Genetic analysis of rainfed lowland rice drought tolerance under naturally-occurring stress in eastern India: Heritability and QTL effects

Field Crops Research

Volumn 103, Issue 1, 2007, Pages 42-52

  Kumar, R ^a   Venuprasad, R ^b   Atlin, G N ^b  

^a INDIRA GANDHI AGRICULTURAL UNIVERSITY   (India)

^b INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Drought; Grain yield; Heritability; QTL; Rainfed lowland; Rice

Indexed keywords

CROPS; DROUGHT; PHYSIOLOGY; STRESS ANALYSIS;

DROUGHT YIELD; FLOWERING DATES; QUANTITATIVE TRAIT LOCI (QTL); RAINFED LOWLAND;

GENETIC ENGINEERING;

CROP YIELD; DROUGHT STRESS; GENETIC ANALYSIS; GENOTYPE; HERITABILITY; IRRIGATION; PADDY FIELD; RAINFED AGRICULTURE; RICE;

DROUGHT; FLOWERS; GENETIC ENGINEERING; RICE; YIELD;

ASIA; EURASIA; INDIA; MADHYA PRADESH; RAIPUR; SOUTH ASIA;

EID: 34347204497     PISSN: 03784290     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fcr.2007.04.013     Document Type: Article

References (30)

1. Atlin G.N., Cooper M., and Bjørnstad A. A comparison of formal and participatory breeding approaches using selection theory. Euphytica 122 (2001) 463-475
2. Atlin G.N., Lafitte R., Venuprasad R., Kumar R., and Jongdee B. Heritability of rice yield under stress, correlations across stress levels, and effects of selection: implications for drought tolerance breeding. In: Poland D., Sawkins M., Ribaut J.-M., and Hoisington D. (Eds). Proceedings of a Workshop on Resilient Crops for Water-Limited Environments. Cuernavaca, Mexico, 24-28 May 2004 (2004), CIMMYT, Mexico D.F. 85-87
3. Babu R.C., Nguyen B.D., Chamarerk V.P., Shanmugasundaram P., Chezhian P., Jeyaprakash S.K., Ganesh A., Palchamy S., Sadasivam S., Sarkarung S., Wade L.J., and Nguyen H.T. Genetic analysis of drought resistance in rice by molecular markers. Crop Sci. 43 (2003) 1457-1469
4. Barr H.D., and Weatherley P.E. A re-examination of the relative turgidity technique for estimating water deficit in leaves. Aust. J. Biol. Sci. 15 (1962) 413-428
5. Basten C.J., Weir B.S., and Zeng Z.-B. Zmap-a QTL cartographer. In: Smith C., Gavora J.S., Benkel B., Chesnais J., Fairfull W., Gibson J.P., Kennedy B.W., and Burnside E.B. (Eds). Proceedings of the 5th World Congress on Genetics Applied to Livestock Production: Computing Strategies and Software. Published by the Organizing Committee, 5th World Congress on Genetics Applied to Livestock Production, vol. 22. Guelph, Ontario, Canada (1994) 65-66
6. Basten C.J., Weir B.S., and Zeng Z.-B. QTL Cartographer, Version 1. 16. Department of Statistics (2002), North Carolina State University, Raleigh, NC
7. Bernier J., Kumar A., Venuprasad R., Spaner D., and Atlin G. A large-effect QTL for grain yield under reproductive-stage drought stress in upland rice. Crop Sci. 47 (2007) 505-517
8. Churchill G.A., and Doerge R.W. Empirical threshold values for quantitative trait mapping. Genetics 138 (1994) 963-971
9. Comstock R.E., and Moll R.H. Genotype-environment interactions. In: Hanson W.D., and Robinson H.F. (Eds). Statistical Genetics and Plant Breeding (1963), National Academy of Sciences and National Research Council, Washington, DC 164-196
10. Doerge R.W., and Churchill G.A. Permutation tests for multiple loci affecting a quantitative character. Genetics 142 (1996) 285-294
11. Edmeades G.O., Bolanos J., Lafitte H.R., Rajaram S., Pfeiffer W., and Fischer R.A. Traditional approaches to breeding for drought resistance in cereals. In: Baker F.W.G. (Ed). Drought Resistance in Cereals (1989), CAB International, Wallingford, Oxon, UK 353
12. Fukai S., and Cooper M. Development of drought-resistant cultivars using physiomorphological traits in rice. Field Crops Res. 40 (1995) 67-86
13. Fukai S., Pantuwan G., Jongdee B., and Cooper M. Screening for drought resistance in rainfed lowland rice. Field Crops Res. 64 (1999) 61-74
14. Garrity D.P., and O'Toole J.C. Screening rice for drought resistance at the reproductive phase. Field Crop Res. 39 (1994) 99-110
15. Jiang Y.Z., Bagali P., Gao Y.M., Lafitte R., Fu B.Y., Xu J.L., Maghirang R., Domingo R., Hittalmani S., Mackill D., and Li Z.K. High resolution mapping of a genomic region harboring several QTLs and sd1 in rice. In: Poland D., Sawkins M., Ribaut J.-M., and Hoisington D. (Eds). Proceedings of a Workshop on Resilient Crops for Water-Limited Environments. Cuernavaca, Mexico, 24-28 May 2004 (2004), CIMMYT, Mexico D.F. 215
16. Jongdee B., Fukai S., and Cooper M. Leaf water potential and osmotic adjustment as physiological traits to improve drought tolerance in rice. Field Crops Res. 76 (2002) 153-163
17. Kamoshita A., Zhang J., Siopongco J., Sarkarung S., Nguyen H.T., and Wade L.J. Effects of phenotyping environment on identification of QTL for rice root morphology under anaerobic conditions. Crop Sci. 42 (2002) 255-265
18. Lafitte H.R., Ismail A., and Bennet J. Abiotic stress tolerance in rice for Asia: progress and the future. In: Fischer T., Turner N., Angus J., McIntyre L., Robertson M., Borrell A., and Lyod D. (Eds). Proceedings of the Fourth International Crop Science Congress on New Directions for a Diverse Planet. Brisbane, Australia, 26 September-1 October 2004. Published on CDROM (2004). http://www.cropscience.org.au/ Website www.cropscience.org.au
19. Lanceras J., Pantuwan G., Jongdee B., and Toojinda T. Quantitative trait loci associated with drought tolerance at reproductive stage in rice. Plant Physiol. 135 (2004) 384-399
20. O'Toole J.C., and Soemartono. Evaluation of a simple technique for characterizing rice root systems in relation to drought tolerance. Euphytica 30 (1981) 283-290
21. Pandey S., Behura D.D., Vilano R., and Naik D. Economic Cost of Drought and Farmers' Coping Mechanisms: A Study of Rainfed Rice Systems in Eastern India (2000), International Rice Research Institute, Makati City, Philippines
22. Rosielle A.A., and Hamblin J. Theoretical aspects of selection for yield in stress and non-stress environments. Crop Sci. 21 (1981) 943-946
23. SAS Institute Inc. SAS/Stat User's Guide, Version 8.2. (1999), SAS institute, Inc., Cary, NC, USA
24. Spielmeyer W., Ellis M.H., and Chandler P.M. Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 9043-9048
25. Venuprasad R., Lafitte R., and Atlin G.N. Response to direct selection for grain yield under drought stress in rice. Crop Sci. 47 (2007) 285-293
26. Widawsky D.A., and O'Toole J.C. Prioritizing the rice research agenda for Eastern India (1990), The Rockefeller Foundation, New York USA
27. Yue B., Xiong L., Xue W., Xing Y., Luo L., and Xu C. Genetic analysis for drought resistance of rice at reproductive stage in field with different types of soil. Theor. Appl. Genet. 111 (2005) 1127-1136
28. Zeng Z. Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 10972-10976
29. Zeng Z. Precision mapping of quantitative trait loci. Genetics 136 (1994) 1457-1468
30. Zhang J., Zheng H.G., Aarti A., Pantuwan G., Nguyen T.T., Tripathy J.N., Sarial A.K., Robin S., Babu R.C., Nguyen B.D., Sarkarung S., Blum A., and Nguyen H.T. Locating genomic regions associated with components of drought resistance in rice: comparative mapping within and across species. Theor. Appl. Genet. 103 (2001) 19-29