메뉴 건너뛰기




Volumn 97, Issue 4, 2013, Pages 1661-1668

Response of a diuron-degrading community to diuron exposure assessed by real-time quantitative PCR monitoring of phenylurea hydrolase A and B encoding genes

Author keywords

Biodegradation; Microbial communities; Mineralization; Pesticides; Phenylurea hydrolases; qPCR

Indexed keywords

COPY NUMBER; DEGRADATION PATHWAYS; DNA EXTRACTS; DNA SAMPLES; ENCODING GENES; GENETIC POTENTIAL; HYDROLASE GENE; MICROBIAL COMMUNITIES; MINERALIZATION; MINERALIZATION POTENTIAL; PHENYLUREAS; QPCR; REAL-TIME QUANTITATIVE PCR; SEDIMENT SAMPLES; SOIL AND SEDIMENT; SOIL COMMUNITY;

EID: 84874385298     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-012-4318-3     Document Type: Article
Times cited : (18)

References (35)
  • 1
    • 33144468213 scopus 로고    scopus 로고
    • Degradation of 4-chloro-2-methylphenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene
    • 10.1128/AEM.72.2.1476-1486.2006
    • Bælum J, Henriksen T, Hansen HCB, Jacobsen CS (2006) Degradation of 4-chloro-2-methylphenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene. Appl Environ Microbiol 72:1476-1486
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1476-1486
    • Bælum, J.1    Henriksen, T.2    Hansen, H.C.B.3    Jacobsen, C.S.4
  • 2
    • 84861163933 scopus 로고    scopus 로고
    • Dynamics of the linuron hydrolase libA gene pool size in response to linuron application and environmental perturbations in agricultural soil and on-farm biopurification systems
    • 10.1128/AEM.06991-11 1:CAS:528:DC%2BC38XlsVSltr4%3D
    • Bers K, Sniegowski K, De Mot R, Springael D (2012) Dynamics of the linuron hydrolase libA gene pool size in response to linuron application and environmental perturbations in agricultural soil and on-farm biopurification systems. Appl Environ Microbiol 78:2783-2789
    • (2012) Appl Environ Microbiol , vol.78 , pp. 2783-2789
    • Bers, K.1    Sniegowski, K.2    De Mot, R.3    Springael, D.4
  • 3
    • 77950627536 scopus 로고    scopus 로고
    • Current approaches for the assessment of in situ biodegradation
    • 10.1007/s00253-010-2461-2 1:CAS:528:DC%2BC3cXjtlalur0%3D
    • Bombach P, Richnow HH, Kästner M, Fischer A (2010) Current approaches for the assessment of in situ biodegradation. Appl Microbiol Biotechnol 86:839-852
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 839-852
    • Bombach, P.1    Richnow, H.H.2    Kästner, M.3    Fischer, A.4
  • 4
    • 19944424860 scopus 로고    scopus 로고
    • Isolation of diuron-degrading bacteria from treated soil
    • 10.1590/S1516-89132004000600020
    • Dellamatrice PM, Monteiro RTR (2004) Isolation of diuron-degrading bacteria from treated soil. Braz Arch Biol Technol 47:999-1003
    • (2004) Braz Arch Biol Technol , vol.47 , pp. 999-1003
    • Dellamatrice, P.M.1    Monteiro, R.T.R.2
  • 5
    • 0347990402 scopus 로고    scopus 로고
    • Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil
    • 10.1016/j.mimet.2003.08.015 1:CAS:528:DC%2BD2cXoslWn
    • Devers M, Soulas G, Martin-Laurent F (2004) Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil. J Microbiol Methods 56:3-15
    • (2004) J Microbiol Methods , vol.56 , pp. 3-15
    • Devers, M.1    Soulas, G.2    Martin-Laurent, F.3
  • 6
    • 44649148304 scopus 로고    scopus 로고
    • Aerobic bioremediation of chlorobenzene source-zone soil in flow-through columns: Performance assessment using quantitative PCR
    • 10.1007/s10532-007-9160-4 1:CAS:528:DC%2BD1cXmsFKlt7Y%3D
    • Dominguez RF, da Silva MLB, McGuire TM, Adamson D, Newell CJ, Alvarez PJJ (2008) Aerobic bioremediation of chlorobenzene source-zone soil in flow-through columns: performance assessment using quantitative PCR. Biodegradation 19:545-553
    • (2008) Biodegradation , vol.19 , pp. 545-553
    • Dominguez, R.F.1    Da Silva, M.L.B.2    McGuire, T.M.3    Adamson, D.4    Newell, C.J.5    Alvarez, P.J.J.6
  • 7
    • 22544440009 scopus 로고    scopus 로고
    • Enhanced isoproturon mineralisation in a clay silt loam agricultural soil. Enhanced isoproturon mineralisation in a clay silt loam agricultural soil
    • 10.1051/agro:2005003 1:CAS:528:DC%2BD2MXhtVemsrvP
    • El-Sebai T, Lagacherie B, Cooper JF, Soulas G, Martin-Laurent F (2005) Enhanced isoproturon mineralisation in a clay silt loam agricultural soil. Enhanced isoproturon mineralisation in a clay silt loam agricultural soil. Agron Sustain Dev 25:271-277
    • (2005) Agron Sustain Dev , vol.25 , pp. 271-277
    • El-Sebai, T.1    Lagacherie, B.2    Cooper, J.F.3    Soulas, G.4    Martin-Laurent, F.5
  • 8
    • 77955993458 scopus 로고    scopus 로고
    • Diuron mineralisation in a Mediterranean vineyard soil: Impact of moisture content and temperature
    • 10.1002/ps.1971
    • El Sebaï T, Devers M, Lagacherie B, Rouard N, Soulas G, Martin-Laurent F (2010) Diuron mineralisation in a Mediterranean vineyard soil: impact of moisture content and temperature. Pest Manag Sci 66:988-995
    • (2010) Pest Manag Sci , vol.66 , pp. 988-995
    • El Sebaï, T.1    Devers, M.2    Lagacherie, B.3    Rouard, N.4    Soulas, G.5    Martin-Laurent, F.6
  • 9
    • 33747335398 scopus 로고    scopus 로고
    • Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils
    • 10.1128/AEM.00231-06 1:CAS:528:DC%2BD28XosVKmu7g%3D
    • Henry S, Bru D, Stres B, Hallet S, Philippot L (2006) Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils. Appl Environ Microbiol 72:5181-5189
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5181-5189
    • Henry, S.1    Bru, D.2    Stres, B.3    Hallet, S.4    Philippot, L.5
  • 12
    • 77955277119 scopus 로고    scopus 로고
    • Assessing the correlation between anaerobic toluene degradation activity and bssA concentrations in hydrocarbon-contaminated aquifer material
    • 10.1007/s10532-010-9344-1 1:CAS:528:DC%2BC3cXpslCmsrw%3D
    • Kazy SK, Monier AL, Alvarez PJJ (2010) Assessing the correlation between anaerobic toluene degradation activity and bssA concentrations in hydrocarbon-contaminated aquifer material. Biodegradation 21:793-800
    • (2010) Biodegradation , vol.21 , pp. 793-800
    • Kazy, S.K.1    Monier, A.L.2    Alvarez, P.J.J.3
  • 18
    • 77957256516 scopus 로고    scopus 로고
    • The periphyton as a multimetric bioindicator for assessing the impact of land use on rivers: An overview of the Ardières-Morcille experimental watershed (France)
    • 10.1007/s10750-010-0105-2 1:CAS:528:DC%2BC3cXht1WmtbrF
    • Montuelle B, Dorigo U, Bérard A, Volat B, Bouchez A, Tlili A, Gouy V, Pesce S (2010) The periphyton as a multimetric bioindicator for assessing the impact of land use on rivers: an overview of the Ardières-Morcille experimental watershed (France). Hydrobiologia 657:123-141
    • (2010) Hydrobiologia , vol.657 , pp. 123-141
    • Montuelle, B.1    Dorigo, U.2    Bérard, A.3    Volat, B.4    Bouchez, A.5    Tlili, A.6    Gouy, V.7    Pesce, S.8
  • 19
    • 67649933880 scopus 로고    scopus 로고
    • Potential for microbial diuron mineralisation in a small wine-growing watershed: From treated plots to lotic receiver hydrosystem
    • 10.1002/ps.1729 1:CAS:528:DC%2BD1MXmvVaisrs%3D
    • Pesce S, Martin-Laurent F, Rouard N, Montuelle B (2009) Potential for microbial diuron mineralisation in a small wine-growing watershed: from treated plots to lotic receiver hydrosystem. Pest Manag Sci 65:651-657
    • (2009) Pest Manag Sci , vol.65 , pp. 651-657
    • Pesce, S.1    Martin-Laurent, F.2    Rouard, N.3    Montuelle, B.4
  • 20
    • 77149164114 scopus 로고    scopus 로고
    • In situ relationships between spatio-temporal variations in diuron concentrations and phototrophic biofilm tolerance in a contaminated river
    • 10.1016/j.watres.2009.11.053 1:CAS:528:DC%2BC3cXisFShtbo%3D
    • Pesce S, Margoum C, Montuelle B (2010a) In situ relationships between spatio-temporal variations in diuron concentrations and phototrophic biofilm tolerance in a contaminated river. Water Res 44:1941-1949
    • (2010) Water Res , vol.44 , pp. 1941-1949
    • Pesce, S.1    Margoum, C.2    Montuelle, B.3
  • 21
    • 79960021777 scopus 로고    scopus 로고
    • Evidence for adaptation of riverine sediment microbial communities to diuron mineralisation: Incidence of run-off and soil erosion
    • 10.1007/s11368-010-0202-x 1:CAS:528:DC%2BC3cXntlKksrg%3D
    • Pesce S, Martin-Laurent F, Rouard N, Robin A, Montuelle B (2010b) Evidence for adaptation of riverine sediment microbial communities to diuron mineralisation: incidence of run-off and soil erosion. J Soil Sediments 10:698-707
    • (2010) J Soil Sediments , vol.10 , pp. 698-707
    • Pesce, S.1    Martin-Laurent, F.2    Rouard, N.3    Robin, A.4    Montuelle, B.5
  • 22
    • 77957755052 scopus 로고    scopus 로고
    • Evaluation of single and joint toxic effects of diuron and its main metabolites on natural phototrophic biofilms using a pollution-induced community tolerance (PICT) approach
    • 10.1016/j.aquatox.2010.06.006 1:CAS:528:DC%2BC3cXhtVKitrjP
    • Pesce S, Lissalde S, Lavieille D, Margoum C, Mazzella N, Roubeix V, Montuelle B (2010c) Evaluation of single and joint toxic effects of diuron and its main metabolites on natural phototrophic biofilms using a pollution-induced community tolerance (PICT) approach. Aquatic Toxicol 99:492-499
    • (2010) Aquatic Toxicol , vol.99 , pp. 492-499
    • Pesce, S.1    Lissalde, S.2    Lavieille, D.3    Margoum, C.4    Mazzella, N.5    Roubeix, V.6    Montuelle, B.7
  • 23
    • 52549094287 scopus 로고    scopus 로고
    • Evaluating the biodegradation of aromatic hydrocarbons by monitoring of several functional genes
    • 10.1007/s10532-008-9190-6 1:CAS:528:DC%2BD1cXhtFGhsL%2FM
    • Piskonen R, Nyyssönen M, Itävaara M (2008) Evaluating the biodegradation of aromatic hydrocarbons by monitoring of several functional genes. Biodegradation 19:883-895
    • (2008) Biodegradation , vol.19 , pp. 883-895
    • Piskonen, R.1    Nyyssönen, M.2    Itävaara, M.3
  • 24
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S, Misener S (eds) Humana Press, Totowa, NJ
    • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp. 365-386 (Source code available at http://fokker.wi.mit.edu/primer3/)
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 25
    • 84874355746 scopus 로고    scopus 로고
    • Diversity and evolution of micro-organisms and pathways for the degradation of environmental contaminants: A case study with the s-triazine herbicides
    • L.C. Batty K.B. Hallberg (eds) Cambridge University Press Cambridge 10.1017/CBO9780511805561.011
    • Sadowsky MJ (2010) Diversity and evolution of micro-organisms and pathways for the degradation of environmental contaminants: a case study with the s-triazine herbicides. In: Batty LC, Hallberg KB (eds) Ecology of industrial pollution. Cambridge University Press, Cambridge, pp 205-225
    • (2010) Ecology of Industrial Pollution , pp. 205-225
    • Sadowsky, M.J.1
  • 26
    • 41849084834 scopus 로고    scopus 로고
    • Aquatic risk assessment of herbicides in freshwater ecosystems of South Florida
    • 10.1007/s00244-007-9085-2 1:CAS:528:DC%2BD1cXkt12gur0%3D
    • Schuler LJ, Rand GM (2008) Aquatic risk assessment of herbicides in freshwater ecosystems of South Florida. Arch Environ Contam Toxicol 54:571-583
    • (2008) Arch Environ Contam Toxicol , vol.54 , pp. 571-583
    • Schuler, L.J.1    Rand, G.M.2
  • 28
    • 78650818797 scopus 로고    scopus 로고
    • Biotransformation and biomonitoring of phenylurea herbicide diuron
    • 10.1016/j.biortech.2010.10.076 1:CAS:528:DC%2BC3MXks1CjsA%3D%3D
    • Sharma P, Suri CR (2011) Biotransformation and biomonitoring of phenylurea herbicide diuron. Bioresour Technol 102:3119-3125
    • (2011) Bioresour Technol , vol.102 , pp. 3119-3125
    • Sharma, P.1    Suri, C.R.2
  • 29
    • 57449118500 scopus 로고    scopus 로고
    • Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
    • 10.1111/j.1574-6941.2008.00629.x
    • Smith CJ, Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67:6-20
    • (2008) FEMS Microbiol Ecol , vol.67 , pp. 6-20
    • Smith, C.J.1    Osborn, A.M.2
  • 30
    • 0038204162 scopus 로고    scopus 로고
    • Microbial degradation of isoproturon and related phenylurea herbicides in and below agricultural fields
    • 10.1016/S0168-6496(03)00127-2
    • Sørensen SR, Bending GD, Jacobsen CS, Walker A, Aamand J (2003) Microbial degradation of isoproturon and related phenylurea herbicides in and below agricultural fields. FEMS Microbiol Ecol 45:1-11
    • (2003) FEMS Microbiol Ecol , vol.45 , pp. 1-11
    • Sørensen, S.R.1    Bending, G.D.2    Jacobsen, C.S.3    Walker, A.4    Aamand, J.5
  • 31
    • 0027803611 scopus 로고
    • Evidence for the existence of different physiological groups in the microbial community responsible for 2, 4-D mineralization in soil
    • 10.1016/0038-0717(93)90069-N 1:CAS:528:DyaK3sXktVaqtLc%3D
    • Soulas G (1993) Evidence for the existence of different physiological groups in the microbial community responsible for 2, 4-D mineralization in soil. Soil Biol Biochem 25:443-449
    • (1993) Soil Biol Biochem , vol.25 , pp. 443-449
    • Soulas, G.1
  • 32
    • 49949093771 scopus 로고    scopus 로고
    • The environmental fate of diuron under a conventional production regime in a sugarcane farm during the plant cane phase
    • 10.1002/ps.1593 1:CAS:528:DC%2BD1cXhtVehs7fM
    • Stork PR, Bennett FR, Bell M (2008) The environmental fate of diuron under a conventional production regime in a sugarcane farm during the plant cane phase. Pest Manag Sci 64:954-963
    • (2008) Pest Manag Sci , vol.64 , pp. 954-963
    • Stork, P.R.1    Bennett, F.R.2    Bell, M.3
  • 33
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 34
    • 0035349911 scopus 로고    scopus 로고
    • Degradation of substituted phenylurea herbicides by Arthrobacter globiformis strain D47 and characterization of a plasmid-associated hydrolase gene, puhA
    • 10.1128/AEM.67.5.2270-2275.2001 1:CAS:528:DC%2BD3MXjtlGms7s%3D
    • Turnbull GA, Ousley M, Walker A, Shaw E, Morgan JAW (2001) Degradation of substituted phenylurea herbicides by Arthrobacter globiformis strain D47 and characterization of a plasmid-associated hydrolase gene, puhA. Appl Environ Microbiol 67:2270-2275
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2270-2275
    • Turnbull, G.A.1    Ousley, M.2    Walker, A.3    Shaw, E.4    Morgan, J.A.W.5
  • 35
    • 33750970282 scopus 로고    scopus 로고
    • 2,4-D impact on bacterial communities, and the activity and genetic potential of 2,4-D degrading communities in soil
    • 10.1111/j.1574-6941.2006.00159.x
    • Vieublé-Gonod L, Martin-Laurent F, Chenu C (2006) 2,4-D impact on bacterial communities, and the activity and genetic potential of 2,4-D degrading communities in soil. FEMS Microbiol Ecol 58:529-537
    • (2006) FEMS Microbiol Ecol , vol.58 , pp. 529-537
    • Vieublé-Gonod, L.1    Martin-Laurent, F.2    Chenu, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.