Background-independent quantitative trait loci for drought tolerance identified using advanced backcross introgression lines in rice

Crop Science

Volumn 53, Issue 2, 2013, Pages 430-441

  Wang, Yun ^a,b   Zang, Jinping ^a,c   Sun, Yong ^a   Ali, Jahuar ^d   Xu, Jianlong ^a   Li, Zhikang ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b SHENYANG AGRICULTURAL UNIVERSITY   (China)

^c AGRICULTURAL UNIVERSITY OF HEBEI   (China)

^d INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

[No Author keywords available]

Indexed keywords

ORYZA SATIVA;

EID: 84873535975     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2012.06.0361     Document Type: Article

References (49)

1. Bernier, J., A. Kumar, R. Venuprasad, D. Spaner, and G.N. Atlin. 2007. A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice. Crop Sci. 47:507-518. doi:10.2135/cropsci2006.07.0495
2. Chang, T.T., B. Somrith, and J.C. O'Toole. 1979. Potential of improving drought resistance in rainfed lowland rice. In: Rainfed lowland rice: Selected papers from the 1978 International Rice Research Conference. International Rice Research Institute, Los Banos, Philippines. p. 149-164.
3. Cheng, L., Y. Wang, L. Meng, X. Hu, Y. Cui, Y. Sun, L. Zhu, J. Ali, J. Xu, and Z. Li. 2012. Identification of salt-tolerant QTLs with strong genetic background effect using two sets of reciprocal introgression lines in rice. Genome 55:45-55. doi:10.1139/g11-075
4. Fischer, K.S., S. Fukai, R. Lafitte, and G. McLaren. 2003a. Know your target environment. In: K.S. Fischer, R. Lafitte, S. Fukai, G. Atlin, and B. Hardy, editors, Breeding rice for drought-prone environments. International Rice Research Institute, Los Baños, Philippines. p. 5-11.
5. Fischer, K.S., R. Lafitte, S. Fukai, G. Atlin, and B. Hardy. 2003b. Breeding rice for drought-prone environments. International Rice Research Institute, Los Baños, Philippines.
6. Fischer, R.A., and R. Maurer. 1978. Drought resistance in spring wheat cultivars. I. Grain yield responses. Aust. J. Agric. Res. 29:897-912. doi:10.1071/AR9780897
7. Fukai, S., J. Basnayake, and M. Cooper. 2001. Modelling water availability, crop growth and yield of rainfed lowland rice genotypes in northeast Thailand. In: T.P Tuong, S.P. Kam, L. Wade, S. Pandey, B.A.M. Bouman, and B. Hardy, editors, Proceedings of the international workshop on characterizing and understanding rainfed environments, Bali, Indonesia. 5-9 Dec. 1999. International Rice Research Institute, Los Banos, Philippines. p. 111-130.
8. GRAMENE. 2011. GRAMENE database. Version no. 33, April 2011. Cold Spring Harbor Laboratory, Cold Spring Harbor, and Cornell University, Ithaca, NY. http://www.gramene.org/ (accessed 20 Aug. 2011).
9. Gu, J. 2007. Development of introgression lines of upland rice (Oryza sativa L.) and QTLs mapping on root traits. M.S. dissertation. China Agricultural University, Beijing, China.
10. Gu, J.F., X.Y. Yin, T.J. Stomph, H.Q. Wang, and P.C. Struik. 2012a. Physiological basis of genetic variation in leaf photosynthesis among rice (Oryza sativa L.) introgression lines under drought and well-watered conditions. J. Exp. Bot. 63:5137-5153. doi:10.1093/jxb/ers170
11. Gu, J.F., X.Y. Yin, P.C. Struik, T.J. Stomph, and H.Q. Wang. 2012b. Using chromosome introgression lines to map quantitative trait loci for photosynthesis parameters in rice (Oryza sativa L.) leaves under drought and well-watered field conditions. J. Exp. Bot. 63:455-469. doi:10.1093/jxb/err292
12. Hadiarto, T., and L.S. Tran. 2011. Progress studies of drought-responsive genes in rice. Plant Cell Rep. 30:297-310. doi:10.1007/s00299-010-0956-z
13. Hu, H., M. Dai, J. Yao, B. Xiao, X. Li, Q. Zhang, and L. Xiong. 2006. Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. Proc. Natl. Acad. Sci. USA 103:12987-12992. doi:10.1073/pnas.0604882103
14. Jeong, J.S., Y.S. Kim, K.H. Baek, H. Jung, S.H. Ha, Y. Do Choi, M. Kim, C. Reuzeau, and J.K. Kim. 2010. Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions. Plant Physiol. 153:185-197. doi:10.1104/pp.110.154773
15. Jongdee, B., S. Fukai, and M. Cooper. 2002. Leaf water potential and osmotic adjustment as physiological traits to improve drought tolerance in rice. Field Crops Res. 76:153-164. doi:10.1016/S0378-4290(02)00036-9
16. Kamoshita, A., R. Chandra Babu, N.M. Boopathi, and S. Fukai. 2008. Phenotypic and genotypic analysis of drought-resistance traits for development of rice cultivars adapted to rainfed environments. Field Crops Res. 109:1-23. doi:10.1016/j.fcr.2008.06.010
17. Kumar, A., J. Bernier, S. Verulkar, H.R. Lafitte, and G.N. Atlin. 2008. Breeding for drought tolerance: Direct selection for yield, response to selection and use of drought-tolerant donors in upland and lowland-adapted populations. Field Crops Res. 107:221-231. doi:10.1016/j.fcr.2008.02.007
18. Kumar, R., R. Venuprasad, and G.N. Atlin. 2007. Genetic analysis of rainfed lowland rice drought tolerance under naturally-occurring stress in eastern India: Heritability and QTL effects. Field Crops Res. 103:42-52. doi:10.1016/j.fcr.2007.04.013
19. Lafitte, H.R., Z. Li, C.H.M. Vijayakumar, Y.M. Gao, Y. Shi, J.L. Xu, B.Y. Fu, S.B. Yu, A.J. Ali, J. Domingo, R. Maghirang, R. Torres, and D. Mackill. 2006. Improvement of rice drought tolerance through backcross breeding: Evaluation of donors and selection in drought nurseries. Field Crops Res. 97:77-86. doi:10.1016/j.fcr.2005.08.017
20. Lanceras, J.C., G. Pantuwan, B. Jongdee, and T. Toojinda. 2004. Quantitative trait loci associated with drought tolerance at reproductive stage in rice. Plant Physiol. 135:384-399. doi:10.1104/pp.103.035527
21. Li, H.H., G.Y. Ye, and J.K. Wang. 2007. A modified algorithm for the improvement of composite interval mapping. Genetics 175:361-374. doi:10.1534/genetics.106.066811
22. Li, Z., P. Mu, C. Li, H. Zhang, Z. Li, Y. Gao, and X. Wang. 2005. QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments. Theor. Appl. Genet. 110:1244-1252. doi:10.1007/s00122-005-1958-z
23. Li, Z.K. 2001. QTL mapping in rice: A few critical considerations. In: G.S. Khush, D.S. Brar, and B. Hardy, editors, Rice genetics IV. Science Publishers, Inc., and International Rice Research Institute, New Delhi, India, and Los Banos, Philippines. p. 153-172.
24. Maccaferri, M., M.C. Sanguineti, S. Corneti, J.L. Ortega, M.B. Salem, J. Bort, E. DeAmbrogio, L.F. del Moral, A. Demontis, A. El-Ahmed, F. Maalouf, H. Machlab, V. Martos, M. Moragues, J. Motawaj, M. Nachit, N. Nserallah, H. Ouabbou, C. Royo, A. Slama, and R. Tuberosa. 2008. Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178:489-511. doi:10.1534/genetics.107.077297
25. MacMillan, K., K. Emrich, H.P. Piepho, C.E. Mullins, and A.H. Price. 2006. Assessing the importance of genotype × environment interaction for root traits in rice using a mapping population II: Conventional QTL analysis. Theor. Appl. Genet. 113:953-964. doi:10.1007/s00122-006-0357-4
26. Mukhopadhyay, A., S. Vij, and A.K. Tyagi. 2004. Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration and salt stress in transgenic tobacco. Proc. Natl. Acad. Sci. USA 101:6309-6314. doi:10.1073/pnas.0401572101
27. Ouk, M., J. Basnayake, M. Tsubo, S. Fukai, K.S. Fischer, M. Cooper, and H. Nesbitt. 2006. Use of drought response index for identification of drought tolerant genotypes in rainfed lowland rice. Field Crops Res. 99:48-58. doi:10.1016/j.fcr.2006.03.003
28. Ouyang, S.Q., Y.F. Liu, P. Liu, G. Lei, S.J. He, B. Ma, W.K. Zhang, J.S. Zhang, and S.Y. Chen. 2010. Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants. Plant J. 62:316-329. doi:10.1111/j.1365-313X.2010.04146.x
29. Pandey, S., and H. Bhandari. 2007. Introduction. In: S. Pandey, H. Bhandari, and B. Hardy, editors, Economic costs of drought and rice farmers's coping mechanisms: A cross-country comparative analysis. International Rice Research Institute, Los Baños, Philippines. p. 1-9.
30. Price, A.H., K.A. Steele, B.J. Moore, and R.G.W. Jones. 2002a. Upland rice grown in soil-filled chambers and exposed to contrasting water-deficit regimes. II. Mapping quantitative trait loci for root morphology and distribution. Field Crops Res. 76:25-43. doi:10.1016/S0378-4290(02)00010-2
31. Price, A.H., J. Towned, M.P. Jones, A. Audebert, and B. Courtois. 2002b. Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa. Plant Mol. Biol. 48:683-695. doi:10.1023/A:1014805625790
32. SAS Institute. 1996. SAS/STAT user's guide. SAS Institute, Cary, NC.
33. Shen, L., B. Courtois, K.L. McNally, S. Robin, and Z. Li. 2001. Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection. Theor. Appl. Genet. 103:75-83. doi:10.1007/s001220100538
34. Shinozaki, K., and K. Yamaguchi-Shinozaki. 2007. Gene networks involved in drought stress response and tolerance. J. Exp. Bot. 58:221-227. doi:10.1093/jxb/erl164
35. Steele, K.A., A.H. Price, H.E. Shashidhar, and J.R. Witcombe. 2006. Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety. Theor. Appl. Genet. 112:208-221. doi:10.1007/s00122-005-0110-4
36. Tanksley, S.D., and J.C. Nelson. 1996. Advanced backcross QTL analysis: A method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor. Appl. Genet. 92:191-203. doi:10.1007/BF00223376
37. Temnykh, S., G. Declerck, A. Lukashova, L. Lipovich, S. Cartinhour, and S. McCouch. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11:1441-1452. doi:10.1101/gr.184001
38. Tsubo, M., J. Basnayake, S. Fukai, V. Sihathep, P. Siyavong, Sipaseuth, and M. Chanphengsay. 2006. Toposequential effects on water balance and productivity in rainfed lowland rice ecosystem in Southern Laos. Field Crops Res. 97:209-220. doi:10.1016/j.fcr.2005.10.004
39. Venuprasad, R., M.E. Bool, C.O. Dalid, J. Bernier, A. Kumar, and G.N. Atlin. 2009. Genetic loci responding to two cycles of divergent selection for grain yield under drought stress in a rice breeding population. Euphytica 167:261-269. doi:10.1007/s10681-009-9898-3
40. Venuprasad, R., H.R. Lafitte, and G.N. Atlin. 2007. Response to direct selection for grain yield under drought stress in rice. Crop Sci. 47:285-293. doi:10.2135/cropsci2006.03.0181
41. Venuprasad, R., M.T. Sta Cruz, M. Amante, R. Magbanua, A. Kumar, and G.N. Atlin. 2008. Response to two cycles of divergent selection for grain yield under drought stress in four rice breeding populations. Field Crops Res. 107:232-244. doi:10.1016/j.fcr.2008.02.004
42. Verulkar, S.B., N.P. Mandal, J.L. Dwivedi, B.N. Singh, P.K. Sinha, R.N. Mahato, P. Dongre, O.N. Singh, L.K. Bose, P. Swain, S. Robin, R. Chandrababu, S. Senthil, A. Jain, H.E. Shashidhar, S. Hittalmani, C. Vera Cruz, T. Paris, A. Raman, S. Haefele, R. Serraj, G. Atlin, and A. Kumar. 2010. Breeding resilient and productive genotypes adapted to drought-prone rainfed ecosystem of India. Field Crops Res. 117:199-208. doi:10.1016/j.fcr.2010.03.005
43. Vikram, P., B.P. Swamy, S. Dixit, H.U. Ahmed, M. Teresa Sta Cruz, A.K. Singh, and A. Kumar. 2011. qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds. BMC Genet. 18:12-89.
44. Xiao, B., Y. Huang, N. Tang, and L. Xiong. 2007. Over-expression of a LEA gene in rice improves drought resistance under the field conditions. Theor. Appl. Genet. 115:35-46. doi:10.1007/s00122-007-0538-9
45. Xu, J.L., H.R. Lafitte, Y.M. Gao, B.Y. Fu, R. Torres, and Z.K. Li. 2005. QTLs for drought escape and tolerance identified in a set of random introgression lines of rice. Theor. Appl. Genet. 111:1642-1650. doi:10.1007/s00122-005-0099-8
46. Yue, B., L. Xiong, W. Xue, Y. Xing, L. Luo, and C. Xu. 2005. Genetic analysis for drought resistance of rice at reproductive stage in field with different types of soil. Theor. Appl. Genet. 111:1127-1136. doi:10.1007/s00122-005-0040-1
47. Yue, B., W. Xue, L. Luo, and Y. Xing. 2008. Identification of quantitative trait loci for four morphologic traits under water stress in rice (Oryza sativa L.). J. Genet. Genomics 35:569-575. doi:10.1016/S1673-8527(08)60077-6
48. Yue, B., W. Xue, L. Xiong, X. Yu, L. Luo, K. Cui, D. Jin, Y. Xing, and Q. Zhang. 2006. Genetic basis of drought resistance at reproductive stage in rice: Separation of drought tolerance from drought avoidance. Genetics 172:1213-1228. doi:10.1534/genetics.105.045062
49. Zheng, X., B. Chen, G. Lu, and B. Han. 2009. Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem. Biophys. Res. Commun. 379:985-989. doi:10.1016/j.bbrc.2008.12.163