Correlated spatio-temporal fluctuations in chromatin compaction states characterize stem cells

Biophysical Journal

Volumn 104, Issue 3, 2013, Pages 553-564

  Talwar, Shefali ^a,b   Kumar, Abhishek ^a,b   Rao, Madan ^b,c   Menon, Gautam I ^a,d   Shivashankar, G V ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^c RAMAN RESEARCH INSTITUTE   (India)

^d INSTITUTE OF MATHEMATICAL SCIENCES   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIN; LAMIN;

ANIMAL; ARTICLE; CELL DIFFERENTIATION; CELL NUCLEUS; CHEMISTRY; CHROMATIN; CYTOLOGY; CYTOSKELETON; EMBRYONIC STEM CELL; FIBROBLAST; METABOLISM; MOUSE; ULTRASTRUCTURE;

ACTINS; ANIMALS; CELL DIFFERENTIATION; CELL NUCLEUS; CHROMATIN; CYTOSKELETON; EMBRYONIC STEM CELLS; FIBROBLASTS; LAMINS; MICE;

EID: 84873372317     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2012.12.033     Document Type: Article

References (34)

1. D.M. Cohen, and C.S. Chen Mechanical control of stem cell differentiation. StemBook [Internet] 2008 Harvard Stem Cell Institute Cambridge, MA
2. D.E. Discher, D.J. Mooney, and P.W. Zandstra Growth factors, matrices, and forces combine and control stem cells Science 324 2009 1673 1677
3. A.J. Engler, and S. Sen D.E. Discher Matrix elasticity directs stem cell lineage specification Cell 126 2006 677 689
4. K.A. Kilian, and B. Bugarija M. Mrksich Geometric cues for directing the differentiation of mesenchymal stem cells Proc. Natl. Acad. Sci. USA 107 2010 4872 4877
5. M. Yanagisawa, and N. Suzuki N. Shimizu Effects of compressive force on the differentiation of pluripotent mesenchymal cells Life Sci. 81 2007 405 412
6. P. Zhang, and J. Baxter P.J. Di Muzio Endothelial differentiation of amniotic fluid-derived stem cells: synergism of biochemical and shear force stimuli Stem Cells Dev. 18 2009 1299 1308
7. S. Efroni, and R. Duttagupta E. Meshorer Global transcription in pluripotent embryonic stem cells Cell Stem Cell 2 2008 437 447
8. M. Ramalho-Santos, and S. Yoon D.A. Melton "Stemness": transcriptional profiling of embryonic and adult stem cells Science 298 2002 597 600
9. H.H. Chang, and M. Hemberg S. Huang Transcriptome-wide noise controls lineage choice in mammalian progenitor cells Nature 453 2008 544 547
10. T. Graf, and M. Stadtfeld Heterogeneity of embryonic and adult stem cells Cell Stem Cell 3 2008 480 483
11. M. Hoffmann, and H.H. Chang J. Galle Noise-driven stem cell and progenitor population dynamics PLoS ONE 3 2008 e2922
12. C. Lanctôt, and T. Cheutin T. Cremer Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions Nat. Rev. Genet. 8 2007 104 115
13. B.E. Bernstein, and T.S. Mikkelsen E.S. Lander A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 125 2006 315 326
14. M. Spivakov, and A.G. Fisher Epigenetic signatures of stem-cell identity Nat. Rev. Genet. 8 2007 263 271
15. M.A. Surani, K. Hayashi, and P. Hajkova Genetic and epigenetic regulators of pluripotency Cell 128 2007 747 762
16. D. Bhattacharya, and S. Talwar G.V. Shivashankar Spatio-temporal plasticity in chromatin organization in mouse cell differentiation and during Drosophila embryogenesis Biophys. J. 96 2009 3832 3839
17. W.A. Bickmore, and K.S. Zaret Altered states: how gene expression is changed during differentiation Curr. Opin. Genet. Dev. 20 2010 467 469
18. A. Mattout, and E. Meshorer Chromatin plasticity and genome organization in pluripotent embryonic stem cells Curr. Opin. Cell Biol. 22 2010 334 341
19. E. Meshorer, and T. Misteli Chromatin in pluripotent embryonic stem cells and differentiation Nat. Rev. Mol. Cell Biol. 7 2006 540 546
20. E. Meshorer, and D. Yellajoshula T. Misteli Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells Dev. Cell 10 2006 105 116
21. F. Chowdhury, and S. Na N. Wang Material properties of the cell dictate stress-induced spreading and differentiation in embryonic stem cells Nat. Mater. 9 2010 82 88
22. J.D. Pajerowski, and K.N. Dahl D.E. Discher Physical plasticity of the nucleus in stem cell differentiation Proc. Natl. Acad. Sci. USA 104 2007 15619 15624
23. D. Constantinescu, and H.L. Gray A.B. Csoka Lamin A/C expression is a marker of mouse and human embryonic stem cell differentiation Stem Cells 24 2006 177 185
24. Y. Gruenbaum, and A. Margalit K.L. Wilson The nuclear lamina comes of age Nat. Rev. Mol. Cell Biol. 6 2005 21 31
25. A. Mazumder, and T. Roopa G.V. Shivashankar Prestressed nuclear organization in living cells Methods Cell Biol. 98 2010 221 239
26. A. Mazumder, and G.V. Shivashankar Emergence of a prestressed eukaryotic nucleus during cellular differentiation and development J. R. Soc. Interface 7 Suppl 3 2010 S321 S330
27. B. Banerjee, D. Bhattacharya, and G.V. Shivashankar Chromatin structure exhibits spatio-temporal heterogeneity within the cell nucleus Biophys. J. 91 2006 2297 2303
28. A. Mazumder, and G.V. Shivashankar Gold-nanoparticle-assisted laser perturbation of chromatin assembly reveals unusual aspects of nuclear architecture within living cells Biophys. J. 93 2007 2209 2216
29. A. Walker, and H. Su N. Sato Non-muscle myosin II regulates survival threshold of pluripotent stem cells Nat Commun 1 2010 1 9
30. D. Llères, and J. James A.I. Lamond Quantitative analysis of chromatin compaction in living cells using FLIM-FRET J. Cell Biol. 187 2009 481 496
31. C. Furusawa, and K. Kaneko A dynamical-systems view of stem cell biology Science 338 2012 215 217
32. B. Hampoelz, and Y. Azou-Gros T. Lecuit Microtubule-induced nuclear envelope fluctuations control chromatin dynamics in Drosophila embryos Development 138 2011 3377 3386
33. S. Melcer, and H. Hezroni E. Meshorer Histone modifications and lamin A regulate chromatin protein dynamics in early embryonic stem cell differentiation Nat Commun 3 2012 1 9
34. J.M. Slack Conrad Hal Waddington: the last Renaissance biologist? Nat. Rev. Genet. 3 2002 889 895