-
1
-
-
0003851729
-
-
eds., For sale by the Superintendent of Documents, U.S. Government Printing Office, Washington, DC, Mathematical Reviews (MathSciNet): MR167642 Zentralblatt MATH: 0756.62031
-
Abramowitz, M. and Stegun, I. A., eds. (1964). Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables. National Bureau of Standards Applied Mathematics Series 55. For sale by the Superintendent of Documents, U.S. Government Printing Office, Washington, DC. Mathematical Reviews (MathSciNet): MR167642 Zentralblatt MATH: 0756.62031
-
(1964)
Handbook of Mathematical Functions With Formulas, Graphs, and Mathematical Tables. National Bureau of Standards Applied Mathematics Series
, vol.55
-
-
Abramowitz, M.1
Stegun, I.A.2
-
3
-
-
84873519035
-
An introduction to high-throughput bioinformatics data
-
(K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 1, Cambridge Univ. Press, Cambridge, Mathematical Reviews (MathSciNet): MR2269095
-
Baggerly, K. A., Coombes, K. R. and Morris, J. S. (2006). An introduction to high-throughput bioinformatics data. In Bayesian Inference for Gene Expression and Proteomics (K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 1, 1-39. Cambridge Univ. Press, Cambridge. Mathematical Reviews (MathSciNet): MR2269095
-
(2006)
Bayesian Inference For Gene Expression and Proteomics
, pp. 1-39
-
-
Baggerly, K.A.1
Coombes, K.R.2
Morris, J.S.3
-
4
-
-
1842559788
-
Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments
-
Zentralblatt MATH: 1185.92056
-
Baggerly, K. A., Morris, J. S. and Coombes, K. R. (2004). Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments. Bioinformatics 20 777-785. Zentralblatt MATH: 1185.92056
-
(2004)
Bioinformatics
, vol.20
, pp. 777-785
-
-
Baggerly, K.A.1
Morris, J.S.2
Coombes, K.R.3
-
5
-
-
0037379862
-
Protein expression profiling identifies MIF and Cyclophilin A as potential molecular targets in non-small cell lung cancer
-
Campa, M. J., Wang, M. Z., Howard, B. A., Fitzgerald, M. C. and Patz, E. F. Jr. (2003). Protein expression profiling identifies MIF and Cyclophilin A as potential molecular targets in non-small cell lung cancer. Cancer Research 63 1652-1656.
-
(2003)
Cancer Research
, vol.63
, pp. 1652-1656
-
-
Campa, M.J.1
Wang, M.Z.2
Howard, B.A.3
Fitzgerald, M.C.4
Patz Jr., E.F.5
-
6
-
-
73249139471
-
Bayesian function estimation using continuous wavelet dictionaries
-
Mathematical Reviews (MathSciNet): MR2589190 Zentralblatt MATH: 1191.62040
-
Chu, J.-H., Clyde, M. A. and Liang, F. (2009). Bayesian function estimation using continuous wavelet dictionaries. Statist. Sinica 19 1419-1438. Mathematical Reviews (MathSciNet): MR2589190 Zentralblatt MATH: 1191.62040
-
(2009)
Statist. Sinica
, vol.19
, pp. 1419-1438
-
-
Chu, J.-H.1
Clyde, M.A.2
Liang, F.3
-
7
-
-
34447568957
-
Nonparametric models for proteomic peak identification and quantification
-
(K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 15, Cambridge Univ. Press, Cambridge, Mathematical Reviews (MathSciNet): MR2269095
-
Clyde, M. A., House, L. L. and Wolpert, R. L. (2006). Nonparametric models for proteomic peak identification and quantification. In Bayesian Inference for Gene Expression and Proteomics (K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 15, 293-308. Cambridge Univ. Press, Cambridge. Mathematical Reviews (MathSciNet): MR2269095
-
(2006)
Bayesian Inference For Gene Expression and Proteomics
, pp. 293-308
-
-
Clyde, M.A.1
House, L.L.2
Wolpert, R.L.3
-
8
-
-
62749083340
-
Nonparametric function estimation using overcomplete dictionaries
-
J. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith and M. West, eds.), Oxford Univ. Press, Oxford, Mathematical Reviews (MathSciNet): MR2433190 Zentralblatt MATH: 1252.62035
-
Clyde, M. A. and Wolpert, R. L. (2007). Nonparametric function estimation using overcomplete dictionaries. In Bayesian Statistics 8 (J. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith and M. West, eds.) 91-114. Oxford Univ. Press, Oxford. Mathematical Reviews (MathSciNet): MR2433190 Zentralblatt MATH: 1252.62035
-
(2007)
Bayesian Statistics 8
, pp. 91-114
-
-
Clyde, M.A.1
Wolpert, R.L.2
-
9
-
-
18744410496
-
Understanding the characteristics of mass spectrometry data through the use of simulation
-
Coombes, K. R., Koomen, J. M., Baggerly, K. A., Morris, J. S. and Kobayashi, R. (2005a). Understanding the characteristics of mass spectrometry data through the use of simulation. Cancer Informatics 1 41-52.
-
(2005)
Cancer Informatics
, vol.1
, pp. 41-52
-
-
Coombes, K.R.1
Koomen, J.M.2
Baggerly, K.A.3
Morris, J.S.4
Kobayashi, R.5
-
10
-
-
18744411077
-
Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
-
Coombes, K. R., Tsavachidis, S., Morris, J. S., Baggerly, K. A., Hung, M. C. and Kuerer, H. M. (2005b). Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics 5 4107-4117.
-
(2005)
Proteomics
, vol.5
, pp. 4107-4117
-
-
Coombes, K.R.1
Tsavachidis, S.2
Morris, J.S.3
Baggerly, K.A.4
Hung, M.C.5
Kuerer, H.M.6
-
11
-
-
84873505547
-
-
Cromwell, M. D. Anderson Cancer Center, Houston, TX. Available at
-
Cromwell (2004). Cromwell MatLab package. M. D. Anderson Cancer Center, Houston, TX. Available at http://bioinformatics.mdanderson.org/cromwell.html.
-
(2004)
Cromwell MatLab Package
-
-
-
13
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
With discussion. Mathematical Reviews (MathSciNet): MR501537
-
Dempster, A. P., Laird, N. M. and Rubin, D. B. (1977). Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Statist. Soc. Ser. B 39 1-38. With discussion. Mathematical Reviews (MathSciNet): MR501537
-
(1977)
J. Roy. Statist. Soc. Ser
, vol.39
, pp. 1-38
-
-
Dempster, A.P.1
Laird, N.M.2
Rubin, D.B.3
-
15
-
-
77956889087
-
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
-
Mathematical Reviews (MathSciNet): MR1380810 Zentralblatt MATH: 0861.62023 Digital Object Identifier: doi:10.1093/biomet/82.4.711
-
Green, P. J. (1995). Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika 82 711-732. Mathematical Reviews (MathSciNet): MR1380810 Zentralblatt MATH: 0861.62023 Digital Object Identifier: doi:10.1093/biomet/82.4.711
-
(1995)
Biometrika
, vol.82
, pp. 711-732
-
-
Green, P.J.1
-
16
-
-
78649660634
-
-
(K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 12, Cambridge Univ. Press, Cambridge, Mathematical Reviews (MathSciNet): MR2269095
-
Guindani, M., Do, K. A., Müller, P. and Morris, J. S. (2006). Bayesian mixture models for gene expression and protein profiles. (K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 12, 238-253. Cambridge Univ. Press, Cambridge. Mathematical Reviews (MathSciNet): MR2269095
-
(2006)
Bayesian Mixture Models For Gene Expression and Protein Profiles
, pp. 238-253
-
-
Guindani, M.1
Do, K.A.2
Müller, P.3
Morris, J.S.4
-
17
-
-
38649132568
-
Biomarker discovery for Arsenic exposure using functional data analysis and feature learning of mass spectrometry proteomic data
-
Harezlak, J., Wu, M., Wang, M., Schwartzman, A., Christian, D. and Lin, X. (2008). Biomarker discovery for Arsenic exposure using functional data analysis and feature learning of mass spectrometry proteomic data. Journal of Proteome Research 7 217-224.
-
(2008)
Journal of Proteome Research
, vol.7
, pp. 217-224
-
-
Harezlak, J.1
Wu, M.2
Wang, M.3
Schwartzman, A.4
Christian, D.5
Lin, X.6
-
20
-
-
18444410406
-
Empirical Bayes selection of wavelet thresholds
-
Mathematical Reviews (MathSciNet): MR2166560 Zentralblatt MATH: 1078.62005 Digital Object Identifier: doi:10.1214/009053605000000345 Project Euclid: euclid.aos/1123250227
-
Johnstone, I. M. and Silverman, B. W. (2005). Empirical Bayes selection of wavelet thresholds. Ann. Statist. 33 1700-1752. Mathematical Reviews (MathSciNet): MR2166560 Zentralblatt MATH: 1078.62005 Digital Object Identifier: doi:10.1214/009053605000000345 Project Euclid: euclid.aos/1123250227
-
(2005)
Ann. Statist
, vol.33
, pp. 1700-1752
-
-
Johnstone, I.M.1
Silverman, B.W.2
-
21
-
-
2542537695
-
Improved method for peak picking in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Kempka, M., Södahl, J., Björk, A. and Roeraade, J. (2004). Improved method for peak picking in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry 18 1208-1212.
-
(2004)
Rapid Communications In Mass Spectrometry
, vol.18
, pp. 1208-1212
-
-
Kempka, M.1
Södahl, J.2
Björk, A.3
Roeraade, J.4
-
22
-
-
79953131923
-
-
R Package Version 1.24.0. Available at
-
Li, X. (2005). PROcess: Ciphergen SELDI-TOF Processing. R Package Version 1.24.0. Available at http://www.bioconductor.org/help/bioc-views/2.6/bioc/html/PROcess.html.
-
(2005)
PROcess: Ciphergen SELDI-TOF Processing
-
-
Li, X.1
-
23
-
-
19944362482
-
Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-flight mass spectrometric records for serum peptides using time-series analysis techniques
-
Malyarenko, D. I., Cooke, W. E., Adam, B.-L., Malik, G., Chen, H., Tracy, E. R., Trosset, M. W., Sasinowski, M., Semmes, O. J. and Manos, D. M. (2005). Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-flight mass spectrometric records for serum peptides using time-series analysis techniques. Clin. Chem. 51 65-74.
-
(2005)
Clin. Chem
, vol.51
, pp. 65-74
-
-
Malyarenko, D.I.1
Cooke, W.E.2
Adam, B.-L.3
Malik, G.4
Chen, H.5
Tracy, E.R.6
Trosset, M.W.7
Sasinowski, M.8
Semmes, O.J.9
Manos, D.M.10
-
24
-
-
18744384734
-
Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
-
Morris, J. S., Coombes, K. R., Koomen, J., Baggerly, K. A. and Kobayashi, R. (2005). Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. Bioinformatics 21 1764-1775.
-
(2005)
Bioinformatics
, vol.21
, pp. 1764-1775
-
-
Morris, J.S.1
Coombes, K.R.2
Koomen, J.3
Baggerly, K.A.4
Kobayashi, R.5
-
25
-
-
34447562371
-
Analysis of mass spectrometry data using Bayesian wavelet-based functional mixed models
-
(K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 14, Cambridge Univ. Press, Cambridge, Mathematical Reviews (MathSciNet): MR2269095 Zentralblatt MATH: 1223.62012
-
Morris, J. S., Brown, P. J., Baggerly, K. A. and Coombes, K. R. (2006). Analysis of mass spectrometry data using Bayesian wavelet-based functional mixed models. In Bayesian Inference for Gene Expression and Proteomics (K.-A. Do, P. Müller and M. Vannucci, eds.) Chapter 14, 269-292. Cambridge Univ. Press, Cambridge. Mathematical Reviews (MathSciNet): MR2269095 Zentralblatt MATH: 1223.62012
-
(2006)
Bayesian Inference For Gene Expression and Proteomics
, pp. 269-292
-
-
Morris, J.S.1
Brown, P.J.2
Baggerly, K.A.3
Coombes, K.R.4
-
26
-
-
43949121435
-
Bayesian analysis of mass spectrometry proteomic data using wavelet-based functional mixed models
-
Mathematical Reviews (MathSciNet): MR2432418 Digital Object Identifier: doi:10.1111/j.1541-0420.2007.00895.x
-
Morris, J. S., Brown, P. J., Herrick, R. C., Baggerly, K. A. and Coombes, K. R. (2008). Bayesian analysis of mass spectrometry proteomic data using wavelet-based functional mixed models. Biometrics 64 479-489, 667. Mathematical Reviews (MathSciNet): MR2432418 Digital Object Identifier: doi:10.1111/j.1541-0420.2007.00895.x
-
(2008)
Biometrics
, vol.64
-
-
Morris, J.S.1
Brown, P.J.2
Herrick, R.C.3
Baggerly, K.A.4
Coombes, K.R.5
-
27
-
-
84873507477
-
A Bayesian mixture model for protein biomarker discovery
-
D. K. Dey, S. Ghosh and B. K. Mallick, eds.). Chapman & Hall/CRC Press, Boca Raton, FL
-
Müller, P., Baggerly, K. A., Do, K.-A. and Bandyopadhyay, R. (2010). A Bayesian mixture model for protein biomarker discovery. In Bayesian Modeling in Bioinformatics (D. K. Dey, S. Ghosh and B. K. Mallick, eds.). Chapman & Hall/CRC Press, Boca Raton, FL.
-
(2010)
Bayesian Modeling In Bioinformatics
-
-
Müller, P.1
Baggerly, K.A.2
Do, K.-A.3
Bandyopadhyay, R.4
-
28
-
-
77956521596
-
Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet
-
Nguyen, N., Huang, H., Oraintara, S. and Vo, A. (2010). Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet. Bioinformatics 26 i659-i665.
-
(2010)
Bioinformatics
, vol.26
-
-
Nguyen, N.1
Huang, H.2
Oraintara, S.3
Vo, A.4
-
29
-
-
79951480123
-
-
Development Core Team, R Foundation for Statistical Computing, Vienna
-
R Development Core Team (2010). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.
-
(2010)
R: A Language and Environment For Statistical Computing
-
-
-
31
-
-
10244279272
-
Sample classification from protein mass spectrometry, by 'peak probability contrasts'
-
Tibshirani, R., Hastie, T., Narasimhan, B., Soltys, S., Shi, G., Koong, A. and Le, Q.-T. (2004). Sample classification from protein mass spectrometry, by 'peak probability contrasts'. Bioinformatics 20 3034-3044.
-
(2004)
Bioinformatics
, vol.20
, pp. 3034-3044
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Soltys, S.4
Shi, G.5
Koong, A.6
Le, Q.-T.7
-
32
-
-
0004246623
-
-
Wiley, New York, Mathematical Reviews (MathSciNet): MR1681904 Zentralblatt MATH: 0924.62032
-
Vidakovic, B. (1999). Statistical Modeling by Wavelets. Wiley, New York. Mathematical Reviews (MathSciNet): MR1681904 Zentralblatt MATH: 0924.62032
-
(1999)
Statistical Modeling By Wavelets
-
-
Vidakovic, B.1
-
34
-
-
35348897501
-
Bayesian curve classification using wavelets
-
Mathematical Reviews (MathSciNet): MR2354408 Zentralblatt MATH: 05564424 Digital Object Identifier: doi:10.1198/016214507000000455
-
Wang, X., Ray, S. and Mallick, B. K. (2007). Bayesian curve classification using wavelets. J. Amer. Statist. Assoc. 102 962-973. Mathematical Reviews (MathSciNet): MR2354408 Zentralblatt MATH: 05564424 Digital Object Identifier: doi:10.1198/016214507000000455
-
(2007)
J. Amer. Statist. Assoc
, vol.102
, pp. 962-973
-
-
Wang, X.1
Ray, S.2
Mallick, B.K.3
-
35
-
-
0141520592
-
Analysis of human serum proteins by liquid phase iso-electric focusing and matrix-assisted laser desorption/ionization mass spectrometry
-
Wang, M. Z., Howard, B. A., Campa, M. J., Patz, E. F. Jr. and Fitzgerald, M. C. (2003). Analysis of human serum proteins by liquid phase iso-electric focusing and matrix-assisted laser desorption/ionization mass spectrometry. Proteomics 3 1661-1666.
-
(2003)
Proteomics
, vol.3
, pp. 1661-1666
-
-
Wang, M.Z.1
Howard, B.A.2
Campa, M.J.3
Patz Jr., E.F.4
Fitzgerald, M.C.5
-
36
-
-
80052832466
-
Stochastic expansions using continuous dictionaries: Lévy adaptive regression kernels
-
To appear, Mathematical Reviews (MathSciNet): MR2893857 Digital Object Identifier: doi:10.1214/11-AOS889 Project Euclid: euclid.aos/1314190619
-
Wolpert, R. L., Clyde, M. A. and Tu, C. (2011). Stochastic expansions using continuous dictionaries: Lévy adaptive regression kernels. Ann. Statist. To appear. Mathematical Reviews (MathSciNet): MR2893857 Digital Object Identifier: doi:10.1214/11-AOS889 Project Euclid: euclid.aos/1314190619
-
(2011)
Ann. Statist
-
-
Wolpert, R.L.1
Clyde, M.A.2
Tu, C.3
-
37
-
-
10844257519
-
Reflecting uncertainty in inverse problems: A Bayesian solution using Lévy processes
-
Mathematical Reviews (MathSciNet): MR2107235 Digital Object Identifier: doi:10.1088/0266-5611/20/6/004
-
Wolpert, R. L. and Ickstadt, K. (2004). Reflecting uncertainty in inverse problems: A Bayesian solution using Lévy processes. Inverse Problems 20 1759-1771. Mathematical Reviews (MathSciNet): MR2107235 Digital Object Identifier: doi:10.1088/0266-5611/20/6/004
-
(2004)
Inverse Problems
, vol.20
, pp. 1759-1771
-
-
Wolpert, R.L.1
Ickstadt, K.2
-
38
-
-
0346101457
-
An automated peak identification/calibration procedure for high-dimensional protein measures from mass spectrometers
-
Yasui, Y., McLerran, D., Adam, B.-L., Winget, M., Thornquist, M. and Feng, Z. (2003). An automated peak identification/calibration procedure for high-dimensional protein measures from mass spectrometers. J. Biomed. Biotechnol. 2003 242-248.
-
(2003)
J. Biomed. Biotechnol
, vol.2003
, pp. 242-248
-
-
Yasui, Y.1
McLerran, D.2
Adam, B.-L.3
Winget, M.4
Thornquist, M.5
Feng, Z.6
-
39
-
-
0031688878
-
Velocity distributions of analyte molecules in matrix assisted laser desorption from computer simulations
-
Zhigilei, L. V. and Garrison, B. J. (1998). Velocity distributions of analyte molecules in matrix assisted laser desorption from computer simulations. Rapid Communications in Mass Spectrometry 12 1273-1277.
-
(1998)
Rapid Communications In Mass Spectrometry
, vol.12
, pp. 1273-1277
-
-
Zhigilei, L.V.1
Garrison, B.J.2
|