-
1
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, et al. The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326(5956):1112-1115.
-
(2009)
Science
, vol.326
, Issue.5956
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
-
2
-
-
34250902354
-
Genome sequence of Aedes aegypti, a major arbovirus vector
-
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science 2007, 316(5832):1718-1723.
-
(2007)
Science
, vol.316
, Issue.5832
, pp. 1718-1723
-
-
Nene, V.1
Wortman, J.R.2
Lawson, D.3
Haas, B.4
Kodira, C.5
Tu, Z.J.6
Loftus, B.7
Xi, Z.8
Megy, K.9
Grabherr, M.10
-
3
-
-
0033976643
-
Transposable element contributions to plant gene and genome evolution
-
Bennetzen JL. Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 2000, 42(1):251-269.
-
(2000)
Plant Mol Biol
, vol.42
, Issue.1
, pp. 251-269
-
-
Bennetzen, J.L.1
-
4
-
-
79956364806
-
The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies
-
Yuan YW, Wessler SR. The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies. Proc Natl Acad Sci USA 2011, 108(19):7884-7889.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.19
, pp. 7884-7889
-
-
Yuan, Y.W.1
Wessler, S.R.2
-
5
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ. DNA transposons and the evolution of eukaryotic genomes. Annu Rev Genet 2007, 41:331-368.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
6
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, et al. A unified classification system for eukaryotic transposable elements. Nat Rev Genet 2007, 8(12):973-982.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.12
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
Chalhoub, B.6
Flavell, A.7
Leroy, P.8
Morgante, M.9
Panaud, O.10
-
7
-
-
0028450046
-
Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants
-
Bureau TE, Wessler SR. Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants. Plant Cell 1994, 6(6):907-916.
-
(1994)
Plant Cell
, vol.6
, Issue.6
, pp. 907-916
-
-
Bureau, T.E.1
Wessler, S.R.2
-
8
-
-
0026940433
-
Tourist: a large family of small inverted repeat elements frequently associated with maize genes
-
Bureau TE, Wessler SR. Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 1992, 4(10):1283-1294.
-
(1992)
Plant Cell
, vol.4
, Issue.10
, pp. 1283-1294
-
-
Bureau, T.E.1
Wessler, S.R.2
-
9
-
-
0029583698
-
LTR-retrotransposons and MITEs: important players in the evolution of plant genomes
-
Wessler SR, Bureau TE, White SE. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr Opin Genet Dev 1995, 5(6):814-821.
-
(1995)
Curr Opin Genet Dev
, vol.5
, Issue.6
, pp. 814-821
-
-
Wessler, S.R.1
Bureau, T.E.2
White, S.E.3
-
10
-
-
70249087648
-
Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE
-
Yang G, Nagel DH, Feschotte C, Hancock CN, Wessler SR. Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE. Science 2009, 325(5946):1391-1394.
-
(2009)
Science
, vol.325
, Issue.5946
, pp. 1391-1394
-
-
Yang, G.1
Nagel, D.H.2
Feschotte, C.3
Hancock, C.N.4
Wessler, S.R.5
-
11
-
-
1642343363
-
PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements
-
Zhang X, Jiang N, Feschotte C, Wessler SR. PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics 2004, 166(2):971-986.
-
(2004)
Genetics
, vol.166
, Issue.2
, pp. 971-986
-
-
Zhang, X.1
Jiang, N.2
Feschotte, C.3
Wessler, S.R.4
-
12
-
-
0346034923
-
An active DNA transposon family in rice
-
Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, McCouch SR, Wessler SR. An active DNA transposon family in rice. Nature 2003, 421(6919):163-167.
-
(2003)
Nature
, vol.421
, Issue.6919
, pp. 163-167
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Hirochika, H.4
Eddy, S.R.5
McCouch, S.R.6
Wessler, S.R.7
-
13
-
-
0037295458
-
Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)
-
Feschotte C, Swamy L, Wessler SR. Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs). Genetics 2003, 163(2):747-758.
-
(2003)
Genetics
, vol.163
, Issue.2
, pp. 747-758
-
-
Feschotte, C.1
Swamy, L.2
Wessler, S.R.3
-
14
-
-
61449173808
-
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs
-
Kuang H, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Ouyang S, Jiang J, Buell CR, Baker B. Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res 2009, 19(1):42-56.
-
(2009)
Genome Res
, vol.19
, Issue.1
, pp. 42-56
-
-
Kuang, H.1
Padmanabhan, C.2
Li, F.3
Kamei, A.4
Bhaskar, P.B.5
Ouyang, S.6
Jiang, J.7
Buell, C.R.8
Baker, B.9
-
15
-
-
26944501996
-
HATpin, a family of MITE-like hAT mobile elements conserved in diverse plant species that forms highly stable secondary structures
-
Moreno-Vazquez S, Ning J, Meyers BC. hATpin, a family of MITE-like hAT mobile elements conserved in diverse plant species that forms highly stable secondary structures. Plant Mol Biol 2005, 58(6):869-886.
-
(2005)
Plant Mol Biol
, vol.58
, Issue.6
, pp. 869-886
-
-
Moreno-Vazquez, S.1
Ning, J.2
Meyers, B.C.3
-
16
-
-
0037370452
-
MDM-1 and MDM-2: two mutator-derived MITE families in rice
-
Yang G, Hall TC. MDM-1 and MDM-2: two mutator-derived MITE families in rice. J Mol Evol 2003, 56(3):255-264.
-
(2003)
J Mol Evol
, vol.56
, Issue.3
, pp. 255-264
-
-
Yang, G.1
Hall, T.C.2
-
17
-
-
0037329285
-
Vege and Mar: two novel hAT MITE families from Drosophila willistoni
-
Holyoake AJ, Kidwell MG. Vege and Mar: two novel hAT MITE families from Drosophila willistoni. Mol Biol Evol 2003, 20(2):163-167.
-
(2003)
Mol Biol Evol
, vol.20
, Issue.2
, pp. 163-167
-
-
Holyoake, A.J.1
Kidwell, M.G.2
-
18
-
-
84863116863
-
Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa
-
Lu C, Chen J, Zhang Y, Hu Q, Su W, Kuang H. Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa. Mol Biol Evol 2012, 29(3):1005-1017.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.3
, pp. 1005-1017
-
-
Lu, C.1
Chen, J.2
Zhang, Y.3
Hu, Q.4
Su, W.5
Kuang, H.6
-
19
-
-
37349093019
-
Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin
-
Fontanillas P, Hartl DL, Reuter M. Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin. PLoS Genet 2007, 3(11):e210.
-
(2007)
PLoS Genet
, vol.3
, Issue.11
-
-
Fontanillas, P.1
Hartl, D.L.2
Reuter, M.3
-
20
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 2010, 463(7282):763-768.
-
(2010)
Nature
, vol.463
, Issue.7282
, pp. 763-768
-
-
Vogel, J.P.1
Garvin, D.F.2
Mockler, T.C.3
Schmutz, J.4
Rokhsar, D.5
Bevan, M.W.6
-
21
-
-
84907150192
-
The map-based sequence of the rice genome
-
Project IRGS. The map-based sequence of the rice genome. Nature 2005, 436(7052):793-800.
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 793-800
-
-
Project, I.R.G.S.1
-
22
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, et al. The Sorghum bicolor genome and the diversification of grasses. Nature 2009, 457(7229):551-556.
-
(2009)
Nature
, vol.457
, Issue.7229
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
-
23
-
-
78650432054
-
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
-
Han Y, Wessler SR. MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences. Nucleic Acids Res 2010,
-
(2010)
Nucleic Acids Res
-
-
Han, Y.1
Wessler, S.R.2
-
24
-
-
0034724393
-
Insertion site preferences of the P transposable element in Drosophila melanogaster
-
Liao GC, Rehm EJ, Rubin GM. Insertion site preferences of the P transposable element in Drosophila melanogaster. Proc Natl Acad Sci USA 2000, 97(7):3347-3351.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.7
, pp. 3347-3351
-
-
Liao, G.C.1
Rehm, E.J.2
Rubin, G.M.3
-
25
-
-
0033951447
-
Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize
-
Zhang Q, Arbuckle J, Wessler SR. Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize. Proc Natl Acad Sci USA 2000, 97(3):1160-1165.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.3
, pp. 1160-1165
-
-
Zhang, Q.1
Arbuckle, J.2
Wessler, S.R.3
-
26
-
-
70350515004
-
Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
-
Naito K, Zhang F, Tsukiyama T, Saito H, Hancock CN, Richardson AO, Okumoto Y, Tanisaka T, Wessler SR. Unexpected consequences of a sudden and massive transposon amplification on rice gene expression. Nature 2009, 461(7267):1130-1134.
-
(2009)
Nature
, vol.461
, Issue.7267
, pp. 1130-1134
-
-
Naito, K.1
Zhang, F.2
Tsukiyama, T.3
Saito, H.4
Hancock, C.N.5
Richardson, A.O.6
Okumoto, Y.7
Tanisaka, T.8
Wessler, S.R.9
-
27
-
-
78649810751
-
Local DNA hypomethylation activates genes in rice endosperm
-
Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D. Local DNA hypomethylation activates genes in rice endosperm. Proc Natl Acad Sci USA 2010, 107(43):18729-18734.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.43
, pp. 18729-18734
-
-
Zemach, A.1
Kim, M.Y.2
Silva, P.3
Rodrigues, J.A.4
Dotson, B.5
Brooks, M.D.6
Zilberman, D.7
-
28
-
-
78650675586
-
Inaugural Article: DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo
-
Gangadharan S, Mularoni L, Fain-Thornton J, Wheelan SJ, Craig NL. Inaugural Article: DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo. Proc Natl Acad Sci USA 2010, 107(51):21966-21972.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.51
, pp. 21966-21972
-
-
Gangadharan, S.1
Mularoni, L.2
Fain-Thornton, J.3
Wheelan, S.J.4
Craig, N.L.5
-
29
-
-
34249744467
-
Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin
-
Kodama Y, Nagaya S, Shinmyo A, Kato K. Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin. Plant Cell Physiol 2007, 48(3):459-470.
-
(2007)
Plant Cell Physiol
, vol.48
, Issue.3
, pp. 459-470
-
-
Kodama, Y.1
Nagaya, S.2
Shinmyo, A.3
Kato, K.4
-
30
-
-
79952303685
-
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
-
Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci USA 2011, 108(6):2322-2327.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.6
, pp. 2322-2327
-
-
Hollister, J.D.1
Smith, L.M.2
Guo, Y.L.3
Ott, F.4
Weigel, D.5
Gaut, B.S.6
-
31
-
-
38549136871
-
The Rice Annotation Project Database (RAP-DB): 2008 update
-
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Res 2008, 36(Database issue):D1028-1033.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.DATABASE ISSUE
-
-
Tanaka, T.1
Antonio, B.A.2
Kikuchi, S.3
Matsumoto, T.4
Nagamura, Y.5
Numa, H.6
Sakai, H.7
Wu, J.8
Itoh, T.9
Sasaki, T.10
-
32
-
-
33747884345
-
Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
-
Barrett T, Edgar R. Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 2006, 411:352-369.
-
(2006)
Methods Enzymol
, vol.411
, pp. 352-369
-
-
Barrett, T.1
Edgar, R.2
-
33
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 2005, 110(1-4):462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, Issue.1-4
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
34
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010, 26(5):589-595.
-
(2010)
Bioinformatics
, vol.26
, Issue.5
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
|