Isolation and biochemical characterization of two novel metagenome-derived esterases

Applied Biochemistry and Biotechnology

Volumn 169, Issue 1, 2013, Pages 15-28

  Ouyang, Li Ming ^a   Liu, Jia Ying ^a   Qiao, Ming ^a   Xu, Jian He ^a  

^a EAST CHINA UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Esterase; Fosmid; Metagenomic library; p Nitrophenyl ester; Plasmid

Indexed keywords

AMINO ACID SEQUENCE; BIOCHEMICAL CHARACTERIZATION; CHIRAL SYNTHONS; ESTERASE; FOSMID; METAGENOMIC LIBRARIES; OPTIMUM REACTION TEMPERATURE; PLASMID; SHORT-CHAIN FATTY ACIDS; SIDE-CHAINS; SOIL AND WATER;

AMINO ACIDS; DIMETHYL SULFOXIDE; DNA; ENZYMES; ESTERIFICATION; METHANOL;

ESTERS;

DIMETHYL SULFOXIDE; ESTERASE; ESTERASE ESTF4K; ESTERASE ESTP2K; METHANOL; METHYL 3 PHENYLGLYCIDATE; OCTANOIC ACID; PHENYLGLYCINE; TRIACYLGLYCEROL LIPASE; UNCLASSIFIED DRUG; WATER;

AMINO ACID SEQUENCE; ARTICLE; ENANTIOSELECTIVITY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME ISOLATION; ISOLATION PROCEDURE; METAGENOME; NEISSERIA ELONGATA; NONHUMAN; PH; SOIL; TEMPERATURE;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CLONING, MOLECULAR; ENZYME STABILITY; ESTERASES; FRESH WATER; GENE LIBRARY; HYDROGEN-ION CONCENTRATION; METAGENOME; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SOIL; SUBSTRATE SPECIFICITY; TEMPERATURE;

NEISSERIA ELONGATA;

EID: 84873088485     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-012-9949-4     Document Type: Article

References (24)

1. Jaeger, K. E.; Arpigny, J. L. (1999). Bacterial lipolytic enzymes: classification and properties. Biochemical Journal, 343, 177-183.
2. Handelsman, J.; Rondon, M. R.; Brady, S. F.; Clardy, J.; Goodman, R. M. (1998). Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chemical Biology, 5, R245-R249.
3. Tao, W.; Lee, M. H.; Wu, J.; Kim, N. H.; Lee, S. W. (2011). Isolation and characterization of a family VII esterase derived from alluvial soil metagenomic library. Journal of Microbiology, 49, 178-185.
4. Kim, Y. H.; Kwon, E. J.; Kim, S. K.; Jeong, Y. S.; Kim, J.; Yun, H. D. (2010). Molecular cloning and characterization of a novel family VIII alkaline esterase from a compost metagenomic library. Biochemical and Biophysical Research Communications, 393, 45-49.
5. Rashamuse, K.; Magomani, V.; Ronneburg, T.; Brady, D. (2009). A novel family VIII carboxylesterase derived from a leachate metagenome library exhibits promiscuous beta-lactamase activity on nitrocefin. Applied Microbiology and Biotechnology, 83, 491-500.
6. Beauchemin, K. A.; Colombatto, D.; Morgavi, D. P. (2004). A rationale for the development of feed enzyme products for ruminants. Canadian Journal of Animal Science, 84, 23-36.
7. JunGang, L.; KeGui, Z.; WenJun, H. (2010). Cloning and biochemical characterization of a novel lipolytic gene from activated sludge metagenome, and its gene product. Microbial Cell Factories, 9, 83.
8. Zhou, J.; Bruns, M. A.; Tiedje, J. M. (1996). DNA recovery from soils of diverse composition. Applied and Environmental Microbiology, 62, 316-322.
9. Walsh, T. R.; Payne, D. J.; MacGowan, A. P.; Bennett, P. M. (1995). A clinical isolate of Aeromonas sobria with three chromosomally mediated inducible beta-lactamases: a cephalosporinase, a penicillinase and a third enzyme, displaying carbapenemase activity. The Journal of Antimicrobial Chemotherapy, 35, 271-279.
10. Streit, W. R.; Elend, C.; Schmeisser, C.; Leggewie, C.; Babiak, P.; Carballeira, J. D.; Steele, H. L.; Reymond, J. L.; Jaeger, K. E. (2006). Isolation and biochemical characterization of two novel metagenome-derived esterases. Appl Environ Microb, 72, 3637-3645.
11. Di Guilmi, A. M.; Garau, G.; Lemaire, D.; Vernet, T.; Dideberg, O. (2005). Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein E from Streptococcus pneumoniae - new structural features among the metallo-beta-lactamase superfamily. Journal of Biological Chemistry, 280, 28591-28600.
12. Hiraoka, M.; Abe, A.; Shayman, J. A. (2002). Cloning and characterization of a lysosomal phospholipase A2, 1-O-acylceramide synthase. Journal of Biological Chemistry, 277, 10090-10099.
13. Kang, C. H.; Oh, K. H.; Lee, M. H.; Oh, T. K.; Kim, B. H.; Yoon, J. (2011). A novel family VII esterase with industrial potential from compost metagenomic library. Microbial Cell Factories, 10, 41.
14. Lee, M. H.; Hong, K. S.; Malhotra, S.; Park, J. H.; Hwang, E. C.; Choi, H. K.; Kim, Y. S.; Tao, W.; Lee, S. W. (2010). A new esterase EstD2 isolated from plant rhizosphere soil metagenome. Applied Microbiology and Biotechnology, 88, 1125-1134.
15. Wei, P.; Bai, L.; Song, W.; Hao, G. (2009). Characterization of two soil metagenome-derived lipases with high specificity for p-nitrophenyl palmitate. Archives of Microbiology, 191, 233-240.
16. Lee, C. Y.; Liaw, R. B.; Cheng, M. P.; Wu, M. C. (2010). Use of metagenomic approaches to isolate lipolytic genes from activated sludge. Bioresource Technol, 101, 8323-8329.
17. Lammle, K.; Zipper, H.; Breuer, M.; Hauer, B.; Buta, C.; Brunner, H.; Rupp, S. (2007). Identification of novel enzymes with different hydrolytic activities by metagenome expression cloning. Journal of Biotechnology, 127, 575-592.
18. Nakajima-Kambe, T.; Mayumi, D.; Akutsu-Shigeno, Y.; Uchiyama, H.; Nomura, N. (2008). Identification and characterization of novel poly(DL-lactic acid) depolymerases from metagenome. Appl Microbiol Biot, 79, 743-750.
19. Tirawongsaroj, P.; Sriprang, R.; Harnpicharnchai, P.; Thongaram, T.; Champreda, V.; Tanapongpipat, S.; Pootanakit, K.; Eurwilaichitr, L. (2008). Novel thermophilic and thermostable lipolytic enzymes from a Thailand hot spring metagenomic library. Journal of Biotechnology, 133, 42-49.
20. Roh, C.; Villatte, F. (2008). Isolation of a low-temperature adapted lipolytic enzyme from uncultivated micro-organism. Journal of Applied Microbiology, 105, 116-123.
21. Kim, E. Y.; Oh, K. H.; Lee, M. H.; Kang, C. H.; Oh, T. K.; Yoon, J. H. (2009). Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases. Applied and Environmental Microbiology, 75, 257-260.
22. Jeon, J. H.; Kim, J. T.; Kim, Y. J.; Kim, H. K.; Lee, H. S.; Kang, S. G.; Kim, S. J.; Lee, J. H. (2009). Cloning and characterization of a new cold-active lipase from a deep-sea sediment metagenome. Applied Microbiology and Biotechnology, 81, 865-874.
23. Cowan, D.; Heath, C.; Hu, X. P.; Cary, S. C. (2009). Identification of a novel alkaliphilic esterase active at low temperatures by screening a metagenomic library from antarctic desert soil. Appl Environ Microb, 75, 4657-4659.
24. Zhang, T.; Han, W. J. (2009). Gene cloning and characterization of a novel esterase from activated sludge metagenome. Microbial Cell Factories, 8, 67.