Proteomic Analysis of Pseudomonas putida Reveals an Organic Solvent Tolerance-Related Gene mmsB

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Ni, Ye ^a   Song, Liang ^a   Qian, Xiaohong ^a   Sun, Zhihao ^a  

^a JIANGNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

3 HYDOXYISOBUTYRATE DEHYDROGENASE; ARGININE DEIMINASE; CARBON NITROGEN HYDROLASE; CELL PROTEIN; CYCLOHEXANE; ELONGATION FACTOR TS; HYDROLASE; ISOCHORISMATASE; ORGANIC SOLVENT; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; CELL GROWTH; CONTROLLED STUDY; DNA SEQUENCE; ESCHERICHIA COLI; GENE; GENE IDENTIFICATION; GENOME ANALYSIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MMSB GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEOMICS; PSEEN0851 GENE; PSEUDOMONAS PUTIDA; SEQUENCE ANALYSIS; TSF GENE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ADAPTATION, BIOLOGICAL; BACTERIAL PROTEINS; CYCLOHEXANES; DRUG TOLERANCE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; OXIDATION-REDUCTION; PROTEOME; PROTEOMICS; PSEUDOMONAS PUTIDA; SOLVENTS;

EID: 84873709795     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055858     Document Type: Article

References (33)

1. de Carvalho CCCR, (2011) Enzymatic and whole cell catalysis: Finding new strategies for old processes. Biotechnol Adv 29: 75-83.
2. Heipieper HJ, Neumann G, Cornelissen S, Meinhardt F, (2007) Solvent-tolerant bacteria for biotransformations in two-phase fermentation systems. Appl Microbiol Biotechnol 74: 961-973.
3. Husken LE, Oomes M, Schroen K, Tramper J, de Bont JAM, et al. (2002) Membrane-facilitated bioproduction of 3-methylcatechol in an octanol/water two-phase system. J Biotechnol 96: 281-289.
4. Wierckx NJP, Ballerstedt H, de Bont JAM, Wery J, (2005) Engineering of solvent-tolerant Pseudomonas putida S12 for bioproduction of phenol from glucose. Appl Environ Microbiol 71: 8221-8227.
5. Zhang W, Ni Y, Sun Z, Zheng P, Lin W, et al. (2009) Biocatalytic synthesis of ethyl (R)-2-hydroxy-4-phenylbutyrate with Candida krusei SW2026: A practical process for high enantiopurity and product titer. Process Biochem 44: 1270-1275.
6. Aono R, Kobayashi H, Joblin KN, Horikoshi K, (1994) Effects of organic solvents on growth of Escherichia coli K-12. Biosci Biotechnol Biochem 58: 2009-2014.
7. Kieboom J, Dennis JJ, Zylstra GJ, de Bont JAM, (1998) Active efflux of organic solvents by Pseudomonas putida S12 is induced by solvent. J Bacteriol 180: 6769-6722.
8. Kobayashi H, Yamamoto M, Aono R, (1998) Appearance of a stress response protein, phage shock protein A, in Escherichia coli exposed to hydrophobic organic solvents. Microbiology 144: 353-359.
9. Sardessai Y, Bhosle S, (2002) Tolerance of bacteria to organic solvents. Res Microbiol 153: 263-268.
10. Inoue A, Horikoshi K, (1989) A Pseudomonas thrives in high concentrations of toluene. Nature 227: 264-265.
11. Bernal P, Segura A, Ramos JL, (2007) Compensatory role of the cis-trans-isomerase and cardiolipin synthase in the membrane fluidity of Pseudomonas putida DOT-T1E. Appl Environ Microbiol 9: 1658-1664.
12. Isken S, de Bont JA, (1996) Active efflux of toluene in a solvent tolerant bacterium. J Bacteriol 178: 6056-6058.
13. Ramos JL, Duque E, Godoy P, Segura A, (1998) Efflux pumps involved in toluene tolerance in Pseudomonas putida DOT-T1E. J Bacteriol 180: 3323-3329.
14. Rojas A, Duque E, Mosqueda G, Golden G, Hurtado A, et al. (2001) Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E. J Bacteriol 183: 3967-3973.
15. Rojas A, Segura A, Guazzaroni ME, Teran W, Hurtado A, et al. (2003) In vivo and in vitro evidence that TtgV is the specific regulator of the TtgGHI multidrug and solvent efflux pump of Pseudomonas putida. J Bacteriol 185: 4755-4763.
16. Godoy P, Ramos-Gonzalez MI, Ramos JL, (2001) Involvement of the TonB system in tolerance to solvents and drugs in Pseudomonas putida DOT-T1E. J Bacteriol 183: 5285-5292.
17. Segura A, Hurtado A, Duque E, Ramos JL, (2004) Transcriptional phase variation at the flhB gene of Pseudomonas putida DOT-T1E is involved in response to environmental changes and suggests the participation of the flagellar export system in solvent tolerance. J Bacteriol 186: 1905-1909.
18. Aono R, Albe K, Inoue A, Horikoshi K, (1991) Preparation of organic solvent tolerant mutants from Escherichia coli K-12. Agric Biol Chem 55: 1935-1938.
19. Aono R, Kobayashi H, (1997) Cell surface properties of organic solvent-tolerant mutants of Escherichia coli K-12. Appl Environ Microbiol 63: 3637-3642.
20. Aono R, Tsukagoshi N, Yamamoto M, (1998) Involvement of outer membrane protein TolC, a possible member of the mar-sox regulon, in maintenance and improvement of organic solvent tolerance of Escherichia coli K-12. J Bacteriol 180: 938-944.
21. Kawarai T, Ogihara H, Furukawa S, Aono R, Kishima M, et al. (2005) High hydrostatic pressure treatment impairs AcrAB-TolC pump resulting in differential loss of deoxycholate tolerance in Escherichia coli. J Biosci Bioeng 100: 613-616.
22. Hayashi S, Aono R, Hanai T, Mori H, Kobayashi T, et al. (2003) Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays. J Biosci Bioeng 95: 379-383.
23. Shimizu K, Hayashi S, Kako T, Suzuki M, Tsukagoshi N, et al. (2005) Discovery of glpC, an organic solvent tolerance-related gene in Escherichia coli, using gene expression profiles from DNA microarrays. Appl Environ Microbiol 71: 1093-1096.
24. Shimizu K, Hayashi S, Doukyu N, Kobayashi T, Honda H, (2005) Time-course data analysis of gene expression profiles reveals purR regulon concerns in organic solvent tolerance in Escherichia coli. J Biosci Bioeng 99: 72-74.
25. Okochi M, Kurimoto M, Shimizu K, Honda H, (2007) Increase of organic solvent tolerance by overexpression of manXYZ in Escherichia coli. J Microbiol Biotechnol 73: 1394-1399.
26. Segura A, Godoy P, Van Dillewijn P, Hurtado A, Arroyo N, et al. (2005) Proteomic analysis reveals the participation of energy-and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene. J Bacteriol 17: 5937-594.
27. Volkers RJM, De Jong AL, Hulst AG, Van Baar BLM, de Bont JAM, et al. (2006) Chemostat-based proteomic analysis of toluene-affected Pseudomonas putida S12. Environ Microbiol 8: 1674-1679.
28. Cheng Z, Woody OZ, Song J, Glick BR, McConkey BJ, (2009) Proteome reference map for the plant growth-promoting bacterium Pseudomonas putida UW4. Proteomics 9: 4271-4274.
29. Chowdhury EK, Akaishi Y, Nagata S, Misono H, (2003) Cloning and overexpression of the 3-hydroxyisobutyrate dehydrogenase gene from Pseudomonas putida E23. Biosci Biotechnol Biochem 67: 438-441.
30. Vodovar N, Vallenet D, Cruveiller S, Rouy Z, Barbe V, et al. (2006) Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nat Biotechnol 24: 673-679.
31. Adams MJ, Ellis GH, Gover S, Naylor CE, Phillips C, (1994) Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism. Structure 2: 651-668.
32. Hawes JW, Harper ET, Crabb DW, Harris RA, (1996) Structural and mechanistic similarities of 6-phosphogluconate and 3-hydroxyisobutyrate dehydrogenases reveal a new enzyme family, the 3-hydroxyacid dehydrogenases. FEBS Lett 389: 263-267.
33. Poole K, Krebs K, McNally C, Neshat S, (1993) Multiple antibiotic resistance in Pseudomonas aeruginosa: evidence for involvement of an efflux operon. J Bacteriol 175: 7363-7372.