Detection of human coronaviruses in simultaneously collected stool samples and nasopharyngeal swabs from hospitalized children with acute gastroenteritis

Virology Journal

Volumn 10, Issue , 2013, Pages

  Jevšnik, Monika ^a   Steyer, Andrej ^a   Zrim, Tamara ^a   Pokorn, Marko ^b   Mrvič, Tatjana ^b   Grosek, Štefan ^b   Strle, Franc ^b   Lusa, Lara ^c   Petrovec, Miroslav ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

^b UNIVERSITY MEDICAL CENTRE LJUBLJANA   (Slovenia)

^c UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Human coronavirus; Respiratory infection; Viral gastroenteritis

Indexed keywords

ACUTE GASTROENTERITIS; ARTICLE; CHILD; CONTROLLED STUDY; CORONAVIRUS; ELECTIVE SURGERY; FECES ANALYSIS; GASTROINTESTINAL INFECTION; HUMAN; MAJOR CLINICAL STUDY; NASOPHARYNGEAL SWAB; NOSE SMEAR; PRESCHOOL CHILD; PROSPECTIVE STUDY; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY TRACT INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS DETECTION;

ACUTE DISEASE; CHILD; CHILD, PRESCHOOL; CORONAVIRUS; CORONAVIRUS INFECTIONS; FECES; FEMALE; GASTROENTERITIS; HOSPITALIZATION; HUMANS; MALE; NASOPHARYNX; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

CORONAVIRUS;

EID: 84873276488     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-46     Document Type: Article

References (26)

1. The Tecumseh study of respiratory illness VI. Frequency of and relationship between outbreaks of coronavirus infection. Monto AS, Lim SK, J Infect Dis 1974 129 271 276 10.1093/infdis/129.3.271 4816305
2. The human enteric coronaviruses. Clarke SK, Caul EO, Egglestone SI, Postgrad Med J 1979 55 135 142 10.1136/pgmj.55.640.135 461276 (Pubitemid 9137499)
3. Dual enteric and respiratory tropisms of winter dysentery bovine coronavirus in calves. Park SJ, Kim GY, Choy HE, Hong YJ, Saif LJ, Jeong JH, Park SI, Kim HH, Kim SK, Shin SS, Kang MI, Cho KO, Arch Virol 2007 152 1885 1900 10.1007/s00705-007-1005-2 17564760 (Pubitemid 47498127)
4. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. Drosten C, Gunther S, Preiser W, van der Werf S, Brodt HR, Becker S, Rabenau H, Panning M, Kolesnikova L, Fouchier RA, Berger A, Burguiere AM, Cinatl J, Eickmann M, Escriou N, Grywna K, Kramme S, Manuguerra JC, Muller S, Rickerts V, Sturmer M, Vieth S, Klenk HD, Osterhaus AD, Schmitz H, Doerr HW, N Engl J Med 2003 348 1967 1976 10.1056/NEJMoa030747 12690091 (Pubitemid 36569985)
5. Coronavirus as a possible cause of severe acute respiratory syndrome. Peiris JS, Lai ST, Poon LL, Guan Y, Yam LY, Lim W, Nicholls J, Yee WK, Yan WW, Cheung MT, Cheng VC, Chan KH, Tsang DN, Yung RW, Ng TK, Yuen KY, Lancet 2003 361 1319 1325 10.1016/S0140-6736(03)13077-2 12711465 (Pubitemid 36514862)
6. Enteric involvement of severe acute respiratory syndrome-associated coronavirus infection. Leung WK, To KF, Chan PK, Chan HL, Wu AK, Lee N, Yuen KY, Sung JJ, Gastroenterology 2003 125 1011 1017 10.1016/j.gastro.2003.08.001 14517783 (Pubitemid 37193447)
7. Clinical progression and viral load in a community outbreak of coronavirus-associated SARS pneumonia: a prospective study. Peiris JS, Chu CM, Cheng VC, Chan KS, Hung IF, Poon LL, Law KI, Tang BS, Hon TY, Chan CS, Chan KH, Ng JS, Zheng BJ, Ng WL, Lai RW, Guan Y, Yuen KY, Lancet 2003 361 1767 1772 10.1016/S0140-6736(03)13412-5 12781535 (Pubitemid 36638424)
8. Impact of human coronavirus infections in otherwise healthy children who attended an emergency department. Esposito S, Bosis S, Niesters HG, Tremolati E, Begliatti E, Rognoni A, Tagliabue C, Principi N, Osterhaus AD, J Med Virol 2006 78 1609 1615 10.1002/jmv.20745 17063525 (Pubitemid 44672504)
9. Epidemiology and clinical presentations of human coronavirus NL63 infections in hong kong children. Leung TF, Li CY, Lam WY, Wong GW, Cheuk E, Ip M, Ng PC, Chan PK, J Clin Microbiol 2009 47 3486 3492 10.1128/JCM.00832-09 19759228
10. Clinical and molecular epidemiological features of coronavirus HKU1-associated community-acquired pneumonia. Woo PC, Lau SK, Tsoi HW, Huang Y, Poon RW, Chu CM, Lee RA, Luk WK, Wong GK, Wong BH, Cheng VC, Tang BS, Wu AK, Yung RW, Chen H, Guan Y, Chan KH, Yuen KY, J Infect Dis 2005 192 1898 1907 10.1086/497151 16267760 (Pubitemid 41681887)
11. Detection of human coronaviruses in children with acute gastroenteritis. Risku M, Lappalainen S, Rasanen S, Vesikari T, J Clin Virol 2010 48 27 30 10.1016/j.jcv.2010.02.013 20233673
12. Detection of the new human coronavirus HKU1: a report of 6 cases. Vabret A, Dina J, Gouarin S, Petitjean J, Corbet S, Freymuth F, Clin Infect Dis 2006 42 634 639 10.1086/500136 16447108 (Pubitemid 43271376)
13. Human coronaviruses are uncommon in patients with gastrointestinal illness. Esper F, Ou Z, Huang YT, J Clin Virol 2010 48 131 133 10.1016/j.jcv.2010.03.007 20362494
14. Viremia and nasal and rectal shedding of rotavirus in gnotobiotic pigs inoculated with Wa human rotavirus. Azevedo MS, Yuan L, Jeong KI, Gonzalez A, Nguyen TV, Pouly S, Gochnauer M, Zhang W, Azevedo A, Saif LJ, J Virol 2005 79 5428 5436 10.1128/JVI.79.9.5428-5436.2005 15827157 (Pubitemid 40548211)
15. Detection of equine herpesvirus type 1 using a real-time polymerase chain reaction. Diallo IS, Hewitson G, Wright L, Rodwell BJ, Corney BG, J Virol Methods 2006 131 92 98 10.1016/j.jviromet.2005.07.010 16137772 (Pubitemid 41772566)
16. Comparison of different molecular methods for assessment of equine arteritis virus (EAV) infection: a novel one-step MGB real-time RT-PCR assay, PCR-ELISA and classical RT-PCR for detection of highly diverse sequences of Slovenian EAV variants. Mankoc S, Hostnik P, Grom J, Toplak I, Klobucar I, Kosec M, Barlic-Maganja D, J Virol Methods 2007 146 341 354 10.1016/j.jviromet.2007. 07.019 17854913 (Pubitemid 350026650)
17. Clinical disease in children associated with newly described coronavirus subtypes. Kuypers J, Martin ET, Heugel J, Wright N, Morrow R, Englund JA, Pediatrics 2007 119 70 e76 10.1542/peds.2006-1406 17130280 (Pubitemid 46397808)
18. Evaluation of quantitative and type-specific real-time RT-PCR assays for detection of respiratory syncytial virus in respiratory specimens from children. Kuypers J, Wright N, Morrow R, J Clin Virol 2004 31 123 129 10.1016/j.jcv.2004.03.018 15364268 (Pubitemid 39208951)
19. Comparison of real-time PCR assays with fluorescent-antibody assays for diagnosis of respiratory virus infections in children. Kuypers J, Wright N, Ferrenberg J, Huang ML, Cent A, Corey L, Morrow R, J Clin Microbiol 2006 44 2382 2388 10.1128/JCM.00216-06 16825353 (Pubitemid 44109661)
20. Real-time RT-PCR assays for type and subtype detection of influenza A and B viruses. Daum LT, Canas LC, Arulanandam BP, Niemeyer D, Valdes JJ, Chambers JP, Influenza Other Respi Viruses 2007 1 167 175 10.1111/j.1750-2659.2007.00024. x 19432632
21. Real-time reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. Maertzdorf J, Wang CK, Brown JB, Quinto JD, Chu M, de Graaf M, van den Hoogen BG, Spaete R, Osterhaus AD, Fouchier RA, J Clin Microbiol 2004 42 981 986 10.1128/JCM.42.3.981-986.2004 15004041 (Pubitemid 38332813)
22. Real-time PCR assays for detection of bocavirus in human specimens. Lu X, Chittaganpitch M, Olsen SJ, Mackay IM, Sloots TP, Fry AM, Erdman DD, J Clin Microbiol 2006 44 3231 3235 10.1128/JCM.00889-06 16954253 (Pubitemid 44413757)
23. Simultaneous detection of human bocavirus and adenovirus by multiplex real-time PCR in a Belgian paediatric population. De Vos N, Vankeerberghen A, Vaeyens F, Van Vaerenbergh K, Boel A, De Beenhouwer H, Eur J Clin Microbiol Infect Dis 2009 28 1305 1310 10.1007/s10096-009-0780-y 19705175
24. Diagnosis of human metapneumovirus and rhinovirus in patients with respiratory tract infections by an internally controlled multiplex real-time RNA PCR. Scheltinga SA, Templeton KE, Beersma MF, Claas EC, J Clin Virol 2005 33 306 311 10.1016/j.jcv.2004.08.021 15994117 (Pubitemid 40982520)
25. Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. Kageyama T, Kojima S, Shinohara M, Uchida K, Fukushi S, Hoshino FB, Takeda N, Katayama K, J Clin Microbiol 2003 41 1548 1557 10.1128/JCM.41.4.1548-1557.2003 12682144 (Pubitemid 36428103)
26. Novel approach for detection of enteric viruses to enable syndrome surveillance of acute viral gastroenteritis. Svraka S, van der Veer B, Duizer E, Dekkers J, Koopmans M, Vennema H, J Clin Microbiol 2009 47 1674 1679 10.1128/JCM.00307-09 19339472