Biodegradation of petroleum hydrocarbons in estuarine sediments: Metal influence

Biodegradation

Volumn 24, Issue 1, 2013, Pages 111-123

  Almeida, Raquel ^a   Mucha, Ana P ^a   Teixeira, Catarina ^a,b   Bordalo, Adriano A ^a,b   Almeida, C Marisa R ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b UNIVERSITY OF PORTO   (Portugal)

Author keywords

Biodegradation; Estuary; Metals; Microbial communities; Petroleum hydrocarbons

Indexed keywords

ABSORPTION SPECTROSCOPY; ATOMIC ABSORPTION SPECTROMETRY; BIOCHEMISTRY; BIOREMEDIATION; COPPER; CRUDE OIL; DEGRADATION; ESTUARIES; FOURIER TRANSFORM INFRARED SPECTROSCOPY; GASOLINE; HYDROCARBONS; METALS; MICROORGANISMS; RIVER POLLUTION; SEDIMENTS;

DEGRADATION POTENTIAL; HYDROCARBON DEGRADATION; LABORATORY CONDITIONS; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURES; PETROLEUM HYDROCARBONS; SEDIMENT CHARACTERISTIC; TOTAL PETROLEUM HYDROCARBONS;

BIODEGRADATION;

ABUNDANCE; BIOAVAILABILITY; BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; COMMUNITY STRUCTURE; CRUDE OIL; ESTUARINE SEDIMENT; HEAVY METAL; LABORATORY METHOD; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PETROLEUM HYDROCARBON; REACTION RATE; SEDIMENT POLLUTION; SEDIMENT PROPERTY;

LIMIA ESTUARY; PORTUGAL; VIANA DO CASTELO [PORTUGAL];

EID: 84872908856     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-012-9562-9     Document Type: Article

References (53)

1. Alisi C, Musella R, Tasso F, Ubaldi C, Manzo S, Cremisni C, Sprocati NA (2009) Bioremediation of diesel oil in a co-contaminated soil by bioaugmentation with a microbial formula tailored with native strains selected for heavy metals resistance. Sci Total Environ 407: 3024-3032.
2. Almeida CMR, Mucha AP, Vasconcelos MTSD (2004) Influence of sea rush Juncus maritimus on metal concentration and speciation in estuarine sediment colonized by the plant. Environ Sci Technol 38: 3112-3118.
3. Almeida CMR, Mucha AP, Delgado MFC, Caçador MI, Bordalo AA, Vasconcelos MTSD (2008a) Can PAHs influence Cu accumulation by salt marsh plants? Mar Environ Res 66: 311-318.
4. Almeida CMR, Mucha AP, Delgado MFC, Caçador MI, Bordalo AA, Vasconcelos MTSD (2008b) Influence of a salt marsh plant (Halimione portucaloides) on the concentrations and potential mobility of metals in sediments. Sci Total Environ 403: 188-195.
5. Almeida CMR, Mucha AP, Vasconcelos MTSD (2011) Role of different salt marsh plants on metal retention in an urban estuary (Lima Estuary, NW Portugal). Estuar Coast Shelf Sci 91: 243-249.
6. Amor L, Kennes C, Veiga MC (2001) Kinetics of inhibition in the biodegradation of monoaromatic hydrocarbons in presence of heavy metals. Bioresour Technol 78: 181-185.
7. Atlas R (1995) Petroleum biodegradation and oil spill bioremediation. Mar Pollut Bull 31: 178-182.
8. Baldrian P, Wiesche CD, Gabriel J (2000) Influence of cadmium and mercury on activities of ligninolytic enzymes and degradation of polycyclic aromatic hydrocarbons by Pleurotus ostreatus in soil influence of cadmium and mercury on activities of ligninolytic enzymes and degradation of polycyclic. Appl Environ Microbiol 66: 2471-2478.
9. Barrett JE, Virginia RA, Wall DH, Cary SC, Adams BJ, Hacker AL, Aislabie JM (2006) Co-variation in soil biodiversity and biogeochemistry in Northern and Southern Victoria Land, Antarctica. Antarct Sci 18: 535-548.
10. Becker JM, Parkin T, Nakatsu CH, Wilbur JD, Konopka A (2006) Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil. FEMS Microbial Ecol 51: 220-231.
11. Braddock JF, Lindstrom JE, Brown EJ (1995) Distribution of hydrocarbon-degrading microorganisms in sediments from Prince William Sound, Alaska, following the Exxon Valdez oil spill. Mar Pollut Bull 30: 125-132.
12. Cardinale M, Brusetti L, Quatrini P, Borin S, Puglia AM, Rizzi A, Zanardini E, Sorlini C, Corselli C, Daffonchio D (2004) Comparison of different primer sets for use in automated ribosomal spacer analysis of complex bacterial communities. Appl Environ Microbiol 70: 6147-6156.
13. Chapman PM, Wang F (2001) Assessing sediment contamination in estuaries. Environ Toxicol Chem 20: 3-22.
14. Clarke KR, Gorley RN (2006) PRIMER v6: user manual. Plymouth Marine Laboratory, Plymouth.
15. Couto MNF, Borges J, Guedes P, Almeida R, Monteiro E, Almeida CM, Basto MCP, Vasconcelos MTSD (2012) An improved method for determination of petroleum hydrocarbons from soil using a simple ultrasonic extraction and Fourier transform infrared spectrophotometry. Pet Sci Technol. doi: 10. 1080/10916466. 2011. 587383.
16. Danovaro R, Corinaldesi C, Luna GM, Magagnini M, Manini E, Pusceddu A (2009) Prokaryote diversity and viral production in deep-sea sediments and seamounts. Deep-Sea Res II 56: 738-747.
17. Dempster EL, Pryor KV, Francis D, Young JE, Rogers HJ (1999) Rapid DNA extraction from ferns for PCR-based analyses. Biotechniques 27: 66-68.
18. El-Deeb B, Altalhi AD (2009) Degradative plasmid and heavy metal resistance plasmid naturally coexist in phenol and cyanide assimilating bacteria. Am J Biochem Biotechnol 5: 84-93.
19. Gosh M, Singh SP (2005) A review of phytoremediation of heavy metals and utilization of its byproducts. Appl Ecol Environ Res 3: 1-18.
20. Hewson I, Furhman JA (2004) Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia. Appl Environ Microbiol 70: 3425-3433.
21. Hoffman DR, Okon JL, Sandrin TR (2005) Medium composition affects the degree and pattern of cadmium inhibition of naphthalene biodegradation. Chemosphere 59: 919-927.
22. Hughes N, Poole K (1991) Metal speciation and microbial growth. J Gen Microbiol 137: 725-734.
23. Kachur AV, Koch CJ, Biaglow JE (1998) Mechanism of copper catalyzed oxidation of glutathione. Free Radic Res 28: 259-269.
24. Ke L, Yu KSH, Wong YS, Tam NFY (2005) Spatial and vertical distribution of polycyclic aromatic hydrocarbons in mangrove sediments. Sci Total Environ 340: 177-187.
25. Ke L, Luo L, Wang P, Luan T, Tam NFY (2010) Effects of metals on biosorption and biodegradation of mixed polycyclic aromatic hydrocarbons by a freshwater green alga Selenastrum capricornatum. Bioresour Technol 101: 6950-6961.
26. Kepner RL, Pratt JR (1994) Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present. Microbiol Rev 58: 603-615.
27. Khan M, Scullion J (2000) Effect of soil on microbial responses to metal contamination. Environ Pollut 110: 115-125.
28. Leahy JG, Colwell RR (1990) Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54: 305-315.
29. Long ER, MacDonald DD, Smith SL, Calder F (1995) Incidence of adverse biological effects within ranges of chemical concentrations in marine and estuarine sediments. Environ Manag 19: 81-97.
30. Lytle JS, Lytle TF (2001) Use of plants for toxicity assessment of estuarine ecosystems. Environ Toxicol Chem 20: 68-83.
31. MacNaughton SJ, Stephen JR, Venosa AD, Davis GA, Chang YJ, White DC (1999) Microbial population changes during bioremediation of an experimental oil spill. Appl Environ Microbiol 65: 3566-3574.
32. Malik S, Beer M, Megharaj M, Naidu R (2008) The use of molecular techniques to characterize the microbial communities in contaminated soil and water. Environ Int 34: 265-276.
33. Muckian LM, Grant RJ, Doyle EM, Clipson NJW (2007) Bacterial community structure in soils contaminated by polycyclic aromatic hydrocarbons. Chemosphere 68: 1535-1541.
34. Muckian LM, Grant RJ, Clipson NJW, Doyle EM (2009) Bacterial community dynamics during bioremediation of phenanthrene- and fluoranthene-amended soil. Int Biodeter Biodegrad 63: 52-56.
35. Nies DH (1999) Microbial heavy-metal resistance. Appl Microbiol Biotechnol 51: 730-750.
36. Olaniran AO, Balgobind A, Pillay B (2011) Quantitative assessment of the toxic effects of heavy metals on 1, 2-dichloroethane biodegradation in co-contaminated soil under aerobic condition. Chemosphere 85: 839-847.
37. Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25: 943-948.
38. Ranjard L, Poly F, Lata JC, Mougel C, Thioulouse J, Nazaret S (2001) Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. Appl Environ Microbiol 67: 4479-4487.
39. Ranjard L, Echairi A, Nowak V, Lejon DH, Nouai{dotless}m R, Chaussod R (2006) Field and microcosm experiments to evaluate the effects of agricultural Cu treatment on the density and genetic structure of microbial communities in two different soils. FEMS Microbiol Ecol 58: 303-315.
40. Riis V, Babel W, Pucci OH (2002) Influence of heavy metals on the microbial degradation of diesel fuel. Chemosphere 49: 559-568.
41. Roane TM, Josephson KL, Pepper IL (2001) Dual-bioaugmentation strategy to enhance remediation of contaminated soil. Appl Environ Microbiol 67: 3208-3215.
42. Roy S, Labelle S, Mehta P, Mihoc A, Fortin N, Masson C, Leblanc R, Châteauneuf G, Sura C, Gallipeau C, Olsen C, Deslisle S, Labrecque M, Greer CW (2005) Phytoremediation of heavy metal and PAH-contaminated brownfield sites. Plant Soil 272: 277-290.
43. Said WA, Lewis DL (1991) Quantitative assessment of the effects of metals on microbial-degradation of organic chemicals. Appl Environ Microbiol 57: 1498-1503.
44. Sandrin TR, Maier RM (2003) Impact of metals on the biodegradation of organic pollutants. Environ Health Perspect 111: 1093-1101.
45. Savazzini F, Longa CMO, Pertot I (2009) Impact of the biocontrol agent Trichoderma atroviride SC1 on soil microbial communities of a vineyard in northern Italy. Soil Biol Biochem 41: 1457-1465.
46. Turpeinen R, Kairesalo T, Häggblom MM (2004) Microbial community structure and activity in arsenic-, chromium- and copper-contaminated soils. FEMS Microbiol Ecol 47: 39-50.
47. van Hamme JD, Singh A, Ward OP (2003) Recent advances in petroleum microbiology. Microbiol Mol Rev 67: 503-549.
48. Vidali M (2001) Bioremediation. An overview. Pure Appl Chem 73: 1163-1172.
49. Wrenn BA, Venosa AD (1996) Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable number procedure. Can J Microbiol 42: 252-258.
50. Xu J, Yu Y, Wang P, Guo W, Dai S, Sun H (2007) Polycyclic aromatic hydrocarbons in the surface sediments from Yellow River, China. Chemosphere 67: 1408-1414.
51. Young LY, Liang W, Shor L, Kosson D, Rockne K, Taghon G (2002) Bioavailability of PAHs to bacteria in estuarine sediment. Soil Sediment Contam 11: 488.
52. Zhang J, Cai L, Yuan D, Chen M (2004) Distribution and sources of polynuclear aromatic hydrocarbons in Mangrove surficial sediments of Deep Bay, China. Mar Pollut Bull 49: 479-486.
53. Zhang Z, Rengel Z, Meney K, Pantelic L, Tomanovic R (2011) Polynuclear aromatic hydrocarbons (PAHs) mediate cadmium toxicity to an emergent wetland species. J Hazard Mater 189: 119-126.