메뉴 건너뛰기




Volumn 20, Issue 1, 2013, Pages 1-16

Quantitative trait loci mapping in Brassica rapa revealed the structural and functional conservation of genetic loci governing morphological and yield component traits in the A, B, and C subgenomes of Brassica species

Author keywords

Brassica rapa; conserved genome blocks; morphological traits; quantitative trait loci (QTL); single nucleotide polymorphism (SNP)

Indexed keywords

ARABIDOPSIS; ARTICLE; BRASSICA JUNCEA; BRASSICA RAPA; CONTROLLED STUDY; GENE EXPRESSION; GENE LOCUS; GENE STRUCTURE; GENETIC TRAIT; MORPHOLOGY; NONHUMAN; PLANT GENETICS; PLANT GENOME; QUANTITATIVE TRAIT LOCUS; RAPESEED; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84874490403     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dss029     Document Type: Article
Times cited : (53)

References (36)
  • 1
    • 33744460487 scopus 로고    scopus 로고
    • Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: The genetic origin of clubroot resistance
    • Suwabe, K., Tsukazaki, H., Iketani, H., et al. 2006, Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance, Genetics, 173, 309-19.
    • (2006) Genetics , vol.173 , pp. 309-319
    • Suwabe, K.1    Tsukazaki, H.2    Iketani, H.3
  • 2
    • 78649303831 scopus 로고    scopus 로고
    • Development of a high density integrated reference genetic linkage map for the multinational Brassica rapa Genome Sequencing Project
    • Li, X., Ramchiary, N., Choi, S.R., et al. 2010, Development of a high density integrated reference genetic linkage map for the multinational Brassica rapa Genome Sequencing Project, Genome, 53, 939-47.
    • (2010) Genome , vol.53 , pp. 939-947
    • Li, X.1    Ramchiary, N.2    Choi, S.R.3
  • 3
    • 0029787568 scopus 로고    scopus 로고
    • Mapping a QTL for oleic acid concentration in spring turnip rape (Brassica rapa ssp. oleifera)
    • Tanhuanpaa, P.K., Vilkke, J.P. and Vikki, H.J. 1996, Mapping a QTL for oleic acid concentration in spring turnip rape (Brassica rapa ssp. oleifera), Theor. Appl. Genet., 92, 952-6.
    • (1996) Theor. Appl. Genet. , vol.92 , pp. 952-956
    • Tanhuanpaa, P.K.1    Vilkke, J.P.2    Vikki, H.J.3
  • 4
    • 44949175103 scopus 로고    scopus 로고
    • Quantitative trait loci for glucosinolate accumulation in Brassica rapa leaves
    • Lou, P., Zhao, J., He, H., et al. 2008, Quantitative trait loci for glucosinolate accumulation in Brassica rapa leaves, New Phytol., 179, 1017-32.
    • (2008) New Phytol. , vol.179 , pp. 1017-1032
    • Lou, P.1    Zhao, J.2    He, H.3
  • 5
    • 84865201182 scopus 로고    scopus 로고
    • Structural and functional comparative mapping between the Brassica A genomes in allotetraploid Brassica napus and diploid Brassica rapa
    • Jiang, C., Ramchiary, N., Ma, Y., et al. 2011, Structural and functional comparative mapping between the Brassica A genomes in allotetraploid Brassica napus and diploid Brassica rapa, Theor. Appl. Genet., 123, 927-41.
    • (2011) Theor. Appl. Genet. , vol.123 , pp. 927-941
    • Jiang, C.1    Ramchiary, N.2    Ma, Y.3
  • 7
    • 33846787012 scopus 로고    scopus 로고
    • Identification of quantitative trait loci for resistance to Xanthomonas campestris pv.campestris in Brassica rapa
    • Soengas, P., Hand, P., Vicente, J.G., Pole, J.M. and Pink, D.A. 2007, Identification of quantitative trait loci for resistance to Xanthomonas campestris pv.campestris in Brassica rapa, Theor. Appl. Genet., 114, 637-45.
    • (2007) Theor. Appl. Genet. , vol.114 , pp. 637-645
    • Soengas, P.1    Hand, P.2    Vicente, J.G.3    Pole, J.M.4    Pink, D.A.5
  • 8
    • 36348978330 scopus 로고    scopus 로고
    • Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa
    • Lou, P., Zhao, J.J., Kim, J.S., et al. 2007, Quantitative trait loci for flowering time and morphological traits in multiple populations of Brassica rapa, J. Exp. Bot., 58, 4005-16.
    • (2007) J. Exp. Bot. , vol.58 , pp. 4005-4016
    • Lou, P.1    Zhao, J.J.2    Kim, J.S.3
  • 9
    • 75349086497 scopus 로고    scopus 로고
    • A Brassica rapa linkage map of EST-based SNP markers for identification of candidate genes controlling flowering time and leaf morphological traits
    • Li, F., Kitashiba, H., Inaba, K. and Nishio, T. 2009, A Brassica rapa linkage map of EST-based SNP markers for identification of candidate genes controlling flowering time and leaf morphological traits, DNA Res., 16, 311-23.
    • (2009) DNA Res. , vol.16 , pp. 311-323
    • Li, F.1    Kitashiba, H.2    Inaba, K.3    Nishio, T.4
  • 10
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thali-ana
    • Parkin, I.A.P., Gulden, S.M., Sharpe, A.G., et al. 2005, Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thali-ana, Genetics, 171, 765-81.
    • (2005) Genetics , vol.171 , pp. 765-781
    • Parkin, I.A.P.1    Gulden, S.M.2    Sharpe, A.G.3
  • 11
    • 41549133928 scopus 로고    scopus 로고
    • Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: Homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    • Panjabi, P., Jagannath, A., Bisht, N., et al. 2008, Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes, BMC Genomics, 9, 113.
    • (2008) BMC Genomics , vol.9 , pp. 113
    • Panjabi, P.1    Jagannath, A.2    Bisht, N.3
  • 12
    • 71349085860 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication
    • Mun, J.H., Kwon, S.J., Yang, T.J., et al. 2009, Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication, Genome Biol., 10, R111.
    • (2009) Genome Biol. , vol.10
    • Mun, J.H.1    Kwon, S.J.2    Yang, T.J.3
  • 13
    • 0030454609 scopus 로고    scopus 로고
    • Comparative genome mapping in Brassica
    • Lagercrantz, U. and Lydiate, D.J. 1996, Comparative genome mapping in Brassica, Genetics, 144, 1903-10.
    • (1996) Genetics , vol.144 , pp. 1903-1910
    • Lagercrantz, U.1    Lydiate, D.J.2
  • 14
    • 33751014556 scopus 로고    scopus 로고
    • The ABC's of comparative genomics in the Brassicaceae: Building blocks of crucifer genomes
    • Schranz, M.E., Lysak, M.A. and Mitchell-Olds, T. 2006, The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes, Trends Plant Sci., 11, 535-42.
    • (2006) Trends Plant Sci. , vol.11 , pp. 535-542
    • Schranz, M.E.1    Lysak, M.A.2    Mitchell-Olds, T.3
  • 15
    • 18844366608 scopus 로고    scopus 로고
    • The Korea Brassica Genome Project: A glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis
    • Yang, T.J., Kim, J.S., Lim, K.B., et al. 2005, The Korea Brassica Genome Project: a glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis, Comp. Funct. Genomics, 6, 138-46.
    • (2005) Comp. Funct. Genomics , vol.6 , pp. 138-146
    • Yang, T.J.1    Kim, J.S.2    Lim, K.B.3
  • 16
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • Wang, X., Wang, H., Wang, J., et al. 2011, The genome of the mesopolyploid crop species Brassica rapa, Nat. Genet., 43, 1035-9.
    • (2011) Nat. Genet. , vol.43 , pp. 1035-1039
    • Wang, X.1    Wang, H.2    Wang, J.3
  • 17
    • 60549111967 scopus 로고    scopus 로고
    • Map based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa
    • Zhang, J., Lu, Y., Yuan, Y., et al. 2009, Map based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa, Plant Mol. Biol., 69, 553-63.
    • (2009) Plant Mol. Biol. , vol.69 , pp. 553-563
    • Zhang, J.1    Lu, Y.2    Yuan, Y.3
  • 18
    • 80054708224 scopus 로고    scopus 로고
    • Genic microsatellite markers in Brassica rapa: Development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives
    • Ramchiary, N., Nguyen, D.V., Li, X., et al. 2011, Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives, DNA Res., 18, 305-20.
    • (2011) DNA Res. , vol.18 , pp. 305-320
    • Ramchiary, N.1    Nguyen, D.V.2    Li, X.3
  • 20
    • 34648835383 scopus 로고    scopus 로고
    • Mapping of yield influencing QTL in Brassica juncea: Implications for breeding of a major oilseed crop of dryland areas
    • Ramchiary, N., Padmaja, K.L., Sharma, S., et al. 2007, Mapping of yield influencing QTL in Brassica juncea: implications for breeding of a major oilseed crop of dryland areas, Theor. Appl. Genet., 115, 807-17.
    • (2007) Theor. Appl. Genet. , vol.115 , pp. 807-817
    • Ramchiary, N.1    Padmaja, K.L.2    Sharma, S.3
  • 21
    • 33745879786 scopus 로고    scopus 로고
    • Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 1. Identification of genomic regions from winter germplasm
    • Quijada, P.A., Udall, J.A., Lambert, B. and Osborn, T.C. 2006, Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 1. Identification of genomic regions from winter germplasm, Theor. Appl. Genet., 113, 549-61.
    • (2006) Theor. Appl. Genet. , vol.113 , pp. 549-561
    • Quijada, P.A.1    Udall, J.A.2    Lambert, B.3    Osborn, T.C.4
  • 22
    • 33746383993 scopus 로고    scopus 로고
    • Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 2. Identification of alleles from un-adapted germplasm
    • Udall, J.A., Quijada, P.A., Lambert, B. and Osborn, T.C. 2006, Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.): 2. Identification of alleles from un-adapted germplasm, Theor. Appl. Genet., 113, 597-609.
    • (2006) Theor. Appl. Genet. , vol.113 , pp. 597-609
    • Udall, J.A.1    Quijada, P.A.2    Lambert, B.3    Osborn, T.C.4
  • 23
    • 33748674197 scopus 로고    scopus 로고
    • AUGUSTUS at EGASP: Using EST, protein and genomic alignments for improved gene prediction in the human genome
    • Stanke, M., Tzvetkova, A. and Morgenstern, B. 2006, AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome, Genome Biol., 7, S11.
    • (2006) Genome Biol. , vol.7
    • Stanke, M.1    Tzvetkova, A.2    Morgenstern, B.3
  • 24
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. 2009, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 25
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, R., Li, Y., Kristiansen, K. and Wang, J. 2008, Mapping short DNA sequencing reads and calling variants using mapping quality scores, Genome Res., 18, 1851-8.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 26
    • 72449169361 scopus 로고    scopus 로고
    • Application of high-resolution DNA melting for geno-typing and variant scanning of diploid and autotetra-ploid potato
    • De Koeyer, D., Douglass, K., Murphy, A., et al. 2010, Application of high-resolution DNA melting for geno-typing and variant scanning of diploid and autotetra-ploid potato, Mol. Breed., 25, 67-90.
    • (2010) Mol. Breed. , vol.25 , pp. 67-90
    • De Koeyer, D.1    Douglass, K.2    Murphy, A.3
  • 27
    • 63449139874 scopus 로고    scopus 로고
    • Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray
    • Lee, S.C., Lim, M.H., Kim, J.A., et al. 2008, Transcriptome analysis in Brassica rapa under the abiotic stresses using Brassica 24K oligo microarray, Mol. Cells, 26, 595-605.
    • (2008) Mol. Cells , vol.26 , pp. 595-605
    • Lee, S.C.1    Lim, M.H.2    Kim, J.A.3
  • 28
    • 84860138965 scopus 로고    scopus 로고
    • Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1,-2, and-3 are the dominant paralogs
    • Plackett, A.R.G., Powers, S.J., Fernandez-Garcia, N., et al. 2012, Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1,-2, and-3 are the dominant paralogs, Plant Cell, 24, 941-60.
    • (2012) Plant Cell , vol.24 , pp. 941-960
    • Plackett, A.R.G.1    Powers, S.J.2    Fernandez-Garcia, N.3
  • 29
    • 23044455690 scopus 로고    scopus 로고
    • Cytokinin oxidase regulates rice grain production
    • Ashikari, M., Sakakibara, H., Lin, S., et al. 2005, Cytokinin oxidase regulates rice grain production, Science, 309, 741-5.
    • (2005) Science , vol.309 , pp. 741-745
    • Ashikari, M.1    Sakakibara, H.2    Lin, S.3
  • 30
    • 79952304237 scopus 로고    scopus 로고
    • Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana
    • Bartrina, I., Otto, E., Strnad, M., Werner, T. and Schmulling, T. 2011, Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana, Plant Cell, 23, 69-80.
    • (2011) Plant Cell , vol.23 , pp. 69-80
    • Bartrina, I.1    Otto, E.2    Strnad, M.3    Werner, T.4    Schmulling, T.5
  • 31
    • 34249696507 scopus 로고    scopus 로고
    • GASA4, one of the 14-member Arabidopsis GASA family of small polypeptides, regulates flowering and seed development
    • Roxrud, I., Lid, S.E., Fletcher, J.C., Schmidt, E.D. and Opsahl-Sorteberg, H.G. 2007, GASA4, one of the 14-member Arabidopsis GASA family of small polypeptides, regulates flowering and seed development, Plant Cell Physiol., 48, 471-83.
    • (2007) Plant Cell Physiol. , vol.48 , pp. 471-483
    • Roxrud, I.1    Lid, S.E.2    Fletcher, J.C.3    Schmidt, E.D.4    Opsahl-Sorteberg, H.G.5
  • 32
    • 0141872963 scopus 로고    scopus 로고
    • The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis
    • Kim, J.H., Choi, D. and Kende, H. 2003, The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis, Plant J., 36, 94-104.
    • (2003) Plant J. , vol.36 , pp. 94-104
    • Kim, J.H.1    Choi, D.2    Kende, H.3
  • 33
    • 33751034533 scopus 로고    scopus 로고
    • Asymmetric leaves1 and auxin activities converge to repress BREVIPEDICELLUS expression and promote leaf development in Arabidopsis
    • Hay, A., Barkoulas, M. and Tsiantis, M. 2006, Asymmetric leaves1 and auxin activities converge to repress BREVIPEDICELLUS expression and promote leaf development in Arabidopsis, Development, 133, 3955-61.
    • (2006) Development , vol.133 , pp. 3955-3961
    • Hay, A.1    Barkoulas, M.2    Tsiantis, M.3
  • 34
    • 57749102703 scopus 로고    scopus 로고
    • Genetic analysis reveals that C19-GA 2-oxidation is a major gibber-ellin inactivation pathway in Arabidopsis
    • Rieu, I., Eriksson, S., Powers, S.J., et al. 2008, Genetic analysis reveals that C19-GA 2-oxidation is a major gibber-ellin inactivation pathway in Arabidopsis, Plant Cell, 20, 2420-36.
    • (2008) Plant Cell , vol.20 , pp. 2420-2436
    • Rieu, I.1    Eriksson, S.2    Powers, S.J.3
  • 35
    • 84859564587 scopus 로고    scopus 로고
    • Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexa-ploidy
    • Tang, H., Woodhouse, M.R., Cheng, F., et al. 2012, Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexa-ploidy, Genetics, 190, 1563-74.
    • (2012) Genetics , vol.190 , pp. 1563-1574
    • Tang, H.1    Woodhouse, M.R.2    Cheng, F.3
  • 36
    • 0036859948 scopus 로고    scopus 로고
    • Characterization and effects of the replicated flowering time gene FLC in Brassica rapa
    • Schranz, M.E., Quijada, P., Sung, S-B., Lukens, L., Amasino, R. and Osborn, T.C. 2002, Characterization and effects of the replicated flowering time gene FLC in Brassica rapa, Genetics, 162, 1457-68.
    • (2002) Genetics , vol.162 , pp. 1457-1468
    • Schranz, M.E.1    Quijada, P.2    Sung, S.-B.3    Lukens, L.4    Amasino, R.5    Osborn, T.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.