메뉴 건너뛰기




Volumn 87, Issue 4, 2013, Pages 707-712

Statistical analyses of protein sequence alignments identify structures and mechanisms in signal activation of sensor histidine kinases

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN HISTIDINE KINASE;

EID: 84873424808     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/mmi.12128     Document Type: Article
Times cited : (13)

References (35)
  • 2
    • 0023660022 scopus 로고
    • Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus
    • Altschuh, D., Lesk, A.M., Bloomer, A.C., and Klug, A. (1987) Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus. J Mol Biol 193: 693-707.
    • (1987) J Mol Biol , vol.193 , pp. 693-707
    • Altschuh, D.1    Lesk, A.M.2    Bloomer, A.C.3    Klug, A.4
  • 3
    • 80053302096 scopus 로고    scopus 로고
    • Determinants of homodimerization specificity in histidine kinases
    • Ashenberg, O., Rozen-Gagnon, K., Laub, M.T., and Keating, A.E. (2011) Determinants of homodimerization specificity in histidine kinases. J Mol Biol 413: 222-235.
    • (2011) J Mol Biol , vol.413 , pp. 222-235
    • Ashenberg, O.1    Rozen-Gagnon, K.2    Laub, M.T.3    Keating, A.E.4
  • 4
    • 0033977832 scopus 로고    scopus 로고
    • Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis
    • Atchley, W.R., Wollenberg, K.R., Fitch, W.M., Terhalle, W., and Dress, A.W. (2000) Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis. Mol Biol Evol 17: 164-178.
    • (2000) Mol Biol Evol , vol.17 , pp. 164-178
    • Atchley, W.R.1    Wollenberg, K.R.2    Fitch, W.M.3    Terhalle, W.4    Dress, A.W.5
  • 6
    • 39149114704 scopus 로고    scopus 로고
    • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    • Burger, L., and van Nimwegen, E. (2008) Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method. Mol Syst Biol 4: 165.
    • (2008) Mol Syst Biol , vol.4 , pp. 165
    • Burger, L.1    van Nimwegen, E.2
  • 7
    • 70349795241 scopus 로고    scopus 로고
    • Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction
    • Casino, P., Rubio, V., and Marina, A. (2009) Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction. Cell 139: 325-336.
    • (2009) Cell , vol.139 , pp. 325-336
    • Casino, P.1    Rubio, V.2    Marina, A.3
  • 8
    • 84863006375 scopus 로고    scopus 로고
    • Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis
    • Dago, A.E., Schug, A., Procaccini, A., Hoch, J.A., Weigt, M., and Szurmant, H. (2012) Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. Proc Natl Acad Sci USA 109: E1733-E1742.
    • (2012) Proc Natl Acad Sci USA , vol.109
    • Dago, A.E.1    Schug, A.2    Procaccini, A.3    Hoch, J.A.4    Weigt, M.5    Szurmant, H.6
  • 9
    • 70349541000 scopus 로고    scopus 로고
    • Biological insights from structures of two-component proteins
    • Gao, R., and Stock, A.M. (2009) Biological insights from structures of two-component proteins. Annu Rev Microbiol 63: 133-154.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 133-154
    • Gao, R.1    Stock, A.M.2
  • 10
    • 0028295169 scopus 로고
    • Correlated mutations and residue contacts in proteins
    • Göbel, U., Sander, C., Schneider, R., and Valencia, A. (1994) Correlated mutations and residue contacts in proteins. Proteins 18: 309-317.
    • (1994) Proteins , vol.18 , pp. 309-317
    • Göbel, U.1    Sander, C.2    Schneider, R.3    Valencia, A.4
  • 11
    • 84862647180 scopus 로고    scopus 로고
    • Three-dimensional structures of membrane proteins from genomic sequencing
    • Hopf, T.A., Colwell, L.J., Sheridan, R., Rost, B., Sander, C., and Marks, D.S. (2012) Three-dimensional structures of membrane proteins from genomic sequencing. Cell 149: 1607-1621.
    • (2012) Cell , vol.149 , pp. 1607-1621
    • Hopf, T.A.1    Colwell, L.J.2    Sheridan, R.3    Rost, B.4    Sander, C.5    Marks, D.S.6
  • 12
    • 0033536602 scopus 로고    scopus 로고
    • Evolutionarily conserved pathways of energetic connectivity in protein families
    • Lockless, S.W., and Ranganathan, R. (1999) Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286: 295-299.
    • (1999) Science , vol.286 , pp. 295-299
    • Lockless, S.W.1    Ranganathan, R.2
  • 15
    • 29244433095 scopus 로고    scopus 로고
    • Structure of the entire cytoplasmic portion of a sensor histidine-kinase protein
    • Marina, A., Waldburger, C.D., and Hendrickson, W.A. (2005) Structure of the entire cytoplasmic portion of a sensor histidine-kinase protein. EMBO J 24: 4247-4259.
    • (2005) EMBO J , vol.24 , pp. 4247-4259
    • Marina, A.1    Waldburger, C.D.2    Hendrickson, W.A.3
  • 17
    • 83755178457 scopus 로고    scopus 로고
    • Direct-coupling analysis of residue coevolution captures native contacts across many protein families
    • Morcos, F., Pagnani, A., Lunt, B., Bertolino, A., Marks, D.S., Sander, C., etal. (2011) Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc Natl Acad Sci USA 108: E1293-E1301.
    • (2011) Proc Natl Acad Sci USA , vol.108
    • Morcos, F.1    Pagnani, A.2    Lunt, B.3    Bertolino, A.4    Marks, D.S.5    Sander, C.6
  • 18
    • 84862192588 scopus 로고    scopus 로고
    • Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis
    • Nugent, T., and Jones, D.T. (2012) Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis. Proc Natl Acad Sci USA 109: E1540-E1457.
    • (2012) Proc Natl Acad Sci USA , vol.109
    • Nugent, T.1    Jones, D.T.2
  • 19
    • 79955792165 scopus 로고    scopus 로고
    • Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks
    • Procaccini, A., Lunt, B., Szurmant, H., Hwa, T., and Weigt, M. (2011) Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks. PLoS ONE 6: e19729.
    • (2011) PLoS ONE , vol.6
    • Procaccini, A.1    Lunt, B.2    Szurmant, H.3    Hwa, T.4    Weigt, M.5
  • 20
    • 76049105937 scopus 로고    scopus 로고
    • High resolution protein complexes from integrating genomic information with molecular simulation
    • Schug, A., Weigt, M., Onuchic, J.N., Hwa, T., and Szurmant, H. (2009) High resolution protein complexes from integrating genomic information with molecular simulation. Proc Natl Acad Sci USA 106: 22124-22129.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 22124-22129
    • Schug, A.1    Weigt, M.2    Onuchic, J.N.3    Hwa, T.4    Szurmant, H.5
  • 21
    • 77949913363 scopus 로고    scopus 로고
    • Computational modeling of phosphotransfer complexes in two-component signaling
    • Schug, A., Weigt, M., Hoch, J.A., Onuchic, J.N., Hwa, T., and Szurmant, H. (2010) Computational modeling of phosphotransfer complexes in two-component signaling. Methods Enzymol 471: 43-58.
    • (2010) Methods Enzymol , vol.471 , pp. 43-58
    • Schug, A.1    Weigt, M.2    Hoch, J.A.3    Onuchic, J.N.4    Hwa, T.5    Szurmant, H.6
  • 23
    • 77949916535 scopus 로고    scopus 로고
    • Protein histidine kinases: assembly of active sites and their regulation in signaling pathways
    • Stewart, R.C. (2010) Protein histidine kinases: assembly of active sites and their regulation in signaling pathways. Curr Opin Microbiol 13: 133-141.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 133-141
    • Stewart, R.C.1
  • 24
    • 0037219686 scopus 로고    scopus 로고
    • Evolutionarily conserved networks of residues mediate allosteric communication in proteins
    • Suel, G.M., Lockless, S.W., Wall, M.A., and Ranganathan, R. (2003) Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nat Struct Biol 10: 59-69.
    • (2003) Nat Struct Biol , vol.10 , pp. 59-69
    • Suel, G.M.1    Lockless, S.W.2    Wall, M.A.3    Ranganathan, R.4
  • 26
    • 84873427301 scopus 로고    scopus 로고
    • Genetic covariance
    • Maloy, S., and Hughes, K. (eds). Waltham: Academic Press (in press).
    • Szurmant, H., and Weigt, M. (2012) Genetic covariance. In Brenner's Encyclopedia of Genetics. Maloy, S., and Hughes, K. (eds). Waltham: Academic Press (in press).
    • (2012) Brenner's Encyclopedia of Genetics
    • Szurmant, H.1    Weigt, M.2
  • 27
    • 36549003158 scopus 로고    scopus 로고
    • Sensor complexes regulating two-component signal transduction
    • Szurmant, H., White, R.A., and Hoch, J.A. (2007) Sensor complexes regulating two-component signal transduction. Curr Opin Struct Biol 17: 706-715.
    • (2007) Curr Opin Struct Biol , vol.17 , pp. 706-715
    • Szurmant, H.1    White, R.A.2    Hoch, J.A.3
  • 28
    • 48249148736 scopus 로고    scopus 로고
    • Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis
    • Szurmant, H., Bobay, B.G., White, R.A., Sullivan, D.M., Thompson, R.J., Hwa, T., etal. (2008) Co-evolving motions at protein-protein interfaces of two-component signaling systems identified by covariance analysis. Biochemistry 47: 7782-7784.
    • (2008) Biochemistry , vol.47 , pp. 7782-7784
    • Szurmant, H.1    Bobay, B.G.2    White, R.A.3    Sullivan, D.M.4    Thompson, R.J.5    Hwa, T.6
  • 29
    • 28844432653 scopus 로고    scopus 로고
    • A common dimerization interface in bacterial response regulators KdpE and TorR
    • Toro-Roman, A., Wu, T., and Stock, A.M. (2005) A common dimerization interface in bacterial response regulators KdpE and TorR. Protein Sci 14: 3077-3088.
    • (2005) Protein Sci , vol.14 , pp. 3077-3088
    • Toro-Roman, A.1    Wu, T.2    Stock, A.M.3
  • 30
    • 77955296275 scopus 로고    scopus 로고
    • Structural and enzymatic insights into the ATP binding and autophosphorylation mechanism of a sensor histidine kinase
    • Trajtenberg, F., Grana, M., Ruetalo, N., Botti, H., and Buschiazzo, A. (2010) Structural and enzymatic insights into the ATP binding and autophosphorylation mechanism of a sensor histidine kinase. J Biol Chem 285: 24892-24903.
    • (2010) J Biol Chem , vol.285 , pp. 24892-24903
    • Trajtenberg, F.1    Grana, M.2    Ruetalo, N.3    Botti, H.4    Buschiazzo, A.5
  • 31
    • 84858294281 scopus 로고    scopus 로고
    • Ligand and antagonist driven regulation of the Vibrio cholerae quorum-sensing receptor CqsS
    • Wei, Y., Ng, W.L., Cong, J., and Bassler, B.L. (2012) Ligand and antagonist driven regulation of the Vibrio cholerae quorum-sensing receptor CqsS. Mol Microbiol 83: 1095-1108.
    • (2012) Mol Microbiol , vol.83 , pp. 1095-1108
    • Wei, Y.1    Ng, W.L.2    Cong, J.3    Bassler, B.L.4
  • 32
    • 58549114185 scopus 로고    scopus 로고
    • Identification of direct residue contacts in protein-protein interaction by message passing
    • Weigt, M., White, R.A., Szurmant, H., Hoch, J.A., and Hwa, T. (2009) Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci USA 106: 67-72.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 67-72
    • Weigt, M.1    White, R.A.2    Szurmant, H.3    Hoch, J.A.4    Hwa, T.5
  • 33
    • 34447104524 scopus 로고    scopus 로고
    • Features of protein-protein interactions in two-component signaling deduced from genomic libraries
    • White, R.A., Szurmant, H., Hoch, J.A., and Hwa, T. (2007) Features of protein-protein interactions in two-component signaling deduced from genomic libraries. Methods Enzymol 422: 75-101.
    • (2007) Methods Enzymol , vol.422 , pp. 75-101
    • White, R.A.1    Szurmant, H.2    Hoch, J.A.3    Hwa, T.4
  • 34
    • 77949917076 scopus 로고    scopus 로고
    • Evolution and phyletic distribution of two-component signal transduction systems
    • Wuichet, K., Cantwell, B.J., and Zhulin, I.B. (2010) Evolution and phyletic distribution of two-component signal transduction systems. Curr Opin Microbiol 13: 219-225.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 219-225
    • Wuichet, K.1    Cantwell, B.J.2    Zhulin, I.B.3
  • 35
    • 0034662751 scopus 로고    scopus 로고
    • A transient interaction between two phosphorelay proteins trapped in a crystal lattice reveals the mechanism of molecular recognition and phosphotransfer in signal transduction
    • Zapf, J., Sen, U., Madhusudan, Hoch, J.A., and Varughese, K.I. (2000) A transient interaction between two phosphorelay proteins trapped in a crystal lattice reveals the mechanism of molecular recognition and phosphotransfer in signal transduction. Structure 8: 851-862.
    • (2000) Structure , vol.8 , pp. 851-862
    • Zapf, J.1    Sen, U.2    Madhusudan Hoch, J.A.3    Varughese, K.I.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.