-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
2
-
-
84860541463
-
A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants
-
Barbez, E., Kubeš, M., Rolcík, J., Béziat, C., Pencík, A., Wang, B., et al. (2012). A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants. Nature 485, 119-122.
-
(2012)
Nature
, vol.485
, pp. 119-122
-
-
Barbez, E.1
Kubeš, M.2
Rolcík, J.3
Béziat, C.4
Pencík, A.5
Wang, B.6
-
3
-
-
0029811396
-
Arabidopsis AUX1 gene: A permease-like regulator of root gravitropism
-
Bennett, M. J., Marchant, A., Green, H. G., May, S. T., Ward, S. P., Millner, P. A., et al. (1996). Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273, 948-950.
-
(1996)
Science
, vol.273
, pp. 948-950
-
-
Bennett, M.J.1
Marchant, A.2
Green, H.G.3
May, S.T.4
Ward, S.P.5
Millner, P.A.6
-
4
-
-
0033579464
-
Sequence-and structure-based prediction of eukaryotic protein phosphorylation sites
-
Blom, N., Gammeltoft, S., and Brunak, S. (1999). Sequence-and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 294, 1351-1362.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1351-1362
-
-
Blom, N.1
Gammeltoft, S.2
Brunak, S.3
-
5
-
-
2942564430
-
Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
-
Blom, N., Sicheritz-Ponten, T., Gupta, R., Gammeltoft, S., and Brunak, S. (2004). Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4, 1633-1649.
-
(2004)
Proteomics
, vol.4
, pp. 1633-1649
-
-
Blom, N.1
Sicheritz-Ponten, T.2
Gupta, R.3
Gammeltoft, S.4
Brunak, S.5
-
6
-
-
84865486118
-
The endoplasmic reticulum localized PIN8 is a pollen specific auxin carrier involved in intracellular auxin homeostasis
-
Bosco, C. D., Dovzhenko, A., Liu, X., Woerner, N., Rensch, T., Eismann, M., et al. (2012). The endoplasmic reticulum localized PIN8 is a pollen specific auxin carrier involved in intracellular auxin homeostasis. Plant J. 71, 860-870.
-
(2012)
Plant J.
, vol.71
, pp. 860-870
-
-
Bosco, C.D.1
Dovzhenko, A.2
Liu, X.3
Woerner, N.4
Rensch, T.5
Eismann, M.6
-
7
-
-
57749093369
-
Conditional repression of AUXIN BINDING PROTEIN1 reveals that it coordinates cell division and cell expansion during postembryonic shoot development in Arabidopsis and tobacco
-
Braun, N., Wyrzykowska, J., Muller, P., David, K., Couch, D., Perrot-Rechenmann, C., et al. (2008). Conditional repression of AUXIN BINDING PROTEIN1 reveals that it coordinates cell division and cell expansion during postembryonic shoot development in Arabidopsis and tobacco. Plant Cell 20, 2746-2762.
-
(2008)
Plant Cell
, vol.20
, pp. 2746-2762
-
-
Braun, N.1
Wyrzykowska, J.2
Muller, P.3
David, K.4
Couch, D.5
Perrot-Rechenmann, C.6
-
8
-
-
71149122029
-
Mechanism of auxin-regulated gene expression in plants
-
Chapman, E. J., and Estelle, M. (2009). Mechanism of auxin-regulated gene expression in plants. Annu. Rev. Genet. 43, 265-285.
-
(2009)
Annu. Rev. Genet.
, vol.43
, pp. 265-285
-
-
Chapman, E.J.1
Estelle, M.2
-
9
-
-
0032425253
-
The Arabidopsis thaliana AGRAVITROPIC 1 gene encodes a component of the polar-auxin-transport efflux carrier
-
Chen, R., Hilson, P., Sedbrook, J., Rosen, E., Caspar, T., and Masson, P. H. (1998). The Arabidopsis thaliana AGRAVITROPIC 1 gene encodes a component of the polar-auxin-transport efflux carrier. Proc. Natl. Acad. Sci. U.S.A. 95, 15112-15117.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 15112-15117
-
-
Chen, R.1
Hilson, P.2
Sedbrook, J.3
Rosen, E.4
Caspar, T.5
Masson, P.H.6
-
10
-
-
78650965806
-
Unraveling the evolution of auxin signaling
-
De Smet, I., Voss, U., Lau, S., Wilson, M., Shao, N., Timme, R. E., et al. (2011). Unraveling the evolution of auxin signaling. Plant Physiol. 155, 209-221.
-
(2011)
Plant Physiol.
, vol.155
, pp. 209-221
-
-
De Smet, I.1
Voss, U.2
Lau, S.3
Wilson, M.4
Shao, N.5
Timme, R.E.6
-
11
-
-
84864247390
-
ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis
-
Ding, Z., Wang, B., Moreno, I., Dupláková, N., Simon, S., Carraro, N., et al. (2012). ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nat. Commun. 3, 941.
-
(2012)
Nat. Commun.
, vol.3
, pp. 941
-
-
Ding, Z.1
Wang, B.2
Moreno, I.3
Dupláková, N.4
Simon, S.5
Carraro, N.6
-
12
-
-
84864361348
-
AUXOLOGY: When auxin meets plant evo-devo
-
Finet, C., and Jaillais, Y. (2012). AUXOLOGY: when auxin meets plant evo-devo. Dev. Biol. 369, 19-31.
-
(2012)
Dev. Biol.
, vol.369
, pp. 19-31
-
-
Finet, C.1
Jaillais, Y.2
-
13
-
-
0032545346
-
Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue
-
Gälweiler, L., Guan, C., Müller, A., Wisman, E., Mendgen, K., Yephremov, A., et al. (1998). Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282, 2226-22230.
-
(1998)
Science
, vol.282
, pp. 2226-22230
-
-
Gälweiler, L.1
Guan, C.2
Müller, A.3
Wisman, E.4
Mendgen, K.5
Yephremov, A.6
-
14
-
-
29344462521
-
Cellular efflux of auxincatalyzed by the Arabidopsis MDR/PGP transporter AtPGP1
-
Geisler, M., Blakeslee, J. J., Bouchard, R., Lee, O. R., Vincenzetti, V., Bandyopadhyay, A., et al. (2005). Cellular efflux of auxincatalyzed by the Arabidopsis MDR/PGP transporter AtPGP1. Plant J. 44, 179-194.
-
(2005)
Plant J.
, vol.44
, pp. 179-194
-
-
Geisler, M.1
Blakeslee, J.J.2
Bouchard, R.3
Lee, O.R.4
Vincenzetti, V.5
Bandyopadhyay, A.6
-
15
-
-
0001238901
-
Photoaffinitylabeling of indole-3-acetic acid-binding proteins in maize
-
Jones, A. M., and Venis, M. A. (1989). Photoaffinitylabeling of indole-3-acetic acid-binding proteins in maize. Proc. Natl. Acad. Sci. U.S.A. 86, 6153-6156.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 6153-6156
-
-
Jones, A.M.1
Venis, M.A.2
-
16
-
-
79551651226
-
The Arabidopsis cell cycle F-box protein SKP2A binds to auxin
-
Jurado, S., Abraham, Z., Manzano, C., López-Torrejón, G., Pacios, L. F., and Del Pozo, J. C. (2010). The Arabidopsis cell cycle F-box protein SKP2A binds to auxin. Plant Cell 22, 3891-3904.
-
(2010)
Plant Cell
, vol.22
, pp. 3891-3904
-
-
Jurado, S.1
Abraham, Z.2
Manzano, C.3
López-Torrejón, G.4
Pacios, L.F.5
Del Pozo, J.C.6
-
17
-
-
77951919340
-
The PIN-FORMED (PIN) protein family of auxin transporters
-
Krecek, P., Skupa, P., Libus, J., Naramoto, S., Tejos, R., Friml, J., et al. (2009). The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biol. 10, 249.
-
(2009)
Genome Biol.
, vol.10
, pp. 249
-
-
Krecek, P.1
Skupa, P.2
Libus, J.3
Naramoto, S.4
Tejos, R.5
Friml, J.6
-
18
-
-
36448991500
-
ClustalW and clustalX version 2 (2007)
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., et al. (2007). ClustalW and clustalX version 2 (2007). Bioinformatics 23, 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
19
-
-
33744525635
-
Dynamic integration of auxin transport and signalling
-
Leyser, O. (2006). Dynamic integration of auxin transport and signalling. Curr. Biol. 16, R424-33.
-
(2006)
Curr. Biol.
, vol.16
-
-
Leyser, O.1
-
20
-
-
0032527679
-
EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana
-
Luschnig, C., Gaxiola, R. A., Grisafi, P., and Fink, G. R. (1998). EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana. Genes Dev. 12, 2175-2187.
-
(1998)
Genes Dev.
, vol.12
, pp. 2175-2187
-
-
Luschnig, C.1
Gaxiola, R.A.2
Grisafi, P.3
Fink, G.R.4
-
21
-
-
67649525152
-
Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter
-
Mravec, J., Skupa, P., Bailly, A., Hoyerová, K., Krecek, P., Bielach, A., et al. (2009). Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature 459, 1136-1140.
-
(2009)
Nature
, vol.459
, pp. 1136-1140
-
-
Mravec, J.1
Skupa, P.2
Bailly, A.3
Hoyerová, K.4
Krecek, P.5
Bielach, A.6
-
22
-
-
0040389673
-
AtPIN2 defines a locus of Arabidopsis for root gravitropism control
-
Müller, A., Guan, C., Gälweiler, L., Tänzler, P., Huijser, P., Marchant, A., et al. (1998). AtPIN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J. 17, 6903-6911.
-
(1998)
EMBO J.
, vol.17
, pp. 6903-6911
-
-
Müller, A.1
Guan, C.2
Gälweiler, L.3
Tänzler, P.4
Huijser, P.5
Marchant, A.6
-
24
-
-
33646547313
-
PIN proteins perform a rate-limiting function in cellular auxin efflux
-
Petrásek, J., Mravec, J., Bouchard, R., Blakeslee, J. J., Abas, M., Seifertová, D., et al. (2006). PIN proteins perform a rate-limiting function in cellular auxin efflux. Science 312, 914-918.
-
(2006)
Science
, vol.312
, pp. 914-918
-
-
Petrásek, J.1
Mravec, J.2
Bouchard, R.3
Blakeslee, J.J.4
Abas, M.5
Seifertová, D.6
-
25
-
-
77957237505
-
ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis
-
Robert, S., Kleine-Vehn, J., Barbez, E., Sauer, M., Paciorek, T., Baster, P., et al. (2010). ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis. Cell 143, 111-121.
-
(2010)
Cell
, vol.143
, pp. 111-121
-
-
Robert, S.1
Kleine-Vehn, J.2
Barbez, E.3
Sauer, M.4
Paciorek, T.5
Baster, P.6
-
26
-
-
84866424536
-
Cellular auxin homeostasis: Gatekeeping is housekeeping
-
Ruiz Rosquete, M., Barbez, E., and Kleine-Vehn, J. (2012). Cellular auxin homeostasis: gatekeeping is housekeeping. Mol. Plant 5, 772-786.
-
(2012)
Mol. Plant
, vol.5
, pp. 772-786
-
-
Ruiz Rosquete, M.1
Barbez, E.2
Kleine-Vehn, J.3
-
27
-
-
32344433222
-
A report on single exon genes (seg) in eukaryotes
-
Sakharkar, M. K., Chow, V. T. K., Chaturvedi, I., Mathura, V. S., Shapshak, P., and Kangueane, P. (2004). A report on single exon genes (seg) in eukaryotes. Front. Biosci. 9, 3262-3267.
-
(2004)
Front. Biosci.
, vol.9
, pp. 3262-3267
-
-
Sakharkar, M.K.1
Chow, V.T.K.2
Chaturvedi, I.3
Mathura, V.S.4
Shapshak, P.5
Kangueane, P.6
-
28
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T. D., and Stephens, R. M. (1990). Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18, 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
29
-
-
10244225308
-
TMRPres2D: High quality visual representation of transmembrane protein models
-
Spyropoulos, I. C., Liakopoulos, T. D., Bagos, P. G., and Hamodrakas, S. J. (2004). TMRPres2D: high quality visual representation of transmembrane protein models. Bioinformatics 20, 3258-3260.
-
(2004)
Bioinformatics
, vol.20
, pp. 3258-3260
-
-
Spyropoulos, I.C.1
Liakopoulos, T.D.2
Bagos, P.G.3
Hamodrakas, S.J.4
-
30
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
31
-
-
41149160430
-
Auxin as a model for the integration of hormonal signal processing and transduction
-
Teale, W. D., Ditengou, F. A., Dovzhenko, A. D., Li, X., Molendijk, A. M., Ruperti, B., et al. (2008). Auxin as a model for the integration of hormonal signal processing and transduction. Mol. Plant 1, 229-237.
-
(2008)
Mol. Plant
, vol.1
, pp. 229-237
-
-
Teale, W.D.1
Ditengou, F.A.2
Dovzhenko, A.D.3
Li, X.4
Molendijk, A.M.5
Ruperti, B.6
-
32
-
-
70349508947
-
The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth
-
doi:10.1371/journal.pone.0006648
-
Tromas, A., Braun, N., Muller, P., Khodus, T., Paponov, I. A., Palme, K., et al. (2009). The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth. PLoS ONE 4, e6648. doi:10.1371/journal.pone.0006648
-
(2009)
PLoS ONE
, vol.4
-
-
Tromas, A.1
Braun, N.2
Muller, P.3
Khodus, T.4
Paponov, I.A.5
Palme, K.6
-
33
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Applications to topology prediction
-
Tusnády, G. E., and Simon, I. (1998). Principles governing amino acid composition of integral membrane proteins: applications to topology prediction. J. Mol. Biol. 283, 489-506.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnády, G.E.1
Simon, I.2
-
34
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
Tusnády, G. E., and Simon, I. (2001). The HMMTOP transmembrane topology prediction server. Bioinformatics 17, 849-850.
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
Tusnády, G.E.1
Simon, I.2
-
35
-
-
0032191085
-
Agr, an agravitropic locus of Arabidopsis thaliana, encodes a novel membrane-protein family member
-
Utsuno, K., Shikanai, T., Yamada, Y., and Hashimoto, T. (1998). Agr, an agravitropic locus of Arabidopsis thaliana, encodes a novel membrane-protein family member. Plant Cell Physiol. 39, 1111-1118.
-
(1998)
Plant Cell Physiol.
, vol.39
, pp. 1111-1118
-
-
Utsuno, K.1
Shikanai, T.2
Yamada, Y.3
Hashimoto, T.4
-
36
-
-
84856569514
-
Dissecting plant genomes with the PLAZA comparative genomics platform
-
Van Bel, M., Proost, S., Wischnitzki, E., Movahedi, S., Scheerlinck, C., Van de Peer, Y., et al. (2012). Dissecting plant genomes with the PLAZA comparative genomics platform. Plant Physiol. 158, 590-600.
-
(2012)
Plant Physiol.
, vol.158
, pp. 590-600
-
-
Van Bel, M.1
Proost, S.2
Wischnitzki, E.3
Movahedi, S.4
Scheerlinck, C.5
Van de Peer, Y.6
-
37
-
-
62149148505
-
Auxin: A trigger for change in plant development
-
Vanneste, S., and Friml, J. (2009). Auxin: a trigger for change in plant development. Cell 136, 1005-1016.
-
(2009)
Cell
, vol.136
, pp. 1005-1016
-
-
Vanneste, S.1
Friml, J.2
-
38
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S., and Goldman, N. (2001). A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
39
-
-
33646562869
-
Polar PIN localization directs auxin flow in plants
-
Wisniewska, J., Xu, J., Seifertová, D., Brewer, P. B., Ruzicka, K., Blilou, I., et al. (2006). Polar PIN localization directs auxin flow in plants. Science 312, 883.
-
(2006)
Science
, vol.312
, pp. 883
-
-
Wisniewska, J.1
Xu, J.2
Seifertová, D.3
Brewer, P.B.4
Ruzicka, K.5
Blilou, I.6
-
40
-
-
29544440203
-
A receptor for auxin
-
Woodward, A. W., and Bartel, B. (2005). A receptor for auxin. Plant Cell 17, 2425-2429.
-
(2005)
Plant Cell
, vol.17
, pp. 2425-2429
-
-
Woodward, A.W.1
Bartel, B.2
-
41
-
-
77957242676
-
Cell surface-and rho GTPase-based auxin signaling controls cellular interdigitation in Arabidopsis
-
Xu, T., Wen, M., Nagawa, S., Fu, Y., Chen, J.-G., Wu, M.-J., et al. (2010). Cell surface-and rho GTPase-based auxin signaling controls cellular interdigitation in Arabidopsis. Cell 143, 99-110.
-
(2010)
Cell
, vol.143
, pp. 99-110
-
-
Xu, T.1
Wen, M.2
Nagawa, S.3
Fu, Y.4
Chen, J.-G.5
Wu, M.-J.6
-
42
-
-
17844387345
-
Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana
-
Yogeeswaran, K., Frary, A., York, T. L., Amenta, A., Lesser, A. H., Nasrallah, J. B., et al. (2005). Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. Genome Res. 15, 505-515.
-
(2005)
Genome Res.
, vol.15
, pp. 505-515
-
-
Yogeeswaran, K.1
Frary, A.2
York, T.L.3
Amenta, A.4
Lesser, A.H.5
Nasrallah, J.B.6
-
43
-
-
77956826794
-
Auxin transporters-why so many?
-
Zazímalová, E., Murphy, A. S., Yang, H., Hoyerová, K., and Hosek, P. (2010). Auxin transporters-why so many? Cold Spring Harb. Perspect. Biol. 2, a001552.
-
(2010)
Cold Spring Harb. Perspect. Biol.
, vol.2
-
-
Zazímalová, E.1
Murphy, A.S.2
Yang, H.3
Hoyerová, K.4
Hosek, P.5
-
44
-
-
84859143013
-
Auxin biosynthesis: A simple two-step pathway converts tryptophan to indole-3-acetic acid in plants
-
Zhao, Y. (2012). Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol. Plant 5, 334-338.
-
(2012)
Mol. Plant
, vol.5
, pp. 334-338
-
-
Zhao, Y.1
-
45
-
-
80053520371
-
The roles and evolutionary patterns of intronless genes in deuterostomes
-
Zou, M., Guo, B., and He, S. (2011). The roles and evolutionary patterns of intronless genes in deuterostomes. Comp. Funct. Genomics 2011, 1-8.
-
(2011)
Comp. Funct. Genomics
, vol.2011
, pp. 1-8
-
-
Zou, M.1
Guo, B.2
He, S.3
|