-
1
-
-
60849102167
-
From cellulosomes to cellulosomics
-
Bayer EA, Lamed R, White BA, Flint HJ, (2008) From cellulosomes to cellulosomics. Chem Rec 8: 364-377.
-
(2008)
Chem Rec
, vol.8
, pp. 364-377
-
-
Bayer, E.A.1
Lamed, R.2
White, B.A.3
Flint, H.J.4
-
2
-
-
0242592308
-
Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche
-
Nelson KE, Zinder SH, Hance I, Burr P, Odongo D, et al. (2003) Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche. Environ Microbiol 5: 1212-1220.
-
(2003)
Environ Microbiol
, vol.5
, pp. 1212-1220
-
-
Nelson, K.E.1
Zinder, S.H.2
Hance, I.3
Burr, P.4
Odongo, D.5
-
3
-
-
0032771478
-
Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum
-
Julliand V, de Vaux A, Millet L, Fonty G, (1999) Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum. Appl Environ Microbiol 65: 3738-3741.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3738-3741
-
-
Julliand, V.1
de Vaux, A.2
Millet, L.3
Fonty, G.4
-
4
-
-
0032805304
-
16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep
-
Krause DO, Dalrymple BP, Smith WJ, Mackie RI, McSweeney CS, (1999) 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep. Microbiology 145 (Pt 7): 1797-1807.
-
(1999)
Microbiology
, vol.145
, Issue.Pt 7
, pp. 1797-1807
-
-
Krause, D.O.1
Dalrymple, B.P.2
Smith, W.J.3
Mackie, R.I.4
McSweeney, C.S.5
-
5
-
-
0024021734
-
Enumeration and isolation of cellulolytic and hemicellulolytic bacteria from human feces
-
Wedekind KJ, Mansfield HR, Montgomery L, (1988) Enumeration and isolation of cellulolytic and hemicellulolytic bacteria from human feces. Appl Environ Microbiol 54: 1530-1535.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1530-1535
-
-
Wedekind, K.J.1
Mansfield, H.R.2
Montgomery, L.3
-
6
-
-
0031445098
-
The rumen microbial ecosystem-some recent developments
-
Flint HJ, (1997) The rumen microbial ecosystem-some recent developments. Trends Microbiol 5: 483-488.
-
(1997)
Trends Microbiol
, vol.5
, pp. 483-488
-
-
Flint, H.J.1
-
7
-
-
69949130305
-
Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1
-
Berg Miller ME, Antonopoulos DA, Rincon MT, Band M, Bari A, et al. (2009) Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1. PLoS One 4: e6650.
-
(2009)
PLoS One
, vol.4
-
-
Berg Miller, M.E.1
Antonopoulos, D.A.2
Rincon, M.T.3
Band, M.4
Bari, A.5
-
8
-
-
0037310767
-
Novel organization and divergent dockerin specificities in the cellulosome system of Ruminococcus flavefaciens
-
Rincon MT, Ding SY, McCrae SI, Martin JC, Aurilia V, et al. (2003) Novel organization and divergent dockerin specificities in the cellulosome system of Ruminococcus flavefaciens. J Bacteriol 185: 703-713.
-
(2003)
J Bacteriol
, vol.185
, pp. 703-713
-
-
Rincon, M.T.1
Ding, S.Y.2
McCrae, S.I.3
Martin, J.C.4
Aurilia, V.5
-
9
-
-
77957935787
-
Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1
-
Rincon MT, Dassa B, Flint HJ, Travis AJ, Jindou S, et al. (2010) Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. Plos One 5, e12476.
-
(2010)
Plos One
, vol.5
-
-
Rincon, M.T.1
Dassa, B.2
Flint, H.J.3
Travis, A.J.4
Jindou, S.5
-
10
-
-
47349130717
-
Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens
-
Jindou S, Brulc JM, Levy-Assaraf M, Rincon MT, Flint HJ, et al. (2008) Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens. FEMS Microbiol Lett 285: 188-194.
-
(2008)
FEMS Microbiol Lett
, vol.285
, pp. 188-194
-
-
Jindou, S.1
Brulc, J.M.2
Levy-Assaraf, M.3
Rincon, M.T.4
Flint, H.J.5
-
11
-
-
27744600973
-
Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface
-
Rincon MT, Cepeljnik T, Martin JC, Lamed R, Barak Y, et al. (2005) Unconventional mode of attachment of the Ruminococcus flavefaciens cellulosome to the cell surface. J Bacteriol 187: 7569-7578.
-
(2005)
J Bacteriol
, vol.187
, pp. 7569-7578
-
-
Rincon, M.T.1
Cepeljnik, T.2
Martin, J.C.3
Lamed, R.4
Barak, Y.5
-
12
-
-
34347369555
-
A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens
-
Rincon MT, Cepeljnik T, Martin JC, Barak Y, Lamed R, et al. (2007) A novel cell surface-anchored cellulose-binding protein encoded by the sca gene cluster of Ruminococcus flavefaciens. J Bacteriol 189: 4774-4783.
-
(2007)
J Bacteriol
, vol.189
, pp. 4774-4783
-
-
Rincon, M.T.1
Cepeljnik, T.2
Martin, J.C.3
Barak, Y.4
Lamed, R.5
-
13
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
14
-
-
0027439390
-
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
-
Van Duyne GD, Standaert RF, Karplus PA, Schreiber SL, Clardy J, (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J Mol Biol 229: 105-124.
-
(1993)
J Mol Biol
, vol.229
, pp. 105-124
-
-
Van Duyne, G.D.1
Standaert, R.F.2
Karplus, P.A.3
Schreiber, S.L.4
Clardy, J.5
-
15
-
-
0000192748
-
An automated-system for microbatch protein crystallization and screening
-
Chayen NE, Stewart PDS, Maeder DL, Blow DM, (1990) An automated-system for microbatch protein crystallization and screening. J Appl Crystallogr 23: 297-302.
-
(1990)
J Appl Crystallogr
, vol.23
, pp. 297-302
-
-
Chayen, N.E.1
Stewart, P.D.S.2
Maeder, D.L.3
Blow, D.M.4
-
16
-
-
0037391080
-
Seeds to crystals
-
Bergfors T, (2003) Seeds to crystals. J Struct Biol 142: 66-76.
-
(2003)
J Struct Biol
, vol.142
, pp. 66-76
-
-
Bergfors, T.1
-
17
-
-
84983681648
-
A Nitrogen-gas-stream cryostat for general X-ray-diffraction studies
-
Cosier J, Glazer AM, (1986) A Nitrogen-gas-stream cryostat for general X-ray-diffraction studies. J Appl Crystallogr 19: 105-107.
-
(1986)
J Appl Crystallogr
, vol.19
, pp. 105-107
-
-
Cosier, J.1
Glazer, A.M.2
-
18
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W, (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
19
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: combining chain tracing with density modification
-
Sheldrick GM, (2010) Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr D, Biol Crystallogr 66: 479-485.
-
(2010)
Acta Crystallogr D, Biol Crystallogr
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
20
-
-
4644366388
-
HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs
-
Pape T, Schneider TR, (2004) HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs. J Appl Crystallogr 37: 843-844.
-
(2004)
J Appl Crystallogr
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
22
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A, Morris R, Lamzin VS, (1999) Automated protein model building combined with iterative structure refinement. Nat Struct Biol 6: 458-463.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
23
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, et al. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
-
24
-
-
77949535720
-
Features and development of Coot
-
Emsley P, Lohkamp B, Scott WG, Cowtan K, (2010) Features and development of Coot. Acta Crystallogr D, Biol Crystallogr 66: 486-501.
-
(2010)
Acta Crystallogr D, Biol Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
25
-
-
56649103902
-
Searching protein structure databases with DaliLite v.3
-
Holm L, Kaariainen S, Rosenstrom P, Schenkel A, (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics 24: 2780-2781.
-
(2008)
Bioinformatics
, vol.24
, pp. 2780-2781
-
-
Holm, L.1
Kaariainen, S.2
Rosenstrom, P.3
Schenkel, A.4
-
26
-
-
59649104674
-
Structural basis of murein peptide specificity of a γ-D-glutamyl-L-diamino acid endopeptidase
-
Xu QP, Sudek S, McMullan D, Miller MD, Geierstanger B, et al. (2009) Structural basis of murein peptide specificity of a γ-D-glutamyl-L-diamino acid endopeptidase. Structure 17: 303-313.
-
(2009)
Structure
, vol.17
, pp. 303-313
-
-
Xu, Q.P.1
Sudek, S.2
McMullan, D.3
Miller, M.D.4
Geierstanger, B.5
-
27
-
-
18244415313
-
Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes
-
Anantharaman V, Aravind L, (2003) Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes. Genome Biol 4: R11.
-
(2003)
Genome Biol
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
28
-
-
33751113567
-
Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens
-
Jindou S, Borovok I, Rincon MT, Flint HJ, Antonopoulos DA, et al. (2006) Conservation and divergence in cellulosome architecture between two strains of Ruminococcus flavefaciens. J Bacteriol 188: 7971-7976.
-
(2006)
J Bacteriol
, vol.188
, pp. 7971-7976
-
-
Jindou, S.1
Borovok, I.2
Rincon, M.T.3
Flint, H.J.4
Antonopoulos, D.A.5
-
29
-
-
0242355017
-
Protein crystallization for genomics: throughput versus output
-
Chayen NE, (2003) Protein crystallization for genomics: throughput versus output. J Struct Funct Genomics 4: 115-120.
-
(2003)
J Struct Funct Genomics
, vol.4
, pp. 115-120
-
-
Chayen, N.E.1
-
31
-
-
58149344942
-
Binding of a noncovalent inhibitor exploiting the S' region stabilizes the hepatitis C virus NS3 protease conformation in the absence of cofactor
-
Gallo M, Pennestri M, Bottomley MJ, Barbato G, Eliseo T, et al. (2009) Binding of a noncovalent inhibitor exploiting the S' region stabilizes the hepatitis C virus NS3 protease conformation in the absence of cofactor. J Mol Biol385: 1142-1155.
-
(2009)
J Mol Biol
, vol.385
, pp. 1142-1155
-
-
Gallo, M.1
Pennestri, M.2
Bottomley, M.J.3
Barbato, G.4
Eliseo, T.5
-
32
-
-
51849165615
-
Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad
-
Aramini JM, Rossi P, Huang YJ, Zhao L, Jiang M, et al. (2008) Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad. Biochemistry 47: 9715-9717.
-
(2008)
Biochemistry
, vol.47
, pp. 9715-9717
-
-
Aramini, J.M.1
Rossi, P.2
Huang, Y.J.3
Zhao, L.4
Jiang, M.5
-
33
-
-
59449109206
-
Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogen Staphylococcus saprophyticus
-
Rossi P, Aramini JM, Xiao R, Chen CX, Nwosu C, et al. (2009) Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogen Staphylococcus saprophyticus. Proteins 74: 515-519.
-
(2009)
Proteins
, vol.74
, pp. 515-519
-
-
Rossi, P.1
Aramini, J.M.2
Xiao, R.3
Chen, C.X.4
Nwosu, C.5
-
34
-
-
33744476159
-
The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors
-
Kang S, Barak Y, Lamed R, Bayer EA, Morrison M, (2006) The functional repertoire of prokaryote cellulosomes includes the serpin superfamily of serine proteinase inhibitors. Mol Microbiol 60: 1344-1354.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1344-1354
-
-
Kang, S.1
Barak, Y.2
Lamed, R.3
Bayer, E.A.4
Morrison, M.5
-
35
-
-
23644460722
-
Functional subgenomics of Clostridium thermocellum cellulosomal genes: identification of the major catalytic components in the extracellular complex and detection of three new enzymes
-
Zverlov VV, Kellermann J, Schwarz WH, (2005) Functional subgenomics of Clostridium thermocellum cellulosomal genes: identification of the major catalytic components in the extracellular complex and detection of three new enzymes. Proteomics 5: 3646-3653.
-
(2005)
Proteomics
, vol.5
, pp. 3646-3653
-
-
Zverlov, V.V.1
Kellermann, J.2
Schwarz, W.H.3
-
36
-
-
0032954665
-
Bacillus subtilis 168 gene lytF encodes a γ-D-glutamate-meso-diaminopimelate muropeptidase expressed by the alternative vegetative sigma factor, σD
-
Margot P, Pagni M, Karamata D, (1999) Bacillus subtilis 168 gene lytF encodes a γ-D-glutamate-meso-diaminopimelate muropeptidase expressed by the alternative vegetative sigma factor, σD. Microbiology 145: 57-65.
-
(1999)
Microbiology
, vol.145
, pp. 57-65
-
-
Margot, P.1
Pagni, M.2
Karamata, D.3
-
37
-
-
0032964960
-
Peptidoglycan hydrolase LytF plays a role in cell separation with Cw1F during vegetative growth of Bacillus subtilis
-
Ohnishi R, Ishikawa S, Sekiguchi J, (1999) Peptidoglycan hydrolase LytF plays a role in cell separation with Cw1F during vegetative growth of Bacillus subtilis. J Bacteriol 181: 3178-3184.
-
(1999)
J Bacteriol
, vol.181
, pp. 3178-3184
-
-
Ohnishi, R.1
Ishikawa, S.2
Sekiguchi, J.3
-
38
-
-
0037379280
-
Characterization of the Bacillus subtilis ywtD gene, whose product is involved in gamma-polyglutamic acid degradation
-
Suzuki T, Tahara Y, (2003) Characterization of the Bacillus subtilis ywtD gene, whose product is involved in gamma-polyglutamic acid degradation. J Bacteriol 185: 2379-2382.
-
(2003)
J Bacteriol
, vol.185
, pp. 2379-2382
-
-
Suzuki, T.1
Tahara, Y.2
-
39
-
-
6944227521
-
Characterization of a new Bacillus subtilis peptidoglycan hydrolase gene, yvcE (named cwlO), and the enzymatic properties of its encoded protein
-
Yamaguchi H, Furuhata K, Fukushima T, Yamamoto H, Sekiguchi J, (2004) Characterization of a new Bacillus subtilis peptidoglycan hydrolase gene, yvcE (named cwlO), and the enzymatic properties of its encoded protein. J Biosci Bioeng 98: 174-181.
-
(2004)
J Biosci Bioeng
, vol.98
, pp. 174-181
-
-
Yamaguchi, H.1
Furuhata, K.2
Fukushima, T.3
Yamamoto, H.4
Sekiguchi, J.5
-
40
-
-
33645237935
-
Skl, a novel choline-binding N-acetylmuramoyl-L-alanine amidase of Streptococcus mitis SK137 containing a CHAP domain
-
Llull D, Lopez R, Garcia E, (2006) Skl, a novel choline-binding N-acetylmuramoyl-L-alanine amidase of Streptococcus mitis SK137 containing a CHAP domain. Febs Letters 580: 1959-1964.
-
(2006)
Febs Letters
, vol.580
, pp. 1959-1964
-
-
Llull, D.1
Lopez, R.2
Garcia, E.3
-
41
-
-
27944473534
-
Identification and molecular characterization of an N-acetylmuramyl-L-alanine amidase Sle1 involved in cell separation of Staphylococcus aureus
-
Kajimura J, Fujiwara T, Yamada S, Suzawa Y, Nishida T, et al. (2005) Identification and molecular characterization of an N-acetylmuramyl-L-alanine amidase Sle1 involved in cell separation of Staphylococcus aureus. Molecular Microbiology 58: 1087-1101.
-
(2005)
Molecular Microbiology
, vol.58
, pp. 1087-1101
-
-
Kajimura, J.1
Fujiwara, T.2
Yamada, S.3
Suzawa, Y.4
Nishida, T.5
-
42
-
-
0037396292
-
Enzymes with extra talents: moonlighting functions and catalytic promiscuity
-
Copley SD, (2003) Enzymes with extra talents: moonlighting functions and catalytic promiscuity. Curr Opin Chem Biol 7: 265-272.
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 265-272
-
-
Copley, S.D.1
-
43
-
-
70349304122
-
Cohesin diversity revealed by the crystal structure of the anchoring cohesin from Ruminococcus flavefaciens
-
Alber O, Noach I, Rincon MT, Flint HJ, Shimon LJ, et al. (2009) Cohesin diversity revealed by the crystal structure of the anchoring cohesin from Ruminococcus flavefaciens. Proteins 77: 699-709.
-
(2009)
Proteins
, vol.77
, pp. 699-709
-
-
Alber, O.1
Noach, I.2
Rincon, M.T.3
Flint, H.J.4
Shimon, L.J.5
|