.15
Bowien, B.16
-
16
-
-
0034034019
-
A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli
-
Saito A, Iwabuchi T, Harayama S (2000) A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli. J Bacteriol 182: 2134-2141.
-
(2000)
J Bacteriol
, vol.182
, pp. 2134-2141
-
-
Saito, A.1
Iwabuchi, T.2
Harayama, S.3
-
17
-
-
39649117129
-
of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126
-
Schuler L, Ni Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN (2008) of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126. Appl Environ Microbiol 74: 1050-1057.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1050-1057
-
-
Schuler, L.1
Ni Chadhain, S.M.2
Jouanneau, Y.3
Meyer, C.4
Zylstra, G.J.5
Hols, P.6
Agathos, S.N.7
-
18
-
-
4544312613
-
Multiplicity of 2,3-dihydroxybiphenyl dioxygenase genes in the gram-positive polychlorinated biphenyl degrading bacterium Rhodococcus rhodochrous K37
-
Taguchi K, Motoyama M, Kudo T (2004) Multiplicity of 2, 3-dihydroxybiphenyl dioxygenase genes in the gram-positive polychlorinated biphenyl degrading bacterium Rhodococcus rhodochrous K37. Biosci Biotechnol Biochem 68: 787-795.
-
(2004)
Biosci Biotechnol Biochem
, vol.68
, pp. 787-795
-
-
Taguchi, K.1
Motoyama, M.2
Kudo, T.3
-
19
-
-
70349696012
-
GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer
-
van Nostrand JD, Wu WM, Wu LY, Deng Y, Carley J, Carroll S, He ZL, Gu BH, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou JZ (2009) GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environ Microbiol 11: 2611-2626.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2611-2626
-
-
van Nostrand, J.D.1
Wu, W.M.2
Wu, L.Y.3
Deng, Y.4
Carley, J.5
Carroll, S.6
He, Z.L.7
Gu, B.H.8
Luo, J.9
Criddle, C.S.10
Watson, D.B.11
Jardine, P.M.12
Marsh, T.L.13
Tiedje, J.M.14
Hazen, T.C.15
Zhou, J.Z.16
-
20
-
-
47749143312
-
Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the gulf of Mexico
-
Wu L, Kellogg L, Devol AH, Tiedje JM, Zhou J (2008) Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the gulf of Mexico. Appl Environ Microbiol 74: 4516-4529.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4516-4529
-
-
Wu, L.1
Kellogg, L.2
Devol, A.H.3
Tiedje, J.M.4
Zhou, J.5
-
21
-
-
77954253615
-
Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface
-
Wu WM, Carley J, Green SJ, Luo J, Kelly SD, van Nostrand J, Lowe K, Mehlhorn T, Carroll S, Boonchayanant B, Lofller FE, Watson D, Kemner KM, Zhou JZ, Kitanidis PK, Kostka JE, Jardine PM, Criddle CS (2010) Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface. Environ Sci Technol 44: 5104-5111.
-
(2010)
Environ Sci Technol
, vol.44
, pp. 5104-5111
-
-
Wu, W.M.1
Carley, J.2
Green, S.J.3
Luo, J.4
Kelly, S.D.5
van Nostrand, J.6
Lowe, K.7
Mehlhorn, T.8
Carroll, S.9
Boonchayanant, B.10
Lofller, F.E.11
Watson, D.12
Kemner, K.M.13
Zhou, J.Z.14
Kitanidis, P.K.15
Kostka, J.E.16
Jardine, P.M.17
Criddle, C.S.18
-
22
-
-
77954833961
-
Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation
-
Xu MY, Wu WM, Wu LY, He ZL, van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu BH, Watson D, Jardine PM, Marsh TL, Tiedje JM, Hazen T, Criddle CS, Zhou JZ (2010) Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. ISME J 4: 1060-1070.
-
(2010)
ISME J
, vol.4
, pp. 1060-1070
-
-
Xu, M.Y.1
Wu, W.M.2
Wu, L.Y.3
He, Z.L.4
van Nostrand, J.D.5
Deng, Y.6
Luo, J.7
Carley, J.8
Ginder-Vogel, M.9
Gentry, T.J.10
Gu, B.H.11
Watson, D.12
Jardine, P.M.13
Marsh, T.L.14
Tiedje, J.M.15
Hazen, T.16
Criddle, C.S.17
Zhou, J.Z.18
-
23
-
-
77952004006
-
Experimental losses and optimum conditions for phenanthrene extraction
-
Zhang ZY, Inoue C, Li GH (2010) Experimental losses and optimum conditions for phenanthrene extraction. Tsinghua Sci Technol 15: 414-417.
-
(2010)
Tsinghua Sci Technol
, vol.15
, pp. 414-417
-
-
Zhang, Z.Y.1
Inoue, C.2
Li, G.H.3
-
24
-
-
45549097485
-
Spatial scaling of functional gene diversity across various microbial taxa
-
Zhou JZ, Kang S, Schadt CW, Garten CT (2008) Spatial scaling of functional gene diversity across various microbial taxa. Proc Natl Acad Sci USA 105: 7768-7773.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7768-7773
-
-
Zhou, J.Z.1
Kang, S.2
Schadt, C.W.3
Garten, C.T.4
|