-
1
-
-
36049044199
-
Executable cell biology
-
Nov.
-
J. Fisher and T. A. Henzinger, "Executable cell biology." Nature biotechnology, vol. 25, no. 11, pp. 1239-1249, Nov. 2007.
-
(2007)
Nature Biotechnology
, vol.25
, Issue.11
, pp. 1239-1249
-
-
Fisher, J.1
Henzinger, T.A.2
-
2
-
-
65649138437
-
Computational modeling of biochemical networks using COPASI systems biology
-
ser. I. V. Maly, J. M. Walker, and J. M. Walker, Eds. Totowa, NJ: Humana Press, ch. 2
-
P. Mendes, S. Hoops, S. Sahle, R. Gauges, J. Dada, and U. Kummer, "Computational modeling of biochemical networks using COPASI systems biology," ser. Methods in Molecular Biology, I. V. Maly, J. M. Walker, and J. M. Walker, Eds. Totowa, NJ: Humana Press, 2009, vol. 500, ch. 2, pp. 17-59.
-
(2009)
Methods in Molecular Biology
, vol.500
, pp. 17-59
-
-
Mendes, P.1
Hoops, S.2
Sahle, S.3
Gauges, R.4
Dada, J.5
Kummer, U.6
-
3
-
-
0345269975
-
Genetic Network Analyzer: Qualitative simulation of genetic regulatory networks
-
Feb.
-
H. de Jong, J. Geiselmann, C. Hernandez, and M. Page, "Genetic Network Analyzer: qualitative simulation of genetic regulatory networks," Bioinformatics, vol. 19, no. 3, pp. 336-344, Feb. 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 336-344
-
-
De Jong, H.1
Geiselmann, J.2
Hernandez, C.3
Page, M.4
-
4
-
-
0033031386
-
E-CELL: Software environment for whole-cell simulation
-
Jan.
-
M. Tomita, K. Hashimoto, K. Takahashi, T. S. Shimizu, Y. Matsuzaki, F. Miyoshi, K. Saito, S. Tanida, K. Yugi, J. C. Venter, and C. A. H. III, "E-CELL: software environment for whole-cell simulation." Bioinformatics, vol. 15, no. 1, pp. 72-84, Jan. 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.1
, pp. 72-84
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, K.3
Shimizu, T.S.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
H III, C.A.11
-
5
-
-
57049132896
-
Modelling and simulation of biological processes in BlenX
-
March
-
L. Dematté, C. Priami, and A. Romanel, "Modelling and simulation of biological processes in BlenX," SIGMETRICS Perform. Eval. Rev., vol. 35, pp. 32-39, March 2008.
-
(2008)
SIGMETRICS Perform. Eval. Rev.
, vol.35
, pp. 32-39
-
-
Dematté, L.1
Priami, C.2
Romanel, A.3
-
6
-
-
65549101937
-
Bio-PEPA: A framework for the modelling and analysis of biological systems
-
August
-
F. Ciocchetta and J. Hillston, "Bio-PEPA: A framework for the modelling and analysis of biological systems," Theor. Comput. Sci., vol. 410, pp. 3065-3084, August 2009.
-
(2009)
Theor. Comput. Sci.
, vol.410
, pp. 3065-3084
-
-
Ciocchetta, F.1
Hillston, J.2
-
7
-
-
77950314677
-
Modelling and analysis of the NF-κB pathway in Bio-PEPA
-
Transactions on Computational Systems Biology XII, ser. C. Priami, R. Breitling, D. Gilbert, M. Heiner, and A. Uhrmacher, Eds. Springer Berlin / Heidelberg
-
F. Ciocchetta, A. Degasperi, J. Heath, and J. Hillston, "Modelling and analysis of the NF-κB pathway in Bio-PEPA," in Transactions on Computational Systems Biology XII, ser. Lecture Notes in Computer Science, C. Priami, R. Breitling, D. Gilbert, M. Heiner, and A. Uhrmacher, Eds. Springer Berlin / Heidelberg, 2010, vol. 5945, pp. 229-262.
-
(2010)
Lecture Notes in Computer Science
, vol.5945
, pp. 229-262
-
-
Ciocchetta, F.1
Degasperi, A.2
Heath, J.3
Hillston, J.4
-
8
-
-
79960371032
-
BlenX models of α-synuclein and parkin kinetics in neuropathology of Parkinson's disease
-
June
-
P. Lecca, "BlenX models of α-synuclein and parkin kinetics in neuropathology of Parkinson's disease," Journal of Biological Systems, vol. 19, pp. 149-181, June 2011.
-
(2011)
Journal of Biological Systems
, vol.19
, pp. 149-181
-
-
Lecca, P.1
-
9
-
-
0028413052
-
A theory of timed automata
-
April
-
R. Alur and D. L. Dill, "A theory of timed automata," Theor. Comput. Sci., vol. 126, pp. 183-235, April 1994.
-
(1994)
Theor. Comput. Sci.
, vol.126
, pp. 183-235
-
-
Alur, R.1
Dill, D.L.2
-
10
-
-
84872858742
-
-
ANIMO, http://wwwhome.ewi.utwente.nl/~schivos/animo.
-
ANIMO
-
-
-
11
-
-
70349581497
-
Cytoscape: A community-based framework for network modeling
-
Clifton, N.J.
-
S. Killcoyne, G. W. Carter, J. Smith, and J. Boyle, "Cytoscape: a community-based framework for network modeling." Methods in molecular biology (Clifton, N.J.), vol. 563, pp. 219-239, 2009.
-
(2009)
Methods in Molecular Biology
, vol.563
, pp. 219-239
-
-
Killcoyne, S.1
Carter, G.W.2
Smith, J.3
Boyle, J.4
-
12
-
-
84896693115
-
UPPAAL in a nutshell
-
K. G. Larsen, P. Pettersson, and W. Yi, "UPPAAL in a nutshell," International Journal on Software Tools for Technology Transfer (STTT), vol. 1, pp. 134-152, 1997.
-
(1997)
International Journal on Software Tools for Technology Transfer (STTT)
, vol.1
, pp. 134-152
-
-
Larsen, K.G.1
Pettersson, P.2
Yi, W.3
-
13
-
-
84949215100
-
Model checking
-
Foundations of Software Technology and Theoretical Computer Science, ser. S. Ramesh and G. Sivakumar, Eds. Springer Berlin / Heidelberg
-
E. Clarke, "Model checking," in Foundations of Software Technology and Theoretical Computer Science, ser. Lecture Notes in Computer Science, S. Ramesh and G. Sivakumar, Eds. Springer Berlin / Heidelberg, 1997, vol. 1346, pp. 54-56.
-
(1997)
Lecture Notes in Computer Science
, vol.1346
, pp. 54-56
-
-
Clarke, E.1
-
14
-
-
47149087560
-
Approximating continuous systems by timed automata
-
Formal Methods in Systems Biology, ser. J. Fisher, Ed. Springer Berlin / Heidelberg
-
O. Maler and G. Batt, "Approximating continuous systems by timed automata," in Formal Methods in Systems Biology, ser. Lecture Notes in Computer Science, J. Fisher, Ed. Springer Berlin / Heidelberg, 2008, vol. 5054, pp. 77-89.
-
(2008)
Lecture Notes in Computer Science
, vol.5054
, pp. 77-89
-
-
Maler, O.1
Batt, G.2
-
15
-
-
33847355217
-
Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate
-
Feb.
-
S. D. M. Santos, P. J. Verveer, and P. I. H. Bastiaens, "Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate," Nature Cell Biology, vol. 9, no. 3, pp. 324-330, Feb. 2007.
-
(2007)
Nature Cell Biology
, vol.9
, Issue.3
, pp. 324-330
-
-
Santos, S.D.M.1
Verveer, P.J.2
Bastiaens, P.I.H.3
-
16
-
-
79960376940
-
Time for statistical model checking of real-time systems
-
Computer Aided Verification, ser. G. Gopalakrishnan and S. Qadeer, Eds. Springer Berlin / Heidelberg
-
A. David, K. Larsen, A. Legay, M. Mikučionis, and Z. Wang, "Time for statistical model checking of real-time systems," in Computer Aided Verification, ser. Lecture Notes in Computer Science, G. Gopalakrishnan and S. Qadeer, Eds. Springer Berlin / Heidelberg, 2011, vol. 6806, pp. 349-355.
-
(2011)
Lecture Notes in Computer Science
, vol.6806
, pp. 349-355
-
-
David, A.1
Larsen, K.2
Legay, A.3
Mikučionis, M.4
Wang, Z.5
-
17
-
-
79959216670
-
Model-based testing and some steps towards test-based modelling
-
Formal Methods for Eternal Networked Software Systems, ser. M. Bernardo and V. Issarny, Eds. Springer Berlin / Heidelberg
-
J. Tretmans, "Model-based testing and some steps towards test-based modelling," in Formal Methods for Eternal Networked Software Systems, ser. Lecture Notes in Computer Science, M. Bernardo and V. Issarny, Eds. Springer Berlin / Heidelberg, 2011, vol. 6659, pp. 297-326.
-
(2011)
Lecture Notes in Computer Science
, vol.6659
, pp. 297-326
-
-
Tretmans, J.1
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