메뉴 건너뛰기




Volumn 9, Issue 6, 2011, Pages 238-244

BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data

Author keywords

Duplicate reads; Next generation sequencing; Quality assessment; Sequencing error

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER ANALYSIS; COMPUTER PROGRAM; DATA ANALYSIS; DEVICES; GENE SEQUENCE; GENE TECHNOLOGY; QUALITY CONTROL;

EID: 84863054719     PISSN: 16720229     EISSN: 22103244     Source Type: Journal    
DOI: 10.1016/S1672-0229(11)60027-2     Document Type: Article
Times cited : (25)

References (17)
  • 1
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker M.L. Sequencing technologies - the next generation. Nat Rev. Genet. 2010, 11:31-46.
    • (2010) Nat Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 3
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster S.C. Next-generation sequencing transforms today's biology. Nat. Methods 2008, 5:16-18.
    • (2008) Nat. Methods , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 4
    • 68249092574 scopus 로고    scopus 로고
    • Massively parallel sequencing: the next big thing in genetic medicine
    • Tucker T., et al. Massively parallel sequencing: the next big thing in genetic medicine. Am. J. Hum. Genet. 2009, 85:142-154.
    • (2009) Am. J. Hum. Genet. , vol.85 , pp. 142-154
    • Tucker, T.1
  • 5
    • 78650868150 scopus 로고    scopus 로고
    • A window into third-generation sequencing
    • Schadt E.E., et al. A window into third-generation sequencing. Hum. Mol. Genet. 2010, 19:R227-R240.
    • (2010) Hum. Mol. Genet. , vol.19
    • Schadt, E.E.1
  • 6
    • 60149112578 scopus 로고    scopus 로고
    • Bioinformatics for next generation sequencing
    • Bateman A., Quackenbush J. Bioinformatics for next generation sequencing. Bioinformatics 2009, 25:429.
    • (2009) Bioinformatics , vol.25 , pp. 429
    • Bateman, A.1    Quackenbush, J.2
  • 7
    • 47149111640 scopus 로고    scopus 로고
    • TileQC: a system for tile-based quality control of Solexa data
    • Dolan P.C., Denver D.R. TileQC: a system for tile-based quality control of Solexa data. BMC Bioinformatics 2008, 9:250.
    • (2008) BMC Bioinformatics , vol.9 , pp. 250
    • Dolan, P.C.1    Denver, D.R.2
  • 8
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
    • Cox M.P., et al. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 2010, 11:485.
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1
  • 9
    • 69849115727 scopus 로고    scopus 로고
    • PIQA: pipeline for Illumina G1 genome analyzer data quality assessment
    • Martinez-Alcantara A., et al. PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinformatics 2009, 25:2438-2439.
    • (2009) Bioinformatics , vol.25 , pp. 2438-2439
    • Martinez-Alcantara, A.1
  • 10
    • 63949083912 scopus 로고    scopus 로고
    • Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
    • Kozarewa I., et al. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat. Methods 2009, 6:291-295.
    • (2009) Nat. Methods , vol.6 , pp. 291-295
    • Kozarewa, I.1
  • 11
    • 77950645212 scopus 로고    scopus 로고
    • Artificial and natural duplicates in pyrosequencing reads of metagenomic data
    • Niu B., et al. Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 2010, 11:187.
    • (2010) BMC Bioinformatics , vol.11 , pp. 187
    • Niu, B.1
  • 12
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 13
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A., et al. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010, 20:1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 14
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • Li R., et al. The sequence and de novo assembly of the giant panda genome. Nature 2010, 463:311-317.
    • (2010) Nature , vol.463 , pp. 311-317
    • Li, R.1
  • 15
    • 55049090961 scopus 로고    scopus 로고
    • Probabilistic base calling of Solexa sequencing data
    • Rougemont J., et al. Probabilistic base calling of Solexa sequencing data. BMC Bioinformatics 2008, 9:431.
    • (2008) BMC Bioinformatics , vol.9 , pp. 431
    • Rougemont, J.1
  • 16
    • 38749091304 scopus 로고    scopus 로고
    • Pyrobayes: an improved base caller for SNP discovery in pyrosequences
    • Quinlan A.R., et al. Pyrobayes: an improved base caller for SNP discovery in pyrosequences. Nat. Methods 2008, 5:179-181.
    • (2008) Nat. Methods , vol.5 , pp. 179-181
    • Quinlan, A.R.1
  • 17
    • 77956340995 scopus 로고    scopus 로고
    • Comprehensive comparative analysis of strand-specific RNA sequencing methods
    • Levin J.Z., et al. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods 2010, 7:709-715.
    • (2010) Nat. Methods , vol.7 , pp. 709-715
    • Levin, J.Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.