Nanoindentation of biomembrane by carbon nanotubes - MD simulation

Computational Materials Science

Volumn 70, Issue , 2013, Pages 13-18

  Raczyński, Przemysław ^a   Górny, Krzysztof ^a   Pabiszczak, Mateusz ^a   Gburski, Zygmunt ^a  

^a UNIVERSITY OF SILESIA   (Poland)

Author keywords

Biomembrane; Carbon nanotube; MD simulation; Nanoindentation; Phospholipid bilayer

Indexed keywords

ARM-CHAIR NANOTUBES; BIOMEMBRANES; FREE ENERGY CHANGE; INDENTATION DEPTH; MD SIMULATION; MEMBRANE PENETRATION; PHOSPHOLIPID BILAYER; PHYSIOLOGICAL TEMPERATURE; PULLING VELOCITY; STEERED MOLECULAR DYNAMICS SIMULATIONS;

CARBON NANOTUBES; MOLECULAR DYNAMICS; NANOTUBES; PHOSPHOLIPIDS; SINGLE-WALLED CARBON NANOTUBES (SWCN);

NANOINDENTATION;

EID: 84873826323     PISSN: 09270256     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.commatsci.2012.12.031     Document Type: Article

References (41)

1. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter Molecular biology of the cell 2007 Garland Science New York
2. D.L. Nelson, and M.M. Cox Lehninger Principles of Biochemistry 2008 W. H. Freeman New York
3. N. Sperelakis Cell Physiology Sourcebook: Essentials of Membrane Biophysics 2012 Academic Press Incorporated
4. A.A. Bhirde, V. Patel, J. Gavard, G. Zhang, A.A. Sousa, A. Masedunskas, R.D. Leapman, R. Weigert, J.S. Gutkind, and J.F. Rusling ACS Nano 3 2009 307 316
5. D. Cai, J.M. Mataraza, Z.H. Qin, Z. Huang, J. Huang, T.C. Chiles, D. Carnahan, K. Kempa, and Z. Ren Nature Methods 2 6 2005 449 454
6. D. Losic, and S. Simovic Expert Opinion on Drug Delivery 6 2009 1363 1381
7. L. Monticelli, E. Salonen, P.C. Ke, and I. Vattulainen Soft Matter 5 22 2009 4433 4445
8. N.W.S. Kam, and H. Dai Physical Status Solidi B 243 2006 3561 3566
9. L. Meng, X. Zhang, Q. Lu, Z. Fei, and P.J. Dyson Biomaterials 33 2012 1689 1698
10. E. Heister, V. Neves, C. Lamprecht, S.R.P. Silva, H.M. Coley, and J. McFadden Carbon 50 2012 622 632
11. A.E. Porter, M. Gass, K. Muller, J.N. Skepper, P.A. Midgley, and M. Welland Nature Nanotechnology 2 2007 713 717
12. A.E. Porter, M. Gass, J.S. Bendall, K. Muller, A. Goode, J.N. Skepper, P.A. Midgley, and M. Welland ACS Nano 3 2009 1485 1492
13. J.C. Debouzy, D. Crouzier, and E. Flahaut Environmental Toxicology Pharmacology 30 2010 147 152
14. V. Raffa, G. Ciofani, S. Nitodas, T. Karachalios, D. D'Allessandro, M. Masinie, and A. Cuschieri Carbon 46 2008 1600 1610
15. J. Gagner, H. Johnson, E. Watkins, Q. Li, M. Terrones, and J. Majewski Langmuir 22 2006 10909 10911
16. I. Obataya, C. Nakamura, S. Han, N. Nakamura, and J. Miyake NanoLetters 5 2005 27 30
17. P. Cherukuri, S.M. Bachilo, S.H. Litovsky, and R.B. Weisman Journal American Chemical Society 126 2004 15638 15639
18. Q. Lu, J.M. Moore, G. Huang, A.S. Mount, A.M. Rao, L.L. Larcom, and P.C. Ke NanoLetters 4 2004 2473 2477
19. E. Wallace, and M. Sansom NanoLetters 8 2008 2751 2756
20. S. Pogodin, and V. Baulin ACS Nano 4 2010 5293 5300
21. V.K. Gangpuomu, and F.M. Capaldi Journal Anomaterials 2011 Article ID 830436
22. T. Róg, M. Pasenkiewicz-Gierula, I. Vattulainen, and M. Karttunen Biochimica Et Biophysica Acta 1778 2009 97 121
23. P. Raczyński, A. Dawid, M. Sokół, and Z. Gburski Biomolecular Engineering 24 2007 572 576
24. P. Raczyński, A. Dawid, and Z. Gburski Journal Molecular Structure 792 2006 212 215
25. J.H. Huang, J.H. Fang, C.C. Liu, and C.W. Chu ACS Nano 5 2011 6262 6271
26. Z. Dendzik, M. Kosmider, P. Raczynski, and A. Piatek Journal Non-Crystalline Solids 353 2007 47 51
27. X.H. Yao, and Y.G. Sun Computational Materials Science 54 2012 135 144
28. J.L. Zhang, C. Wang, and C.W. Zhou ACS Nano 6 2012 7412 7419
29. M. Kosmider, Z. Dendzik, S. Palucha, and Z. Gburski Journal Molecular Structure 704 2004 197 201
30. A. Wisitsoraat, C. Karuwan, K. Wong-ek, D. Phokharatkul, P. Sritongkham, and A. Tuantranont Sensors 9 2009 8658 8668
31. Y. Ren, and G. Pastorin Advanced Materials 20 2008 2031 2036
32. S.K. Vashist, D. Zheng, G. Pastorin, K. Al-Rubeaan, J.H.T. Luong, and F.-S. Sheu Carbon 49 2011 4077 4097
33. G.A. Shen, S. Namilae, and N. Chandra Materials Science Engineering A 429 2006 66 73
34. J.C. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R.D. Skeel, L. Kalé, and K. Schulten Journal Computational Chemistry 26 2005 1781 1802
35. W. Humphrey, A. Dalke, and K. Schulten Journal Molecular Graphics 14 1996 33 38
36. W. Jorgensen, J. Chandrasekhar, J. Madura, R. Impey, and M. Klein Journal Chemical Physics 79 1983 926 935
37. A. Jr, N. Banavali, and N. Foloppe Biopolymers 56 2000 257 265
38. Z. Gburski, K. Górny, and P. Raczyński Solid State Communications 150 2010 415 418
39. A. Alexiadis, and S. Kassinos Chemical Reviews 108 2008 5014 5034
40. C. Jarzynski Physical Review Letters 78 1997 2690 2693
41. C. Jarzynski Physical Review E 56 1997 5018 5035