-
1
-
-
0037067616
-
Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control
-
Levy, Y. Y., Mesnage, S., Mylne, J. S., Gendall, A. R., and Dean, C. (2002) Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control. Science 297, 243-246
-
(2002)
Science
, vol.297
, pp. 243-246
-
-
Levy, Y.Y.1
Mesnage, S.2
Mylne, J.S.3
Gendall, A.R.4
Dean, C.5
-
2
-
-
0033133554
-
FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering
-
Michaels, S. D., and Amasino, R. M. (1999) FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 11, 949-956
-
(1999)
Plant Cell
, vol.11
, pp. 949-956
-
-
Michaels, S.D.1
Amasino, R.M.2
-
3
-
-
0033101487
-
The FLF MADS box gene: A repressor of flowering in Arabidopsis regulated by vernalization and methylation
-
Sheldon, C. C., Burn, J. E., Perez, P. P., Metzger, J., Edwards, J. A., Peacock, W. J., and Dennis, E. S. (1999) The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation. Plant Cell 11, 445-458
-
(1999)
Plant Cell
, vol.11
, pp. 445-458
-
-
Sheldon, C.C.1
Burn, J.E.2
Perez, P.P.3
Metzger, J.4
Edwards, J.A.5
Peacock, W.J.6
Dennis, E.S.7
-
4
-
-
33645522624
-
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC
-
Mylne, J. S., Barrett, L., Tessadori, F., Mesnage, S., Johnson, L., Bernatavichute, Y. V., Jacobsen, S. E., Fransz, P., and Dean, C. (2006) LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc. Natl. Acad. Sci. U. S. A. 103, 5012-5017
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 5012-5017
-
-
Mylne, J.S.1
Barrett, L.2
Tessadori, F.3
Mesnage, S.4
Johnson, L.5
Bernatavichute, Y.V.6
Jacobsen, S.E.7
Fransz, P.8
Dean, C.9
-
5
-
-
2642713363
-
The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA-binding activity
-
Suzuki, M., Kao, C. Y., and McCarty, D. R. (1997) The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA-binding activity. Plant Cell 9, 799-807
-
(1997)
Plant Cell
, vol.9
, pp. 799-807
-
-
Suzuki, M.1
Kao, C.Y.2
McCarty, D.R.3
-
6
-
-
84858291218
-
NMRassignment and secondary structure of the C-terminal DNA binding domain of Arabidopsis thaliana VERNALIZATION1
-
Mylne, J. S., Mas, C., and Hill, J. M. (2012) NMRassignment and secondary structure of the C-terminal DNA binding domain of Arabidopsis thaliana VERNALIZATION1. Biomol. NMR Assign. 6, 5-8
-
(2012)
Biomol. NMR Assign.
, vol.6
, pp. 5-8
-
-
Mylne, J.S.1
Mas, C.2
Hill, J.M.3
-
7
-
-
56549125270
-
The plant B3 superfamily
-
Swaminathan, K., Peterson, K., and Jack, T. (2008) The plant B3 superfamily. Trends Plant Sci. 13, 647-655
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 647-655
-
-
Swaminathan, K.1
Peterson, K.2
Jack, T.3
-
8
-
-
0033556230
-
RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants
-
Kagaya, Y., Ohmiya, K., and Hattori, T. (1999) RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res. 27, 470-478
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 470-478
-
-
Kagaya, Y.1
Ohmiya, K.2
Hattori, T.3
-
9
-
-
16244416723
-
Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1
-
Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Hayami, N., Terada, T., Shirouzu, M., Osanai, T., Tanaka, A., Seki, M., Shinozaki, K., and Yokoyama, S. (2004) Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1. Plant Cell 16, 3448-3459
-
(2004)
Plant Cell
, vol.16
, pp. 3448-3459
-
-
Yamasaki, K.1
Kigawa, T.2
Inoue, M.3
Tateno, M.4
Yamasaki, T.5
Yabuki, T.6
Aoki, M.7
Seki, E.8
Matsuda, T.9
Tomo, Y.10
Hayami, N.11
Terada, T.12
Shirouzu, M.13
Osanai, T.14
Tanaka, A.15
Seki, M.16
Shinozaki, K.17
Yokoyama, S.18
-
10
-
-
24344502006
-
Structure of the B3 domain from Arabidopsis thaliana protein At1g16640
-
Waltner, J. K., Peterson, F. C., Lytle, B. L., and Volkman, B. F. (2005) Structure of the B3 domain from Arabidopsis thaliana protein At1g16640. Protein Sci. 14, 2478-2483
-
(2005)
Protein Sci.
, vol.14
, pp. 2478-2483
-
-
Waltner, J.K.1
Peterson, F.C.2
Lytle, B.L.3
Volkman, B.F.4
-
11
-
-
33645518823
-
Efficient production of male and female sterile plants by expression of a chimeric repressor in Arabidopsis and rice
-
Mitsuda, N., Hiratsu, K., Todaka, D., Nakashima, K., Yamaguchi-Shinozaki, K., and Ohme-Takagi, M. (2006) Efficient production of male and female sterile plants by expression of a chimeric repressor in Arabidopsis and rice. Plant Biotechnol. J. 4, 325-332
-
(2006)
Plant Biotechnol. J.
, vol.4
, pp. 325-332
-
-
Mitsuda, N.1
Hiratsu, K.2
Todaka, D.3
Nakashima, K.4
Yamaguchi-Shinozaki, K.5
Ohme-Takagi, M.6
-
12
-
-
0027435506
-
In planta Agrobacteriummediated gene transfer by infiltration of adult Arabidopsis thaliana plants
-
Bechtold, N., Ellis, J., and Pelletier, G. (1993) In planta Agrobacteriummediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. III Sci. Vie 316, 1194-1199
-
(1993)
C. R. Acad. Sci. III Sci. Vie
, vol.316
, pp. 1194-1199
-
-
Bechtold, N.1
Ellis, J.2
Pelletier, G.3
-
13
-
-
61849179659
-
Expression, purification and preliminary X-ray diffraction studies of VERNALIZATION1208-341 from Arabidopsis thaliana
-
King, G., Hill, J. M., Martin, J. L., and Mylne, J. S. (2009) Expression, purification and preliminary X-ray diffraction studies of VERNALIZATION1208-341 from Arabidopsis thaliana. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 65, 291-294
-
(2009)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.65
, pp. 291-294
-
-
King, G.1
Hill, J.M.2
Martin, J.L.3
Mylne, J.S.4
-
14
-
-
77949599606
-
Characterization of the DsbA oxidative folding catalyst from Pseudomonas aeruginosa reveals a highly oxidizing protein that binds small molecules
-
Shouldice, S. R., Heras, B., Jarrott, R., Sharma, P., Scanlon, M. J., and Martin, J. L. (2010) Characterization of the DsbA oxidative folding catalyst from Pseudomonas aeruginosa reveals a highly oxidizing protein that binds small molecules. Antioxid. Redox. Signal. 12, 921-931
-
(2010)
Antioxid. Redox. Signal.
, vol.12
, pp. 921-931
-
-
Shouldice, S.R.1
Heras, B.2
Jarrott, R.3
Sharma, P.4
Scanlon, M.J.5
Martin, J.L.6
-
15
-
-
0036849859
-
Blu-Ice and the Distributed Control System: Software for data acquisition and instrument control at macromolecular crystallography beamlines
-
McPhillips, T. M., McPhillips, S. E., Chiu, H.-J., Cohen, A. E., Deacon, A. M., Ellis, P. J., Garman, E., Gonzalez, A., Sauter, N. K., Phizackerley, R. P., Soltis, S. M., and Kuhn, P. (2002) Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines. J. Synchrotron Radiat. 9, 401-406
-
(2002)
J. Synchrotron Radiat.
, vol.9
, pp. 401-406
-
-
McPhillips, T.M.1
McPhillips, S.E.2
Chiu, H.-J.3
Cohen, A.E.4
Deacon, A.M.5
Ellis, P.J.6
Garman, E.7
Gonzalez, A.8
Sauter, N.K.9
Phizackerley, R.P.10
Soltis, S.M.11
Kuhn, P.12
-
16
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G. M. (2010) Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D 66, 479-485
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
18
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solu-tion
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., Mc-Coy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solu-tion. Acta Crystallogr. D 66, 213-221
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.-W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
Mc-Coy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
19
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P., and Cowtan, K. (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
20
-
-
35548993306
-
The Phenix refinement framework
-
Afonine, P. V., Grosse-Kunstleve, R. W., and Adams, P. D. (2005) The Phenix refinement framework. CCP4 Newsl. Protein Crystallogr. 42, 8
-
(2005)
CCP4 Newsl. Protein Crystallogr.
, vol.42
, pp. 8
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
-
21
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B., Arendall, W. B., 3rd, Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S., and Richardson, D. C. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
22
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
Roy, A., Kucukural, A., and Zhang, Y. (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5, 725-738
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
23
-
-
0038806468
-
Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis
-
Hiratsu, K., Matsui, K., Koyama, T., and Ohme-Takagi, M. (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34, 733-739
-
(2003)
Plant J.
, vol.34
, pp. 733-739
-
-
Hiratsu, K.1
Matsui, K.2
Koyama, T.3
Ohme-Takagi, M.4
-
24
-
-
0037070613
-
The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers
-
Hiratsu, K., Ohta, M., Matsui, K., and Ohme-Takagi, M. (2002) The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers. FEBS Lett. 514, 351-354
-
(2002)
FEBS Lett.
, vol.514
, pp. 351-354
-
-
Hiratsu, K.1
Ohta, M.2
Matsui, K.3
Ohme-Takagi, M.4
-
25
-
-
0034860366
-
Repression domains of class II ERF transcriptional repressors share an essential motif for active repression
-
Ohta, M., Matsui, K., Hiratsu, K., Shinshi, H., and Ohme-Takagi, M. (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13, 1959-1968
-
(2001)
Plant Cell
, vol.13
, pp. 1959-1968
-
-
Ohta, M.1
Matsui, K.2
Hiratsu, K.3
Shinshi, H.4
Ohme-Takagi, M.5
-
26
-
-
77949511433
-
Genome-wide analysis of ethylene-responsive element binding factor-associated amphiphilic repression motif-containing transcriptional regulators in Arabidopsis
-
Kagale, S., Links, M. G., and Rozwadowski, K. (2010) Genome-wide analysis of ethylene-responsive element binding factor-associated amphiphilic repression motif-containing transcriptional regulators in Arabidopsis. Plant Physiol. 152, 1109-1134
-
(2010)
Plant Physiol.
, vol.152
, pp. 1109-1134
-
-
Kagale, S.1
Links, M.G.2
Rozwadowski, K.3
-
27
-
-
79954458630
-
Novel vector systems to accelerate functional analysis of transcription factors using chimeric repressor gene-silencing technology (CRES-T)
-
Oshima, Y., Mitsuda, N., Nakata, M., Nakagawa, T., Nagaya, S., Kato, K., and Ohme-Takagi, M. (2011) Novel vector systems to accelerate functional analysis of transcription factors using chimeric repressor gene-silencing technology (CRES-T). Plant Biotechnol. 28, 201-210
-
(2011)
Plant Biotechnol.
, vol.28
, pp. 201-210
-
-
Oshima, Y.1
Mitsuda, N.2
Nakata, M.3
Nakagawa, T.4
Nagaya, S.5
Kato, K.6
Ohme-Takagi, M.7
-
28
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Holm, L.1
Rosenström, P.2
-
29
-
-
0345549459
-
Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold
-
Zhou, X. E., Wang, Y., Reuter, M., Mücke, M., Krüger, D. H., Meehan, E. J., and Chen, L. (2004) Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold. J. Mol. Biol. 335, 307-319
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 307-319
-
-
Zhou, X.E.1
Wang, Y.2
Reuter, M.3
Mücke, M.4
Krüger, D.H.5
Meehan, E.J.6
Chen, L.7
-
30
-
-
71049141657
-
Structural mechanisms for the 5'-CCWGG sequence recognition by the N-and C-terminal domains of EcoRII
-
Golovenko, D., Manakova, E., Tamulaitiene, G., Grazulis, S., and Siksnys, V. (2009) Structural mechanisms for the 5'-CCWGG sequence recognition by the N-and C-terminal domains of EcoRII. Nucleic Acids Res. 37, 6613-6624
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6613-6624
-
-
Golovenko, D.1
Manakova, E.2
Tamulaitiene, G.3
Grazulis, S.4
Siksnys, V.5
-
31
-
-
27644485012
-
Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease
-
Grazulis, S., Manakova, E., Roessle, M., Bochtler, M., Tamulaitiene, G., Huber, R., and Siksnys, V. (2005) Structure of the metal-independent restriction enzyme BfiI reveals fusion of a specific DNA-binding domain with a nonspecific nuclease. Proc. Natl. Acad. Sci. U. S. A. 102, 15797-15802
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 15797-15802
-
-
Grazulis, S.1
Manakova, E.2
Roessle, M.3
Bochtler, M.4
Tamulaitiene, G.5
Huber, R.6
Siksnys, V.7
-
32
-
-
84873316196
-
-
in press
-
Yamasaki, K., Kigawa, T., Seki, M., Shinozaki, K., and Yokoyama, S. (2012) Trends Plant Sci., in press
-
(2012)
Trends Plant Sci.
-
-
Yamasaki, K.1
Kigawa, T.2
Seki, M.3
Shinozaki, K.4
Yokoyama, S.5
-
33
-
-
79954580509
-
-
Schrödinger, LLC, San Diego, CA
-
Schrödinger, L L C (2010) The PyMOL Molecular Graphics System, Version 1.4, Schrödinger, LLC, San Diego, CA
-
(2010)
The PyMOL Molecular Graphics System, Version 1.4
-
-
Schrödinger, L.L.C.1
|