Novel subgenotypes of hepatitis B virus genotypes C and D in Papua, Indonesia

Journal of Clinical Microbiology

Volumn 46, Issue 7, 2008, Pages 2160-2166

  Lusida, Maria Inge ^a   Nugrahaputra, Victor Eka ^b   Soetjipto, ^a   Handajani, Retno ^a   Nagano Fujii, Motoko ^c   Sasayama, Mikiko ^c   Utsumi, Takako ^c   Hotta, Hak ^c  

^a AIRLANGGA UNIVERSITY   (Indonesia)

^b CENDERAWASIH UNIVERSITY   (Indonesia)

^c KOBE UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; HEPATITIS B SURFACE ANTIGEN; HEPATITIS B CORE ANTIGEN; PRIMER DNA; VIRUS DNA;

ADRQ GENE; ADW2 GENE; ADW4 GENE; ARTICLE; ASIA; AYR GENE; AYW1 GENE; AYW2 GENE; AYW3 GENE; GENE IDENTIFICATION; GENE SEQUENCE; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HEPATITIS B VIRUS; HUMAN; INDONESIA; NEW CALEDONIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYNESIA; PRIORITY JOURNAL; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS ISOLATION; ADOLESCENT; ADULT; AMINO ACID SEQUENCE; BLOOD DONOR; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FEMALE; GENETICS; HEPATITIS B; ISOLATION AND PURIFICATION; MALE; MIDDLE AGED; MOLECULAR GENETICS; SEQUENCE ALIGNMENT; VIROLOGY;

HEPATITIS B VIRUS;

ADOLESCENT; ADULT; AMINO ACID SEQUENCE; BLOOD DONORS; DNA PRIMERS; DNA, VIRAL; FEMALE; GENOTYPE; HEPATITIS B; HEPATITIS B CORE ANTIGENS; HEPATITIS B SURFACE ANTIGENS; HEPATITIS B VIRUS; HUMANS; INDONESIA; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 49049112904     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01681-07     Document Type: Article

References (34)

1. Arauz-Ruiz, P., H. Norder, K. A. Visoná, and L. O. Magnius. 1997. Molecular epidemiology of hepatitis B virus in Central America reflected in the genetic variability of the small S gene. J. Infect. Dis. 176:851-858.
2. Arauz-Ruiz, P., H. Norder, B. H. Robertson, and L. O. Magnius. 2002. Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J. Gen. Virol. 83:2059-2073.
3. Banerjee, A., F. Kurbanov, D. Sibnarayan, P. K. Chandra, Y. Tanaka, M. Mizokami, and R. Chakravarty. 2006. Phylogenetic relatedness and genetic diversity of hepatitis B virus isolates in Eastern India. J. Med. Virol. 78: 1164-1174.
4. Blitz, L., F. H. Pujol, P. D. Swenson, L. Porto, R. Atencio, M. Araujo, L. Costa, D. C. Monsalve, J. R. Torres, H. A. Fields, S. Lambert, C. Van Geyt, H. Norder, L. O. Magnius, J. M. Echevarría, and L. Stuyver. 1998. Antigenic diversity of hepatitis B virus strains of genotype F in Amerindians and other population groups from Venezuela. J. Clin. Microbiol. 36:648-651.
5. Bozdayi, G., A. R. Türkyilmaz, R. Idilman, E. Karatayli, S. Rota, C. Yurdaydin, and A. M. Bozdayi. 2005. Complete genome sequence and phylogenetic analysis of hepatitis B virus isolated from Turkish patients with chronic HBV infection. J. Med. Virol. 76:476-481.
6. Chan, H. L. Y., M. L. Wong, A. Y. Hui, L. C. T. Hung, F. K. L. Chan, and J. J. Y. Sung. 2003. Hepatitis B virus genotype C takes a more aggressive disease course than hepatitis B virus genotype B in hepatitis B e antigen-positive patients. J. Clin. Microbiol. 41:1277-1279.
7. Chan, H. L. Y., S. K. W. Tsui, C. H. Tse, E. Y. T. Ng, T. C. C. Au, L. Yuen, A. Bartholomeusz, K. S. Leung, K. H. Lee, S. Locarnini, and J. J. Y. Sung. 2005. Epidemiological and virological characteristics of 2 subgroups of hepatitis B virus genotype C. J. Infect. Dis. 191:2022-2033.
8. Handajani, R., Soetjipto, M. I. Lusida, P. Suryohudoyo, P. Adi, P. B. Setiawan, C. A. Nidom, R. Soemarto, Y. Katayama, M. Fujii, and H. Hotta. 2000. Prevalence of GB virus C/hepatitis G virus infection among various populations in Surabaya, Indonesia, and identification of novel groups of sequence variants. J. Clin. Microbiol. 38:662-668.
9. Huy, T. T.-T., H. Ushijima, V. X. Quang, K. M. Win, P. Luengrojanakul, K. Kikuchi, T. Sata, and K. Abe. 2004. Genotype C of hepatitis B virus can be classified into at least two subgroups. J. Gen. Virol. 85:283-292.
10. Kao, J. H., P. J. Chen, M. Y. Lai, and D. S. Chen. 2000. Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B. Gastroenterology 118:554-559.
11. Kao, J.-H. 2002. Hepatitis B viral genotypes: clinical relevance and molecular characteristics. J. Gastroenterol. Hepatol. 17:643-650.
12. Khan, M., J. J. Dong, S. K. Acharya, Y. Dhagwahdorj, Z. Abbas, W. Jafri, D. H. Mulyono, N. Tozun, and S. K. Sarin. 2004. Hepatology issues in Asia: perspective from regional leaders. J. Gastroenterol. Hepatol. 19:S419-S430.
13. Kidd-Ljunggren, K., Y. Miyakawa, and A. H. Kidd. 2002. Genetic variability in hepatitis B viruses. J. Gen. Virol. 83:1267-1280.
14. Kramvis, A., M. Kew, and G. François. 2005. Hepatitis B virus genotypes. Vaccine 23:2409-2423.
15. Kurbanov, F., Y. Tanaka, K. Fujiwara, F. Sugauchi, D. Mbanya, L. Zekeng, N. Ndembi, C. Ngansop, L. Kaptue, T. Miura, E. Ido, M. Hayami, H. Ichimura, and M. Mizokami. 2005. A new subtype (subgenotype) Ac (A3) of hepatitis B virus and recombination between genotypes A and E in Cameroon. J. Gen. Virol. 86:2047-2056.
16. Lusida, M. I., M. Nagano-Fujii, C. A. Nidom, Soetjipto, R. Handajani, T. Fujita, K. Oka, and H. Hotta. 2001. Correlation between mutations in the interferon sensitivity-determining region of NS5A protein and viral load of hepatitis C virus subtypes 1b, 1c, and 2a. J. Clin. Microbiol. 39:3858-3864.
17. Lusida, M. I., Surayah, H. Sakugawa, M. Nagano-Fujii, Soetjipto, Mulyanto, R. Handajani, Boediwarsono, P. B. Setiawan, C. A. Nidom, S. Ohgimoto, and H. Hotta. 2003. Genotype and subtype analyses of hepatitis B virus (HBV) and possible co-infection of HBV and hepatitis C virus (HCV) or hepatitis D virus (HDV) in blood donors, patients with chronic liver disease and patients on hemodialysis in Surabaya, Indonesia. Microbiol. Immunol. 47: 969-975.
18. Magnius, L. O., and H. Norder. 1995. Subtypes, genotypes and molecular epidemiology of the hepatitis B virus as reflected by sequence variability of the S-gene. Intervirology 38:24-34.
19. Mulyanto, F. Tsuda, A. T. Karossi, S. Soewignjo, Roestamsjah, D. Sumarsidi, R. H. Trisnamurti, Sumardi, Surayah, L. Z. Udin, Melani-Wikanta, K. Kanai, and S. Mishiro. 1997. Distribution of the hepatitis B surface antigen subtypes in Indonesia: implications for ethnic heterogeneity and infection control measures. Arch. Virol. 142:2121-2129.
20. Nagasaki, F., H. Niitsuma, J. G. Cervantes, M. Chiba, S. Hong, T. Ojima, Y. Ueno, E. Bondoc, K. Kobayashi, M. Ishii, and T. Shimosegawa. 2006. Analysis of the entire nucleotide sequence of hepatitis B virus genotype B in the Philippines reveals a new subgenotype of genotype B. J. Gen. Virol. 87:1175-1180.
21. Norder, H., A.-M. Couroucé, and L. O. Magnius. 1994. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198:489-503.
22. Norder, H., A.-M. Couroucé, P. Coursaget, J. M. Echevarria, S.-D. Lee, I. K. Mushahwar, B. H. Robertson, S. Locarnini, and L. O. Magnius. 2004. Genetic diversity of hepatitis B virus strains derived worldwide: genotypes, subgenotypes, and HBsAg subtypes. Intervirology 47:289-309.
23. Okamoto, H., F. Tsuda, H. Sakugawa, R. I. Sastrosoewignjo, M. Imai, Y. Miyakawa, and M. Mayumi. 1988. Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J. Gen. Virol. 69:2575-2583.
24. Orito, E., M. Mizokami, H. Sakugawa, K. Michitaka, K. Ishikawa, T. Ichida, T. Okanoue, H. Yotsuyanagi, and S. Iino for the Japan HBV Genotype Research Group. 2001. A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Hepatology 33:218-223.
25. Orito, E., T. Ichida, H. Sakugawa, M. Sata, N. Horiike, K. Hino, K. Okita, T. Okanoue, S. Iino, E. Tanaka, K. Suzuki, H. Watanabe, S. Hige, and M. Mizokami. 2001. Geographic distribution of hepatitis B virus (HBV) genotype in patients with chronic HBV infection in Japan. Hepatology 34:590-594.
26. Sakamoto, T., Y. Tanaka, E. Orito, J. Co, J. Clavio, F. Sugauchi, K. Ito, A. Ozasa, A. Quino, R. Ueda, J. Sollano, and M. Mizokami. 2006. Novel subtypes (subgenotypes) of hepatitis B virus genotypes B and C among chronic liver disease patients in the Philippines. J. Gen. Virol. 87:1873-1882.
27. Sastrosoewignjo, R. I., B. Sandjaja, and H. Okamoto. 1991. Molecular epidemiology of hepatitis B virus in Indonesia. J. Gastroenterol. Hepatol. 6:491-498.
28. Schaefer, S. 2007. Hepatitis B virus taxonomy and hepatitis B virus genotypes. World J. Gastroenterol. 13:14-21.
29. Stuyver, L., S. De Gendt, C. Van Geyt, F. Zoulim, M. Fried, R. F. Schinazi, and R. Rossau. 2000. A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness. J. Gen. Virol. 81:67-74.
30. Sugauchi, F., M. Mizokami, E. Orito, T. Ohno, H. Kato, S. Suzuki, Y. Kimura, R. Ueda, L. A. Butterworth, and W. G. E. Cooksley. 2001. A novel variant genotype C of hepatitis B virus identified in isolates from Australian aborigines: complete genome sequence and phylogenetic relatedness. J. Gen. Virol. 82:883-892.
31. Sugauchi, F., E. Orito, T. Ichida, H. Kato, H. Sakugawa, S. Kakumu, T. Ishida, A. Chutaputti, C.-L. Lai, R. Ueda, Y. Miyakawa, and M. Mizokami. 2002. Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J. Virol. 76:5985-5992.
32. Takahashi, K., B. Brotman, S. Usuda, S. Mishiro, and A. M. Prince. 2000. Full-genome sequence analyses of hepatitis B virus (HBV) strains recovered from chimpanzees infected in the wild: implications for an origin of HBV. Virology 267:58-64.
33. Telenta, P. F. S., G. P. Poggio, J. L. Lopez, J. Gonzalez, A. Lemberg, and R. H. Campos. 1997. Increased prevalence of genotype F hepatitis B virus isolates in Buenos Aires, Argentina. J. Clin. Microbiol. 35:1873-1875.
34. Yuasa, R., K. Takahashi, B. V. Dien, N. H. Binh, T. Morishita, K. Sato, N. Yamamoto, S. Isomura, K. Yoshioka, T. Ishikawa, S. Mishiro, and S. Kakumu. 2000. Properties of hepatitis B virus genome recovered from Vietnamese patients with fulminant hepatitis in comparison with those of acute hepatitis. J. Med. Virol. 61:23-28.