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Volumn 1, Issue , 2012, Pages 616-621

Interaction trees: Optimizing ensembles of decision trees for gene-gene interaction detections

Author keywords

decision trees; ensemble learning; epistasis models; interaction detection

Indexed keywords

COMPLEX DISEASE; DETECTION PERFORMANCE; ENSEMBLE LEARNING; ENSEMBLE STRATEGIES; EXPONENTIAL COMPLEXITY; GENE-GENE INTERACTION; GENOME-WIDE ASSOCIATION STUDIES; HIGH DIMENSIONALITY; INPUT VARIABLES; INTERACTION DETECTION; MARGINAL EFFECTS; NONLINEAR EFFECT; RANDOM FORESTS; ROOT NODES; SEARCH SPACES; SELECTION CRITERIA; SIMULATION STUDIES; TRAINING DATA; TREE ENSEMBLES;

EID: 84873601962     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICMLA.2012.114     Document Type: Conference Paper
Times cited : (3)

References (23)
  • 1
    • 16844366786 scopus 로고    scopus 로고
    • Genome-wide strategies for detecting multiple loci that influence complex diseases
    • J. Marchini, P. Donnelly and L. R. Cardon. Genome-wide strategies fordetecting multiple loci that influence complex diseases. Nat. Genet.37(4), pp. 413-417. 2005.
    • (2005) Nat. Genet , vol.37 , Issue.4 , pp. 413-417
    • Marchini, J.1    Donnelly, P.2    Cardon, L.R.3
  • 2
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie humandiseases
    • H. J. Cordell. Detecting gene-gene interactions that underlie humandiseases. Nature Reviews Genetics AOP2009.
    • Nature Reviews Genetics AOP2009
    • Cordell, H.J.1
  • 4
  • 6
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • L. Breiman. Random forests. Mach. Learning 45(1), pp. 5-32. 2001.
    • (2001) Mach. Learning , vol.45 , Issue.1 , pp. 5-32
    • Breiman, L.1
  • 8
    • 25444453244 scopus 로고    scopus 로고
    • Screening large-scale association study data: Exploiting interactions using random forests
    • K. Lunetta, B. L. Hayward, J. Segal and P. Van Eerdewegh. Screeninglarge-scale association study data: Exploiting interactions usingrandom forests. BMC Genetics 5(1), 2004.
    • (2004) BMC Genetics , vol.5 , pp. 1
    • Lunetta, K.1    Hayward, B.L.2    Segal, J.3    Van Eerdewegh, P.4
  • 9
    • 60849093174 scopus 로고    scopus 로고
    • A random forest approach to thedetection of epistatic interactions in case-control studies
    • R. Jiang, W. Tang, X. Wu and W. Fu. A random forest approach to thedetection of epistatic interactions in case-control studies. BMCBioinformatics 10 Suppl 12009.
    • BMCBio Informatics , vol.10 , Issue.SUPPL. , pp. 12009
    • Jiang, R.1    Tang, W.2    Wu, X.3    Fu, W.4
  • 10
    • 79959442576 scopus 로고    scopus 로고
    • Detecting epistatic effects inassociation studies at a genomic level based on an ensemble approach
    • J. Li, B. Horstman and Y. Chen. Detecting epistatic effects inassociation studies at a genomic level based on an ensembleapproach. Bioinformatics 27(13), pp. 222-229. 2011.
    • (2011) Bioinformatics , vol.27 , Issue.13 , pp. 222-229
    • Li, J.1    Horstman, B.2    Chen, Y.3
  • 11
    • 84873599388 scopus 로고    scopus 로고
    • Data mining with decision trees theoryand applications
    • O. M. Lior Rokach, DATA MINING WITH DECISION TREES Theoryand Applications. World Scientific, 2007.
    • (2007) World Scientific
    • Lior Rokach, O.M.1
  • 12
    • 77956880851 scopus 로고    scopus 로고
    • Analysis and correction of bias in totaldecrease in node impurity measures for tree-based algorithms
    • M. Sandri and P. Zuccolotto. Analysis and correction of bias in totaldecrease in node impurity measures for tree-based algorithms.Statistics and Computing 20(4), pp. 393-407. 2010.
    • (2010) Statistics and Computing , vol.20 , Issue.4 , pp. 393-407
    • Sandri, M.1    Zuccolotto, P.2
  • 13
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • L. Breiman. Bagging predictors. Mach. Learning 24(2), pp. 123-140.1996.
    • (1996) Mach. Learning , vol.24 , Issue.2 , pp. 123-140
    • Breiman, L.1
  • 15
    • 0031211090 scopus 로고    scopus 로고
    • A decision-theoretic generalization ofon-line learning and an application to boosting
    • Y. Freund and R. E. Schapire. A decision-theoretic generalization ofon-line learning and an application to boosting. Journal of Computerand System Sciences 55(1), pp. 119-139. 1997.
    • (1997) Journal of Computerand System Sciences , vol.55 , Issue.1 , pp. 119-139
    • Freund, Y.1    Schapire, R.E.2
  • 17
    • 33745599582 scopus 로고    scopus 로고
    • A flexible computational framework for detecting,characterizing, and interpreting statistical patterns of epistasis ingenetic studies of human disease susceptibility
    • J. H. Moore, J. C. Gilbert, C. Tsai, F. Chiang, T. Holden, N. Barneyand B. C. White. A flexible computational framework for detecting,characterizing, and interpreting statistical patterns of epistasis ingenetic studies of human disease susceptibility. J. Theor. Biol. 241(2),pp. 252-261. 2006.
    • (2006) J. Theor. Biol , vol.241 , Issue.2 , pp. 252-261
    • Moore, J.H.1    Gilbert, J.C.2    Tsai, C.3    Chiang, F.4    Holden, T.5    Barney, N.6    White, B.C.7
  • 19
    • 84855175318 scopus 로고    scopus 로고
    • Detecting genome-wide epistases based onthe clustering of relatively frequent items
    • M. Xie, J. Li and T. Jiang. Detecting genome-wide epistases based onthe clustering of relatively frequent items. Bioinformatics 28(1), pp.5-12. 2012.
    • (2012) Bioinformatics , vol.28 , Issue.1 , pp. 5-12
    • Xie, M.1    Li, J.2    Jiang, T.3
  • 21
    • 41049102190 scopus 로고    scopus 로고
    • Generating samples for association studies based on hap map data
    • J. Li and Y. Chen. Generating samples for association studies based onHapMap data. BMC Bioinformatics 9pp. 44. 2008.
    • (2008) BMC Bioinformatics , vol.9 , pp. 44
    • Li, J.1    Chen, Y.2
  • 22
    • 84862804484 scopus 로고    scopus 로고
    • Generation of synthetic data and experimental designs in evaluating interactions for association studies
    • Y. Chen and J. Li, "Generation of Synthetic Data and ExperimentalDesigns in Evaluating Interactions for Association Studies," JBioinform Comput Biol, vol. 10, 2012.
    • (2012) JBioinform Comput Biol , vol.10
    • Chen, Y.1    Li, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.