Retraction: Identification of a novel jasmonate-responsive element in the AtJMT promoter and its binding protein for AtJMT repression (PLoS ONE (2013) 8: 2 (e55482) DOI: 10.1371/journal.pone.0055482);Identification of a Novel Jasmonate-Responsive Element in the AtJMT Promoter and Its Binding Protein for AtJMT Repression

PLoS ONE

Volumn 8, Issue 2, 2013, Pages

  Seo, Jun Sung ^a   Koo, Yeon Jong ^a   Jung, Choonkyun ^a   Yeu, Song Yion ^a   Song, Jong Tae ^b   Kim, Ju Kon ^c   Choi, Yeonhee ^d   Lee, Jong Seob ^d   Do Choi, Yang ^a  

^a Seoul National University   (South Korea)

^b Kyungpook National University   (South Korea)

^c Myong Ji University   (South Korea)

^d Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; JASMONATE RESPONSIVE CIS ELEMENT; JASMONIC ACID; JAZ1 PROTEIN; JAZ2 PROTEIN; MESSENGER RNA; PROTEIN BBD1; TRANS ACTING FACTOR; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; GENE DELETION; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE INACTIVATION; GENE LOCATION; GENE OVEREXPRESSION; GENE REPRESSION; GUS GENE; JASMONIC ACID CARBOXYL METHYLTRANSFERASE GENE; NONHUMAN; NTR1 GENE; PLANT GENE; PROMOTER REGION; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION;

EID: 84873498645     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0242041     Document Type: Erratum

References (63)

1. Howe GA, Jander G, (2008) Plant immunity to insect herbivores. Annu Rev Plant Biol 59: 41-66.
2. Browse J, (2009) Jasmonate passes muster: a receptor and targets for the defense hormone. Annu Rev Plant Biol 60: 183-205.
3. Koo AJ, Howe GA, (2009) The wound hormone jasmonate. Phytochemistry 70: 1571-1580.
4. Wasternack C, (2007) Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Annals of Botany 100: 681-697.
5. Pauwels L, Morreel K, De Witte E, Lammertyn F, Van Montagu M, et al. (2008) Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells. Proc Natl Acad Sci U S A 105: 1380-1385.
6. Chini A, Fonseca S, Fernández G, Adie B, Chico JM, et al. (2007) The JAZ family of repressors is the missing link in jasmonate signalling. Nature 448: 666-671.
7. Thines B, Katsir L, Melotto M, Niu Y, Mandaokar A, et al. (2007) JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature 448: 661-665.
8. Pauwels L, Barbero GF, Geerinck J, Tilleman S, Grunewald W, et al. (2010) NINJA connects the co-repressor TOPLESS to jasmonate signalling. Nature 464: 788-791.
9. Arabidopsis Interactome Mapping Consortium, (2011) Evidence for network evolution in an Arabidopsis interactome map. Science 333: 601-607.
10. Zhu Z, An F, Feng Y, Li P, Xue L, et al. (2011) Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis. Proc Natl Acad Sci U S A 108: 12539-12544.
11. Staswick PE, Tiryaki I, Rowe ML, (2002) Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation. Plant Cell 14: 1405-1415.
12. Staswick PE, Tiryaki I, (2004) The oxylipin signal jasmonic acid is activated by an enzyme that conjugates it to isoleucine in Arabidopsis. Plant Cell 16: 2117-2127.
13. Krogan NT, Long JA, (2009) Why so repressed? Turning off transcription during plant growth and development Curr Opin Plant Biol 12: 628-636.
14. Howe GA, (2010) Ubiquitin Ligase-Coupled Receptors Extend Their Reach to Jasmonate. Plant Physiol 154: 471-474.
15. Boter M, Ruíz-Rivero O, Abdeen A, Prat S, (2004) Conserved MYC transcription factors play a key role in jasmonate signaling both in tomato and Arabidopsis. Genes Dev 18: 1577-1591.
16. Lorenzo O, Chico JM, Sanchez-Serrano JJ, Solano R, (2004) JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis. Plant Cell 16: 1938-1950.
17. Dombrecht B, Xue GP, Sprague SJ, Kirkegaard JA, Ross JJ, et al. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19: 2225-2245.
18. Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico JM, Gimenez-Ibanez S, et al. (2011) The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. Plant Cell 23: 701-715.
19. Qi T, Song S, Ren Q, Wu D, Huang H, et al. (2011) The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant Cell 23: 1795-1814.
20. Song S, Qi T, Huang H, Ren Q, Wu D, (2011) The Jasmonate-ZIM domain proteins interact with the R2R3-MYB transcription factors MYB21 and MYB24 to affect jasmonate-regulated stamen development in Arabidopsis. Plant Cell 23: 1000-1013.
21. Pauwels L, Goossens A, (2011) The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade. Plant Cell 23: 3089-3100.
22. Kazan K, Manners JM, (2012) JAZ repressors and the orchestration of phytohormone crosstalk. Trends Plant Sci 17: 22-31.
23. Kim SR, Choi JL, Costa MA, An G, (1992) Identification of G-box sequence as an essential element for methyl jasmonate response of potato proteinase inhibitor II promoter. Plant Physiol 99: 627-631.
24. Mason HS, Dewald DB, Mullet JE, (1993) Identification of a methyl jasmonateresponsive domain in the soybean vspB promoter. Plant Cell 5: 241-251.
25. Guerineau F, Benjdia M, Zhou DX, (2003) A jasmonate-responsive element within the A. thaliana vsp1 promoter. J Exp Bot 54: 1153-1162.
26. Vom Endt D, Soares e Silva M, Kijne JW, Pasquali G, Memelink J, (2007) Identification of a bipartite jasmonate-responsive promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-hook DNA-binding proteins. Plant Physiol 144: 1680-1689.
27. Brown RL, Kazan K, McGrath KC, Maclean DJ, Manners JM, (2003) A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol 132: 1020-1032.
28. Xu B, Timko M, (2004) Methyl jasmonate induced expression of the tobacco putrescine N-methyltransferase genes requires both G-box and GCC-motif elements. Plant Mol Biol 55: 743-761.
29. Menke FLH, Champion A, Kijne JW, Memelink J, (1999) A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, ORCA2. EMBO J 18: 4455-4463.
30. Rouster J, Leah R, Mundy J, Cameron-Mills V, (1997) Identification of a methyl jasmonate-responsive region in the promoter of a lipoxygenase 1 gene expressed in barley grain. Plant J 11: 513-523.
31. He Y, Gan S, (2001) Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis. Plant Mol Biol 47: 595-605.
32. Adie BA, Perez-Perez J, Perez-Perez MM, Godoy M, Sanchez-Serrano JJ, et al. (2007) ABA is an essential signal for plant resistance to pathogens sffecting JA biosynthesis and the activation of defenses in Arabidopsis. Plant Cell 19: 1665-1681.
33. Yamamoto YY, Yoshioka Y, Hyakumachi M, Maruyama K, Yamaguchi-Shinozaki K, et al. (2011) Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data. BMC Plant Biol 11: 39.
34. Strahl BD, Allis CD, (2000) The language of covalent histone modifications. Nature 403: 41-45.
35. Chen ZJ, Tian L, (2007) Roles of dynamic and reversible histone acetylation in plant development and polyploidy. Biochim Biophys Acta 1769: 295-307.
36. Hebbes TR, Thorne AW, Crane-Robinson C, (1988) Adirect link between core histone acetylation and transcriptionally active chromatin. EMBO J 7: 1395-1402.
37. Chua YL, Watson LA, Gray JC, (2003) The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation. Plant Cell 15: 1468-1479.
38. Utley RT, Ikeda K, Grant PA, Cote J, Steger DJ, Eberharter A, John S, Workman JL, (1998) Transcriptional activators direct histone acetyltransferase complexes to nucleosomes. Nature 394: 498-502.
39. Kagale S, Rozwadowski K, (2011) EAR motif-mediated transcriptional repression in plants. Epigenetics 6: 141-146.
40. Zhou C, Zhang L, Duan J, Miki B, Wu K, (2005) HISTONE DEACETYLASE19 is involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis. Plant Cell 17: 1196-1204.
41. Wu K, Zhang L, Zhou C, Yu CW, Chaikam V, (2008) HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis. J Exp Bot 59: 225-234.
42. Seo HS, Song JT, Cheong JJ, Lee YH, Lee YW, et al. (2001a) Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonateregulated plant responses. Proc Natl Acad Sci U S A 98: 4788-4793.
43. Seo HS, Song JT, Koo YJ, Jung C, Yeu SY, (2001b) Floral nectarty-specific gene NTR1 encodes a jasmonic acid carboxyl methyltransferase. Agric Chem Biotechnol 44: 119-124.
44. Song JT, Seo HS, Song SI, Lee JS, Choi YD, (2000) NTR1 encodes a floral nectary-specific gene in Brassica campestris L. ssp. pekinensis. Plant Mol Biol 42: 647-55.
45. Clough SJ, Bent AF, (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
46. Seo JS, Joo J, Kim MJ, Kim YK, Nahm BH, et al. (2011) OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice. Plant J 65: 907-21.
47. Voinnet O, Rivas S, Mestre P, Baulcombe D, (2003) An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J. 33: 949-956.
48. Saleh A, Alvarez-Venegas R, Avramova Z, (2008) An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants. Nature Protocols 3: 1018-1025.
49. Johnson L, Cao X, Jacobsen S, (2002) Interplay between two epigenetic marks. DNA methylation and hitone H3 lysine 9 methylation. Curr Biol 12: 1360-1367.
50. You MK, Shin HY, Kim YJ, Ok SH, Cho SK, et al. (2010) Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in abscisic acid-mediated callose deposition in Arabidopsis. Plant Physiol 152: 1015-29.
51. Memelink J, (2009) Regulation of gene expression by jasmonate hormones. Phytochemistry 70: 1560-1570.
52. Ohme-Takagi M, Shinshi H, (1995) Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 7: 173-182.
53. Kim SR, Kim Y, An G, (1993) Identification of methyl jasmonate and salicylic acid response elements from the nopaline synthase (nos) promoter. Plant Physiol 103: 97-103.
54. Kim Y, Buckley K, Costa MA, An G, (1994) A 20 nucleotide upstream element is essential for the nopaline synthase (nos) promoter activity. Plant Mol Biol 24: 105-117.
55. Stitz M, Gase K, Baldwin IT, Gaquerel E, (2011) Ectopic expression of AtJMT in Nicotiana attenuata: creating a metabolic sink has tissue-specific consequences for the jasmonate metabolic network and silences downstream gene expression. Plant Physiol 157: 341-54.
56. Eferl R, Wagner EF, (2003) AP-1: a double-edged sword in tumorigenesis. Nat Rev Cancer 3: 859-868.
57. Ikeda M, Mitsuda N, Ohme-Takagi M, (2009) Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. Plant Cell 21: 3493-505.
58. Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M, (2000) Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell 12: 393-404.
59. Guilfoyle TJ, Hagen G, (2007) Auxin response factors. Curr Opin Plant Biol 10: 453-460.
60. Tiwari SB, Hagen G, Guilfoyle T, (2003) The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15: 533-543.
61. Yang Z, Tian L, Latoszek-Green M, Brown D, Wu K, (2005) Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Mol Biol 58: 585-596.
62. Ohta M, Matsui K, Hiratsu K, Shinshi H, Ohme-Takagi M, (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13: 1959-1968.
63. Chapman EJ, Estelle M, (2009) Mechanism of auxin-regulated gene expression in plants. Annu. Rev. Genet. 43: 265-285.