Dating the origin and dispersal of hepatitis B virus infection in humans and primates

Hepatology

Volumn 57, Issue 3, 2013, Pages 908-916

  Paraskevis, Dimitrios ^a   Magiorkinis, Gkikas ^a,b   Magiorkinis, Emmanouil ^a   Ho, Simon Y W ^c   Belshaw, Robert ^b   Allain, Jean Pierre ^d   Hatzakis, Angelos ^a  

^a UNIVERSITY OF ATHENS MEDICAL SCHOOL   (Greece)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF SYDNEY   (Australia)

^d UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHEOLOGY; ARTICLE; CALIBRATION; EPIDEMIC; GENETIC VARIABILITY; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMAN; MOLECULAR CLOCK; NONHUMAN; PHYLOGENY; POPULATION RESEARCH; PRIMATE; PRIORITY JOURNAL;

AFRICA; ANIMALS; ASIA; BAYES THEOREM; DNA, VIRAL; EUROPE; EVOLUTION, MOLECULAR; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMAN MIGRATION; HUMANS; HYLOBATES; MOLECULAR EPIDEMIOLOGY; PAN TROGLODYTES; PHYLOGENY; PHYLOGEOGRAPHY; PONGO; PRIMATE DISEASES;

EID: 84874461841     PISSN: 02709139     EISSN: 15273350     Source Type: Journal    
DOI: 10.1002/hep.26079     Document Type: Article

References (45)

1. Wiersma S. The global burden of disease of viral hepatitis. Viral Hepat 2011; 19: 9-10.
2. Kramvis A, Kew MC. Epidemiology of hepatitis B virus in Africa, its genotypes and clinical associations of genotypes. Hepatol Res 2007; 37: S9-S19.
3. Norder H, Courouce AM, Coursaget P, Echevarria JM, Lee SD, Mushahwar IK, et al. Genetic diversity of hepatitis B virus strains derived worldwide: genotypes, subgenotypes, and HBsAg subtypes. Intervirology 2004; 47: 289-309.
4. Norder H, Hammas B, Lofdahl S, Courouce AM, Magnius LO. Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol 1992; 73(Pt 5): 1201-1208.
5. Simmonds P. Reconstructing the origins of human hepatitis viruses. Philos Trans R Soc Lond B Biol Sci 2001; 356: 1013-1026.
6. MacDonald DM, Holmes EC, Lewis JC, Simmonds P. Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): phylogenetic relationships with human and other primate genotypes. J Virol 2000; 74: 4253-4257.
7. Magnius LO, Norder H. Subtypes, genotypes and molecular epidemiology of the hepatitis B virus as reflected by sequence variability of the S-gene. Intervirology 1995; 38: 24-34.
8. Norder H, Courouce AM, Magnius LO. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 1994; 198: 489-503.
9. Soares P, Alshamali F, Pereira JB, Fernandes V, Silva NM, Afonso C, et al. The Expansion of mtDNA Haplogroup L3 within and out of Africa. Mol Biol Evol 2012; 29: 915-927.
10. Forster P. Ice Ages and the mitochondrial DNA chronology of human dispersals: a review. Philos Trans R Soc Lond B Biol Sci 2004: 255-264; discussion 264.
11. Endicott P, Ho SY, Metspalu M, Stringer C. Evaluating the mitochondrial timescale of human evolution. Trends Ecol Evol 2009; 24: 515-521.
12. Thedja MD, Muljono DH, Nurainy N, Sukowati CH, Verhoef J, Marzuki S. Ethnogeographical structure of hepatitis B virus genotype distribution in Indonesia and discovery of a new subgenotype, B9. Arch Virol 2011; 156: 855-868.
13. Devesa M, Pujol FH. Hepatitis B virus genetic diversity in Latin America. Virus Res 2007; 127: 177-184.
14. Sakamoto T, Tanaka Y, Simonetti J, Osiowy C, Borresen ML, Koch A, et al. Classification of hepatitis B virus genotype B into 2 major types based on characterization of a novel subgenotype in Arctic indigenous populations. J Infect Dis 2007; 196: 1487-1492.
15. Jazayeri MS, Basuni AA, Cooksley G, Locarnini S, Carman WF. Hepatitis B virus genotypes, core gene variability and ethnicity in the Pacific region. J Hepatol 2004; 41: 139-146.
16. Sugauchi F, Mizokami M, Orito E, Ohno T, Kato H, Suzuki S, et al. A novel variant genotype C of hepatitis B virus identified in isolates from Australian Aborigines: complete genome sequence and phylogenetic relatedness. J Gen Virol 2001; 82: 883-892.
17. Goebel T, Waters MR, O'Rourke DH. The late Pleistocene dispersal of modern humans in the Americas. Science 2008; 319: 1497-1502.
18. Ho SY, Endicott P. The crucial role of calibration in molecular date estimates for the peopling of the Americas. Am J Hum Genet 2008; 83: 142-146; author reply 146-147.
19. Kayser M, Brauer S, Cordaux R, Casto A, Lao O, Zhivotovsky LA, et al. Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific. Mol Biol Evol 2006; 23: 2234-2244.
20. Devesa M, Rodriguez C, Leon G, Liprandi F, Pujol FH. Clade analysis and surface antigen polymorphism of hepatitis B virus American genotypes. J Med Virol 2004; 72: 377-384.
21. Arauz-Ruiz P, Norder H, Robertson BH, Magnius LO. Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 2002; 83: 2059-2073.
22. Sanchez LV, Maldonado M, Bastidas-Ramirez BE, Norder H, Panduro A. Genotypes and S-gene variability of Mexican hepatitis B virus strains. J Med Virol 2002; 68: 24-32.
23. Lusida MI, Nugrahaputra VE, Soetjipto Handajani R, Nagano-Fujii M, Sasayama M, et al. Novel subgenotypes of hepatitis B virus genotypes C and D in Papua, Indonesia. J Clin Microbiol 2008; 46: 2160-2166.
24. Osiowy C, Larke B, Giles E. Distinct geographical and demographic distribution of hepatitis B virus genotypes in the Canadian Arctic as revealed through an extensive molecular epidemiological survey. J Viral Hepat 2011; 18: e11-19.
25. Utama A, Octavia TI, Dhenni R, Miskad UA, Yusuf I, Tai S. Hepatitis B virus genotypes/subgenotypes in voluntary blood donors in Makassar, South Sulawesi, Indonesia. Virol J 2009; 6: 128.
26. Utama A, Purwantomo S, Siburian MD, Dhenni R, Gani RA, Hasan I, et al. Hepatitis B virus subgenotypes and basal core promoter mutations in Indonesia. World J Gastroenterol 2009; 15: 4028-4036.
27. Kirch PV. On the Road of the Winds: An Archaeological History of the Pacific Islands Before European Contact, University of California Press, Berkeley, Los Angeles, London. 2000.
28. Bar-Gal GK, Kim MJ, Klein A, Shin DH, Oh CS, Kim JW, et al. Tracing hepatitis B virus to the 16(th) century in a Korean mummy. HEPATOLOGY 2012.
29. Durand JD. A long-range view of world population growth. Ann Am Acad Political Soc Sci 1967; 369: 1-8.
30. Newey W, West K, Kenneth D. A simple, positive semi-definite, heteroskedasticity and autocorrelation consistent covariance matrix. Econometrica 1987; 55: 703-708.
31. Underhill PA, Kivisild T. Use of y chromosome and mitochondrial DNA population structure in tracing human migrations. Annu Rev Genet 2007; 41: 539-564.
32. Meldal BH, Moula NM, Barnes IH, Boukef K, Allain JP. A novel hepatitis B virus subgenotype, D7, in Tunisian blood donors. J Gen Virol 2009; 90: 1622-1628.
33. Mahgoub S, Candotti D, El Ekiaby M, Allain JP. Hepatitis B virus (HBV) infection and recombination between HBV genotypes D and E in asymptomatic blood donors from Khartoum, Sudan. J Clin Microbiol 2011; 49: 298-306.
34. Garmiri P, Rezvan H, Abolghasemi H, Allain JP. Full genome characterization of hepatitis B virus strains from blood donors in Iran. J Med Virol 2011; 83: 948-952.
35. Cox LE, Arslan O, Allain JP. Characterization of hepatitis B virus in Turkish blood donors, and the prevalence of the SP1 splice variant. J Med Virol 2011; 83: 1321-1325.
36. Osiowy C, Larke B, Giles E. Distinct geographical and demographic distribution of hepatitis B virus genotypes in the Canadian Arctic as revealed through an extensive molecular epidemiological survey. J Viral Hepat 2011; 18: e11-19.
37. Kirch PV. Peopling of the Pacific: a holistic anthropological perspective. Annu Rev Anthropol 2010; 39: 131-148.
38. Moodley Y, Linz B, Yamaoka Y, Windsor HM, Breurec S, Wu JY, et al. The peopling of the Pacific from a bacterial perspective. Science 2009; 323: 527-530.
39. Wollstein A, Lao O, Becker C, Brauer S, Trent RJ, Nurnberg P, et al. Demographic history of Oceania inferred from genome-wide data. Curr Biol 2010; 20: 1983-1992.
40. Klein RG. Darwin and the recent African origin of modern humans. Proc Natl Acad Sci U S A 2009; 106: 16007-16009.
41. Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt HJ, et al. The archaeogenetics of Europe. Curr Biol 2010; 20: R174-183.
42. Fattovich G, Bortolotti F, Donato F. Natural history of chronic hepatitis B: special emphasis on disease progression and prognostic factors. J Hepatol 2008; 48: 335-352.
43. Robinson WS. Genetic variation among hepatitis B and related viruses. Ann N Y Acad Sci 1980; 354: 371-378.
44. Kodama K, Ogasawara N, Yoshikawa H, Murakami S. Nucleotide sequence of a cloned woodchuck hepatitis virus genome: evolutional relationship between hepadnaviruses. J Virol 1985; 56: 978-986.
45. Sa-Nguanmoo P, Rianthavorn P, Amornsawadwattana S, Poovorawan Y. Hepatitis B virus infection in non-human primates. Acta Virol 2009; 53: 73-82.