Dehydration-induced WRKY genes from tobacco and soybean respond to jasmonic acid treatments in BY-2 cell culture

Biochemical and Biophysical Research Communications

Volumn 431, Issue 3, 2013, Pages 409-414

  Rabara, Roel C ^a   Tripathi, Prateek ^a   Lin, Jun ^a   Rushton, Paul J ^a  

^a SOUTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

Abiotic stress; Jasmonic acid; Tobacco BY 2; Transcription factors; WRKY

Indexed keywords

ABSCISIC ACID; GREEN FLUORESCENT PROTEIN; JASMONIC ACID; MACROGOL; SODIUM CHLORIDE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR WRKY; UNCLASSIFIED DRUG;

ABIOTIC STRESS; ARTICLE; CELL CULTURE; COMPUTER MODEL; CONTROLLED STUDY; GENE SEQUENCE; MICROARRAY ANALYSIS; NONHUMAN; PHYLOGENY; PLANT GENE; PRIORITY JOURNAL; PROMOTER REGION; REGULATORY SEQUENCE; SOYBEAN; TOBACCO; UPREGULATION; WATER STRESS;

CELLS, CULTURED; CYCLOPENTANES; DROUGHTS; GENE EXPRESSION REGULATION, PLANT; OXYLIPINS; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; SOYBEANS; STRESS, PHYSIOLOGICAL; TOBACCO; TRANSCRIPTION FACTORS;

GLYCINE MAX; NICOTIANA TABACUM;

EID: 84873705334     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2012.12.156     Document Type: Article

References (37)

1. Jaillais Y., Chory J. Unraveling the paradoxes of plant hormone signaling integration. Nat. Struct. Mol. Biol. 2010, 17:642-645.
2. Eyidogan F., Oz M.T., Yucel M., Oktem H.A. Signal transduction of phytohormones under abiotic stresses phytohormones and abiotic stress tolerance in plants 2012, 1-48. Springer, Berlin Heidelberg. N.A. Khan, R. Nazar, N. Iqbal, N.A. Anjum (Eds.).
3. Peleg Z., Blumwald E. Hormone balance and abiotic stress tolerance in crop plants. Curr. Opin. Plant Biol. 2011, 14:290-295.
4. Santner A., Estelle M. The ubiquitin-proteasome system regulates plant hormone signaling. Plant J. 2010, 61:1029-1040.
5. Yamaguchi-Shinozaki K., Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 2006, 57:781-803.
6. Tuteja N. Abscisic acid and abiotic stress signaling. Plant Signal. Behav. 2007, 2:135-138.
7. Udvardi M.K., Kakar K., Wandrey M., Montanari O., Murray J., Andriankaja A., Zhang J.Y., Benedito V., Hofer J.M., Chueng F., Town C.D. Legume transcription factors: global regulators of plant development and response to the environment. Plant Physiol. 2007, 144:538-549.
8. Ulker B., Somssich I.E. WRKY transcription factors: from DNA binding towards biological function. Curr. Opin. Plant Biol. 2004, 7:491-498.
9. Rushton P.J., Somssich I.E., Ringler P., Shen Q.J. WRKY transcription factors. Trends Plant Sci. 2010, 15:247-258.
10. Eulgem T., Rushton P.J., Robatzek S., Somssich I.E. The WRKY superfamily of plant transcription factors. Trends Plant Sci. 2000, 5:199-206.
11. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
12. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
13. Tripathi P., Rabara R.C., Langum T.J., Boken A.K., Rushton D.L., Boomsma D.D., Rinerson C.I., Rabara J., Reese R.N., Chen X., Rohila J.S., Rushton P.J. The WRKY transcription factor family in brachypodium distachyon. BMC Genomics 2012, 13:270.
14. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
15. Becker D., Kemper E., Schell J., Masterson R. New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol. Biol. 1992, 20:1195-1197.
16. Rushton P.J., Reinstadler A., Lipka V., Lippok B., Somssich I.E. Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. Plant Cell 2002, 14:749-762.
17. Zhang H.B., Bokowiec M.T., Rushton P.J., Han S.C., Timko M.P. Tobacco transcription factors NtMYC2a and NtMYC2b form nuclear complexes with the NtJAZ1 repressor and regulate multiple jasmonate-inducible steps in nicotine biosynthesis. Mol. Plant 2012, 5:73-84.
18. Benjamini Y., Hochberg Y. Controlling the false discovery rate-a practical and powerful approach to multiple testing. J. R. Stat. Soc., B Methodol. 1995, 57:289-300.
19. Ling J., Jiang W., Zhang Y., Yu H., Mao Z., Gu X., Huang S., Xie B. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics 2011, 12:471.
20. Shinozaki K., Yamaguchi-Shinozaki K. Gene networks involved in drought stress response and tolerance. J. Exp. Bot. 2007, 58:221-227.
21. Taji T., Ohsumi C., Iuchi S., Seki M., Kasuga M., Kobayashi M., Yamaguchi-Shinozaki K., Shinozaki K. Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J. 2002, 29:417-426.
22. Higo K., Ugawa Y., Iwamoto M., Korenaga T. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 1999, 27:297-300.
23. Rouster J., Leah R., Mundy J., Cameron-Mills V. Identification of a methyl jasmonate-responsive region in the promoter of a lipoxygenase 1 gene expressed in barley grain. Plant J. 1997, 11:513-523.
24. Xu B., Timko M. Methyl jasmonate induced expression of the tobacco putrescine N-methyltransferase genes requires both G-box and GCC-motif elements. Plant Mol. Biol. 2004, 55:743-761.
25. Wang Z., Zhu Y., Wang L., Liu X., Liu Y., Phillips J., Deng X. A WRKY transcription factor participates in dehydration tolerance in boea hygrometrica by binding to the W-box elements of the galactinol synthase (BhGolS1) promoter. Planta 2009, 230:1155-1166.
26. Eulgem T. Dissecting the WRKY web of plant defense regulators. PLoS Pathog. 2006, 2:e126.
27. Xu X.P., Chen C.H., Fan B.F., Chen Z.X. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 2006, 18:1310-1326.
28. Carretero-Paulet L., Galstyan A., Roig-Villanova I., Martinez-Garcia J.F., Bilbao-Castro J.R., Robertson D.L. Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae. Plant Physiol. 2010, 153:1398-1412.
29. Leivar P., Monte E., Al-Sady B., Carle C., Storer A., Alonso J.M., Ecker J.R., Quail P.H. The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell 2008, 20:337-352.
30. Lee S., Lee S., Yang K.Y., Kim Y.M., Park S.Y., Kim S.Y., Soh M.S. Overexpression of PRE1 and its homologous genes activates Gibberellin-dependent responses in Arabidopsis thaliana. Plant Cell. Physiol. 2006, 47:591-600.
31. Abe H., Urao T., Ito T., Seki M., Shinozaki K., Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 2003, 15:63-78.
32. Uno Y., Furihata T., Abe H., Yoshida R., Shinozaki K., Yamaguchi-Shinozaki K. Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. Proc. Natl. Acad. Sci. USA 2000, 97:11632-11637.
33. Ingle R.A., Schmidt U.G., Farrant J.M., Thomson J.A., Mundree S.G. Proteomic analysis of leaf proteins during dehydration of the resurrection plant Xerophyta viscosa. Plant Cell Environ. 2007, 30:435-446.
34. Shen Q., Zhang P., Ho T.H. Modular nature of abscisic acid (ABA) response complexes: composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley. Plant Cell 1996, 8:1107-1119.
35. Gomez-Porras J.L., Riano-Pachon D.M., Dreyer I., Mayer J.E., Mueller-Roeber B. Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice. BMC Genomics 2007, 8:260.
36. Straub P.F., Shen Q., Ho T.D. Structure and promoter analysis of an ABA- and stress-regulated barley gene, HVA1. Plant Mol. Biol. 1994, 26:617-630.
37. Wasternack C. Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Ann. Bot. 2007, 100:681-697.