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Volumn 13, Issue 8, 2012, Pages 3605-3609

Comparison of the gene expression profiles between smokers with and without lung cancer using RNA-seq

Author keywords

Gene expression profiles; Genes; Lung cancer; Rna seq; Smokers

Indexed keywords


EID: 84873628176     PISSN: 15137368     EISSN: 2476762X     Source Type: Journal    
DOI: 10.7314/APJCP.2012.13.8.3605     Document Type: Article
Times cited : (8)

References (30)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W (2010). Differential expression analysis for sequence count data. Genome Biol, 11, R106.
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 3
    • 0344157874 scopus 로고    scopus 로고
    • European consensus statement on lung cancer: risk factors and prevention. lung cancer panel
    • discussion 4-6
    • Biesalski HK, Bueno de Mesquita B, Chesson A, et al. (1998). European consensus statement on lung cancer: risk factors and prevention. lung cancer panel. CA Cancer J Clin, 48, 167-76; discussion 4-6.
    • (1998) CA Cancer J Clin , vol.48 , pp. 167-176
    • Biesalski, H.K.1    Bueno de Mesquita, B.2    Chesson, A.3
  • 4
    • 77249117360 scopus 로고    scopus 로고
    • Detection of single nucleotide varisations in expressed exons of the human genome using RNA-Seq
    • Chepelev I, Wei G, Tang Q, Zhao K (2009). Detection of single nucleotide varisations in expressed exons of the human genome using RNA-Seq. Nucleic Acids Res, 37, e106.
    • (2009) Nucleic Acids Res , vol.37
    • Chepelev, I.1    Wei, G.2    Tang, Q.3    Zhao, K.4
  • 5
    • 78751570979 scopus 로고    scopus 로고
    • Milos P M RNA sequencing: advances, challenges and opportunities
    • F.O
    • F O (2011). Milos P M RNA sequencing: advances, challenges and opportunities. Nat Rev Genet, 12, 87-98.
    • (2011) Nat Rev Genet , vol.12 , pp. 87-98
  • 6
    • 77953231368 scopus 로고    scopus 로고
    • Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
    • Gan Q, Chepelev I, Wei G, et al. (2010). Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. Cell Res, 20, 763-83.
    • (2010) Cell Res , vol.20 , pp. 763-783
    • Gan, Q.1    Chepelev, I.2    Wei, G.3
  • 7
    • 82355183893 scopus 로고    scopus 로고
    • Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq
    • Geng Chen KY, Shi L, Fang Z, et al. (2011). Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq. PLoS One, 21, e28318.
    • (2011) PLoS One , vol.21
    • Geng Chen, K.Y.1    Shi, L.2    Fang, Z.3
  • 8
    • 77249162660 scopus 로고    scopus 로고
    • Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion
    • Guo F LY, Liu Y, Wang J, Li Y, Li G (2010). Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion. Acta Biochim Biophys Sin (Shanghai), 42, 224-9.
    • (2010) Acta Biochim Biophys Sin (Shanghai) , vol.42 , pp. 224-229
    • Guo, F.L.Y.1    Liu, Y.2    Wang, J.3    Li, Y.4    Li, G.5
  • 9
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    • Guttman M, Garber M, Levin JZ, et al. (2010). Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol, 28, 503-10.
    • (2010) Nat Biotechnol , vol.28 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3
  • 10
    • 0142228320 scopus 로고    scopus 로고
    • Tobacco carcinogens, their biomarkers and tobacco-induced cancer
    • Hech SS (2003). Tobacco carcinogens, their biomarkers and tobacco-induced cancer. Nat Rev Cancer, 3, 733-44.
    • (2003) Nat Rev Cancer , vol.3 , pp. 733-744
    • Hech, S.S.1
  • 11
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W SBT, Lempicki R A (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc, 4, 44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang da, W.S.B.T.1    Lempicki, R.A.2
  • 12
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA (2009). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, 37, 1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 13
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: mapping massive amount of oligonucleotides to the genome
    • Hui Jiang WHW (2008). SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics, 25, 2395-6.
    • (2008) Bioinformatics , vol.25 , pp. 2395-2396
    • Hui Jiang, W.H.W.1
  • 14
    • 64549119707 scopus 로고    scopus 로고
    • Statistical inferences for isoform expression in RNA-Seq
    • Jiang H, Wong WH (2009). Statistical inferences for isoform expression in RNA-Seq. Bioinformatics, 25, 1026-32.
    • (2009) Bioinformatics , vol.25 , pp. 1026-1032
    • Jiang, H.1    Wong, W.H.2
  • 15
    • 62049085786 scopus 로고    scopus 로고
    • Transcriptome sequencing to detect gene fusions in cancer
    • Maher CA, Kumar-Sinha C, Cao X, et al. (2009). Transcriptome sequencing to detect gene fusions in cancer. Nature, 458, 97-101.
    • (2009) Nature , vol.458 , pp. 97-101
    • Maher, C.A.1    Kumar-Sinha, C.2    Cao, X.3
  • 16
    • 75649135574 scopus 로고    scopus 로고
    • RNA-seq: from technology to biology
    • Marguerat S, Bahler J (2010). RNA-seq: from technology to biology. Cell Mol Life Sci, 67, 569-79.
    • (2010) Cell Mol Life Sci , vol.67 , pp. 569-579
    • Marguerat, S.1    Bahler, J.2
  • 17
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, et al. (2008). RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res, 18, 1509-17.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3
  • 18
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi A, Williams BA, McCue K, et al. (2008). Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods, 5, 621-8.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3
  • 19
    • 75949115042 scopus 로고    scopus 로고
    • RNA-Seq: a method for comprehensive transcriptome analysis
    • Chapter 4, Unit 4
    • Nagalakshmi U, Waern K, Snyder M (2010). RNA-Seq: a method for comprehensive transcriptome analysis. Curr Protoc Mol Biol, Chapter 4, Unit 4 11 1-3.
    • (2010) Curr Protoc Mol Biol , vol.11 , pp. 1-3
    • Nagalakshmi, U.1    Waern, K.2    Snyder, M.3
  • 20
    • 0036740417 scopus 로고    scopus 로고
    • Differential expression of IgG Fc binding protein (FcgammaBP) in human normal thyroid tissue, thyroid adenomas and thyroid carcinomas
    • O'Donovan N, Fischer A, Abdo E, et al. (2002). Differential expression of IgG Fc binding protein (FcgammaBP) in human normal thyroid tissue, thyroid adenomas and thyroid carcinomas. J Endocrinol, 174, 517-24.
    • (2002) J Endocrinol , vol.174 , pp. 517-524
    • O'Donovan, N.1    Fischer, A.2    Abdo, E.3
  • 21
    • 78651476339 scopus 로고    scopus 로고
    • Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing
    • Pflueger D TS, Sboner A, Habegger L, et al. (2011). Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing. Genome Res, 21, 56-67.
    • (2011) Genome Res , vol.21 , pp. 56-67
    • Pflueger, D.T.S.1    Sboner, A.2    Habegger, L.3
  • 22
    • 0028301229 scopus 로고
    • Functionalalterations in adult and fetal hemoglobin Sassari Asp-alpha 126(H9)->His The role of alpha 1 alpha 2 contact
    • Sanna MT, Giardina B, Scatena R, et al. (1994). Functionalalterations in adult and fetal hemoglobin Sassari Asp-alpha 126(H9)->His. The role of alpha 1 alpha 2 contact. J Biol Chem, 269, 18338-42.
    • (1994) J Biol Chem , vol.269 , pp. 18338-18342
    • Sanna, M.T.1    Giardina, B.2    Scatena, R.3
  • 23
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • Sultan M, Schulz MH, Richard H, et al. (2008). A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science, 321, 956-60.
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1    Schulz, M.H.2    Richard, H.3
  • 24
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell C, Williams BA, Pertea G, et al. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol, 28, 511-5.
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3
  • 25
    • 74049089365 scopus 로고    scopus 로고
    • Metastasis associated lung adenocarcinoma transcript 1 is up-regulated in placenta previa increta/percreta and strongly associated with trophoblast-like cell invasion in vitro
    • Tseng JJ, HY, Hsu SL, Chou MM (2009). Metastasis associated lung adenocarcinoma transcript 1 is up-regulated in placenta previa increta/percreta and strongly associated with trophoblast-like cell invasion in vitro. Mol Hum Reprod, 15, 725-31.
    • (2009) Mol Hum Reprod , vol.15 , pp. 725-731
    • Tseng, J.J.H.Y.1    Hsu, S.L.2    Chou, M.M.3
  • 26
    • 0036500996 scopus 로고    scopus 로고
    • Colorectal cancer in mice genetically deficient in the mucin Muc2
    • Velcich A, Yang WC, Heyer J, et al. (2002). Colorectal cancer in mice genetically deficient in the mucin Muc2. Science, 295, 1726-9.
    • (2002) Science , vol.295 , pp. 1726-1729
    • Velcich, A.1    Yang, W.C.2    Heyer, J.3
  • 27
    • 0026500336 scopus 로고
    • Structure of the EF corner favors deamidation of asparaginyl residues in hemoglobin: the example of Hb La Roche-sur-Yon [beta 81 (EF5) Leu-His]
    • Wajcman H, Kister J, Vasseur C, et al. (1992). Structure of the EF corner favors deamidation of asparaginyl residues in hemoglobin: the example of Hb La Roche-sur-Yon [beta 81 (EF5) Leu-His]. Biochim Biophys Acta, 1138, 127-32.
    • (1992) Biochim Biophys Acta , vol.1138 , pp. 127-132
    • Wajcman, H.1    Kister, J.2    Vasseur, C.3
  • 28
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet, 10, 57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 29
    • 84863270506 scopus 로고    scopus 로고
    • Never smokers with lung cancer: analysis of genetic variants
    • Xiao H, Ding J, Gao S, et al. (2011). Never smokers with lung cancer: analysis of genetic variants. Asian Pac J Cancer Prev, 12, 2807-9.
    • (2011) Asian Pac J Cancer Prev , vol.12 , pp. 2807-2809
    • Xiao, H.1    Ding, J.2    Gao, S.3
  • 30
    • 0030450545 scopus 로고    scopus 로고
    • Overexpression of MUC5 genes is associated with early post-operative metastasis in non-small-cell lung cancer
    • Yu CJ, Yang PC, Shun CT, et al. (1996). Overexpression of MUC5 genes is associated with early post-operative metastasis in non-small-cell lung cancer. Int J Cancer, 69, 457-65.
    • (1996) Int J Cancer , vol.69 , pp. 457-465
    • Yu, C.J.1    Yang, P.C.2    Shun, C.T.3


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