Binary counting with chemical reactions

Pacific Symposium on Biocomputing 2011, PSB 2011

Volumn , Issue , 2011, Pages 302-313

  Kharam, Aleksandra ^a   Jiang, Hua ^a   Riedel, Marc ^a   Parhi, Keshab ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINARY COUNTERS; BIOCHEMICAL SENSING; CHEMICAL COMPUTATION; CLOCK SIGNAL; DIGITAL ELECTRONICS; DNA-BASED COMPUTATION; MOLECULAR TYPE; POTENTIAL APPLICATIONS; SYNTHETIC BIOLOGY;

DRUG DELIVERY; REACTION RATES;

CHEMICAL REACTIONS;

ALGORITHM; ARTICLE; BIOLOGY; CHEMICAL MODEL; COMPUTER SIMULATION; METHODOLOGY; MOLECULAR COMPUTER; STATISTICS; SYNTHETIC BIOLOGY;

ALGORITHMS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; COMPUTERS, MOLECULAR; MODELS, CHEMICAL; SYNTHETIC BIOLOGY;

EID: 84872951624     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (11)

1. D. Endy, "Foundations for engineering biology," Nature, vol. 438, pp. 449-453, 2005.
2. F. Horn and R. Jackson, "General mass action kinetics," Archive for Rational Mechanics and Analysis, vol. 47, pp. 81-116, 1972.
3. P. ́ Erdi and J. T́oth, Mathematical Models of Chemical Reactions: Theory and Applications of Deterministic and Stochastic Models. Manchester University Press, 1989.
4. L. Lavagno, G. Martin, and L. Scheffer, Electronic Design Automation for Integrated Circuits Handbook. CRC Press, 2006.
5. P. Senum and M. D. Riedel, "Rate-independent biochemical computational modules," in Proceedings of the Pacific Symposium on Biocomputing, 2011.
6. A. Shea, B. Fett, M. D. Riedel, and K. Parhi, "Writing and compiling code into biochemistry," in Proceedings of the Pacific Symposium on Biocomputing, 2010, pp. 456-464.
7. H. Jiang, A. P. Kharam, M. D. Riedel, and K. K. Parhi, "A synthesis flow for digital signal processing with biomolecular reactions," in IEEE International Conference on Computer-Aided Design, 2010.
8. D. Soloveichik, G. Seelig, and E. Winfree, "DNA as a universal substrate for chemical kinetics," Proceedings of the National Academy of Sciences, vol. 107, no. 12, pp. 5393-5398, 2010.
9. I. R. Epstein and J. A. Pojman, An Introduction to Nonlinear Chemical Dynamics: Oscillations, Waves, Patterns, and Chaos. Oxford Univ Press, 1998.
10. L. Qian and E. Winfree, "A simple DNA gate motif for synthesizing large-scale circuits," in DNA Computing, 2009, pp. 70-89.
11. S. Venkataramana, R. M. Dirks, C. T. Ueda, and N. A. Pierce, "Selective cell death mediated by small conditional RNAs," Proceedings of the National Academy of Sciences, 2010 (in press).