-
1
-
-
0003871536
-
-
(Marcel Dekker, New York).
-
Computational Biochemistry and Biophysics, edited by, O. M. Becker, A. D. MacKerell, B. Roux, and, M. Watanabe, (Marcel Dekker, New York, 2001).
-
(2001)
Computational Biochemistry and Biophysics
-
-
Becker, O.M.1
MacKerell, Jr.A.D.2
Roux, B.3
Watanabe, M.4
-
2
-
-
0003591661
-
-
(World Scientific, Singapore).
-
G. W. Robinson, S. Zhu, S. Singh, and M. W. Evans, Water in Biology, Chemistry and Physics: Experimental Overviews and Computational Methodologies (World Scientific, Singapore, 1996).
-
(1996)
Water in Biology, Chemistry and Physics: Experimental Overviews and Computational Methodologies
-
-
Robinson, G.W.1
Zhu, S.2
Singh, S.3
Evans, M.W.4
-
3
-
-
0036836445
-
-
10.1016/S0167-7322(02)00094-6
-
B. Guillot, J. Mol. Liq. 101, 219 (2002). 10.1016/S0167-7322(02)00094-6
-
(2002)
J. Mol. Liq.
, vol.101
, pp. 219
-
-
Guillot, B.1
-
5
-
-
57449109985
-
-
10.1039/b805531a
-
C. Vega, J. L. F. Abascal, M. M. Conde, and J. L. Aragones, Faraday Discuss. 141, 251 (2009). 10.1039/b805531a
-
(2009)
Faraday Discuss.
, vol.141
, pp. 251
-
-
Vega, C.1
Abascal, J.L.F.2
Conde, M.M.3
Aragones, J.L.4
-
6
-
-
0002775934
-
-
in, edited by B. Pullman (Reidel, Dordrecht)
-
H. J. C. Berendsen, J. P. M. Postma, W. F. v. Gunsteren, and J. Hermans, in Intermolecular Forces, edited by, B. Pullman, (Reidel, Dordrecht, 1981), p. 331.
-
(1981)
Intermolecular Forces
, pp. 331
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
W, V.F.G.3
Hermans, J.4
-
7
-
-
33645858780
-
-
10.1021/ja00392a016
-
W. L. Jorgensen, J. Am. Chem. Soc. 103, 335 (1981). 10.1021/ja00392a016
-
(1981)
J. Am. Chem. Soc.
, vol.103
, pp. 335
-
-
Jorgensen, W.L.1
-
8
-
-
0004016501
-
-
10.1063/1.445869
-
W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein, J. Chem. Phys. 79, 926 (1983). 10.1063/1.445869
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
12
-
-
2942622288
-
-
10.1063/1.1683075
-
H. W. Horn, W. C. Swope, J. W. Pitera, J. D. Madura, T. J. Dick, G. L. Hura, and T. Head-Gordon, J. Chem. Phys. 120, 9665 (2004). 10.1063/1.1683075
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 9665
-
-
Horn, H.W.1
Swope, W.C.2
Pitera, J.W.3
Madura, J.D.4
Dick, T.J.5
Hura, G.L.6
Head-Gordon, T.7
-
14
-
-
1942425662
-
-
10.1063/1.1652434
-
S. W. Rick, J. Chem. Phys. 120, 6085 (2004). 10.1063/1.1652434
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 6085
-
-
Rick, S.W.1
-
18
-
-
0000298606
-
-
10.1063/1.472313
-
I. M. Svishchev, P. G. Kusalik, J. Wang, and R. J. Boyd, J. Chem. Phys. 105, 4742 (1996). 10.1063/1.472313
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 4742
-
-
Svishchev, I.M.1
Kusalik, P.G.2
Wang, J.3
Boyd, R.J.4
-
20
-
-
0343867257
-
-
10.1063/1.1324711
-
H. Saint-Martin, J. Hernandez-Cobos, M. I. Bernal-Uruchurtu, I. Ortega-Blake, and H. J. C. Berendsen, J. Chem. Phys. 113, 10899 (2000). 10.1063/1.1324711
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 10899
-
-
Saint-Martin, H.1
Hernandez-Cobos, J.2
Bernal-Uruchurtu, M.I.3
Ortega-Blake, I.4
Berendsen, H.J.C.5
-
21
-
-
0035424605
-
-
10.1063/1.1376165
-
H. A. Stern, F. Rittner, B. J. Berne, and R. A. Friesner, J. Chem. Phys. 115, 2237 (2001). 10.1063/1.1376165
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 2237
-
-
Stern, H.A.1
Rittner, F.2
Berne, B.J.3
Friesner, R.A.4
-
23
-
-
84869140662
-
-
10.1002/and19003060312
-
P. Drude, Ann. Phys. 306, 566 (1900). 10.1002/andp.19003060312
-
(1900)
Ann. Phys.
, vol.306
, pp. 566
-
-
Drude, P.1
-
24
-
-
84979107435
-
-
10.1002/and19003081102
-
P. Drude, Ann. Phys. 308, 369 (1900). 10.1002/andp.19003081102
-
(1900)
Ann. Phys.
, vol.308
, pp. 369
-
-
Drude, P.1
-
27
-
-
30344482264
-
-
10.1016/j.cplett.2005.10.135
-
G. Lamoureux, E. Harder, I. V. Vorobyov, B. Roux, and A. D. MacKerell, Chem. Phys. Lett. 418, 245 (2006). 10.1016/j.cplett.2005.10.135
-
(2006)
Chem. Phys. Lett.
, vol.418
, pp. 245
-
-
Lamoureux, G.1
Harder, E.2
Vorobyov, I.V.3
Roux, B.4
MacKerell, A.D.5
-
29
-
-
77955368256
-
-
10.1021/ja103270w
-
H. Yu, C. L. Mazzanti, T. W. Whitfield, R. E. Koeppe, O. S. Andersen, and B. Roux, J. Am. Chem. Soc. 132, 10847 (2010). 10.1021/ja103270w
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 10847
-
-
Yu, H.1
Mazzanti, C.L.2
Whitfield, T.W.3
Koeppe, R.E.4
Andersen, O.S.5
Roux, B.6
-
30
-
-
78751688849
-
-
10.1021/jz101461d
-
W. Jiang, D. J. Hardy, J. C. Phillips, A. D. MacKerell, K. Schulten, and B. Roux, J. Phys. Chem. Lett. 2, 87 (2011). 10.1021/jz101461d
-
(2011)
J. Phys. Chem. Lett.
, vol.2
, pp. 87
-
-
Jiang, W.1
Hardy, D.J.2
Phillips, J.C.3
MacKerell, A.D.4
Schulten, K.5
Roux, B.6
-
33
-
-
33846185169
-
-
10.1021/ct600180x
-
E. Harder, V. M. Anisimov, I. V. Vorobyov, P. E. M. Lopes, S. Y. Noskov, A. D. MacKerell, and B. Roux, J. Chem. Theory Comput. 2, 1587 (2006). 10.1021/ct600180x
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 1587
-
-
Harder, E.1
Anisimov, V.M.2
Vorobyov, I.V.3
Lopes, P.E.M.4
Noskov, S.Y.5
MacKerell, A.D.6
Roux, B.7
-
35
-
-
75749150144
-
-
10.1063/1.3276460
-
R. Kumar, F. Wang, G. R. Jenness, and K. D. Jordan, J. Chem. Phys. 132, 014309 (2010). 10.1063/1.3276460
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 014309
-
-
Kumar, R.1
Wang, F.2
Jenness, G.R.3
Jordan, K.D.4
-
40
-
-
85172065369
-
-
See supplementary material E-JCPSA6-138-065302 for Figures S1-S5, Tables S1-S4, and the SA setu
-
See supplementary material http://dx.doi.org/10.1063/1.4774577 E-JCPSA6-138-065302 for Figures S1-S5, Tables S1-S4, and the SA setup.
-
-
-
-
42
-
-
34547555174
-
-
10.1063/1.2161201
-
T. Ichiye and M. Tan, J. Chem. Phys. 124, 134504 (2006). 10.1063/1.2161201
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 134504
-
-
Ichiye, T.1
Tan, M.2
-
45
-
-
33645934660
-
-
10.1080/00268978200100822
-
S. L. Carnie and G. N. Patey, Mol. Phys. 47, 1129 (1982). 10.1080/00268978200100822
-
(1982)
Mol. Phys.
, vol.47
, pp. 1129
-
-
Carnie, S.L.1
Patey, G.N.2
-
48
-
-
67650500988
-
-
10.1002/jcc.21287
-
B. R. Brooks, C. L. Brooks III, A. D. Mackerell, L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, and M. Karplus, J. Comput. Chem. 30, 1545 (2009). 10.1002/jcc.21287
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 1545
-
-
Brooks, B.R.1
Iii, L.B.C.2
MacKerell, Jr.A.D.3
Nilsson, L.4
Petrella, R.J.5
Roux, B.6
Won, Y.7
Archontis, G.8
Bartels, C.9
Boresch, S.10
Caflisch, A.11
Caves, L.12
Cui, Q.13
Dinner, A.R.14
Feig, M.15
Fischer, S.16
Gao, J.17
Hodoscek, M.18
Im, W.19
Kuczera, K.20
Lazaridis, T.21
Ma, J.22
Ovchinnikov, V.23
Paci, E.24
Pastor, R.W.25
Post, C.B.26
Pu, J.Z.27
Schaefer, M.28
Tidor, B.29
Venable, R.M.30
Woodcock, H.L.31
Wu, X.32
Yang, W.33
York, D.M.34
Karplus, M.35
more..
-
51
-
-
0023416976
-
-
10.1145/29380.29864
-
A. Corana, M. Marchesi, C. Martini, and S. Ridella, ACM Trans. Math. Softw. 13, 262 (1987). 10.1145/29380.29864
-
(1987)
ACM Trans. Math. Softw.
, vol.13
, pp. 262
-
-
Corana, A.1
Marchesi, M.2
Martini, C.3
Ridella, S.4
-
55
-
-
85172043581
-
-
R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, Austria, 2011)
-
R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, Austria, 2011).
-
-
-
-
58
-
-
0000026966
-
-
10.1080/00268979600100761
-
G. J. Martyna, M. E. Tuckerman, D. J. Tobias, and M. L. Klein, Mol. Phys. 87, 1117 (1996). 10.1080/00268979600100761
-
(1996)
Mol. Phys.
, vol.87
, pp. 1117
-
-
Martyna, G.J.1
Tuckerman, M.E.2
Tobias, D.J.3
Klein, M.L.4
-
59
-
-
0001538909
-
-
10.1103/PhysRevA.31.1695
-
W. G. Hoover, Phys. Rev. A 31, 1695 (1985). 10.1103/PhysRevA.31.1695
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695
-
-
Hoover, W.G.1
-
60
-
-
84943502952
-
-
10.1080/00268978400101201
-
S. Nosé, Mol. Phys. 52, 255 (1984). 10.1080/00268978400101201
-
(1984)
Mol. Phys.
, vol.52
, pp. 255
-
-
Nosé, S.1
-
61
-
-
6944251055
-
-
10.1103/PhysRev.46.618
-
C. Møller and M. S. Plesset, Phys. Rev. 46, 618 (1934). 10.1103/PhysRev.46.618
-
(1934)
Phys. Rev.
, vol.46
, pp. 618
-
-
Møller, C.1
Plesset, M.S.2
-
62
-
-
33746614482
-
-
10.1063/1.456153
-
J. T. H. Dunning, J. Chem. Phys. 90, 1007 (1989). 10.1063/1.456153
-
(1989)
J. Chem. Phys.
, vol.90
, pp. 1007
-
-
Dunning, J.T.H.1
-
63
-
-
15744375697
-
-
Gaussian Inc., Wallingford, CT.
-
M. J. Frisch, G. W. Trucks, H. B. Schlegel, GAUSSIAN 03, Revision C.02, Gaussian Inc., Wallingford, CT, 2003.
-
(2003)
GAUSSIAN 03, Revision C.02
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
-
65
-
-
84986519238
-
-
10.1002/jcc.540130812
-
S. Kumar, J. M. Rosenberg, D. Bouzida, R. H. Swendsen, and P. A. Kollman, J. Comput. Chem. 13, 1011 (1992). 10.1002/jcc.540130812
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
67
-
-
0037119289
-
-
10.1002/1439-7641(20020816)3:8<675::AID-CPHC675>3.0.CO;2-O
-
D. Sebastiani and M. Parrinello, ChemPhysChem 3, 675 (2002). 10.1002/1439-7641(20020816)3:8<675::AID-CPHC675>3.0.CO;2-O
-
(2002)
ChemPhysChem
, vol.3
, pp. 675
-
-
Sebastiani, D.1
Parrinello, M.2
-
69
-
-
4243553426
-
-
10.1103/PhysRevA.38.3098
-
A. D. Becke, Phys. Rev. A 38, 3098 (1988). 10.1103/PhysRevA.38.3098
-
(1988)
Phys. Rev. A
, vol.38
, pp. 3098
-
-
Becke, A.D.1
-
72
-
-
84872784941
-
-
Copyright IBM Cor 1990-2008 and Copyright MPI für Festkörperforschung Stuttgart 1997-2001.
-
CPMD, version 3.15, Copyright IBM Corp. 1990-2008 and Copyright MPI für Festkörperforschung Stuttgart 1997-2001, http://www.cpmd.org.
-
CPMD, version 3.15
-
-
-
74
-
-
19444361856
-
-
in, edited by E. W. Montroll and J. L. Lebowitz (North-Holland, Amsterdam).
-
F. H. Stillinger, in The Liquid State of Matter: Fluids Simple and Complex, edited by, E. W. Montroll, and, J. L. Lebowitz, (North-Holland, Amsterdam, 1982).
-
(1982)
The Liquid State of Matter: Fluids Simple and Complex
-
-
Stillinger, F.H.1
-
77
-
-
34047226258
-
-
10.1021/jp0663614
-
P. E. M. Lopes, G. Lamoureux, B. Roux, and A. D. MacKerell, J. Phys. Chem. B 111, 2873 (2007). 10.1021/jp0663614
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 2873
-
-
Lopes, P.E.M.1
Lamoureux, G.2
Roux, B.3
MacKerell, A.D.4
-
78
-
-
78049499009
-
-
10.1021/jp104865w
-
R. M. Shields, B. Temelso, K. A. Archer, T. E. Morrell, and G. C. Shields, J. Phys. Chem. A 114, 11725 (2010). 10.1021/jp104865w
-
(2010)
J. Phys. Chem. A
, vol.114
, pp. 11725
-
-
Shields, R.M.1
Temelso, B.2
Archer, K.A.3
Morrell, T.E.4
Shields, G.C.5
-
79
-
-
84861216974
-
-
10.1126/science.1220574
-
C. Perez, M. T. Muckle, D. P. Zaleski, N. A. Seifert, B. Temelso, G. C. Shields, Z. Kisiel, and B. H. Pate, Science 336, 897 (2012). 10.1126/science.1220574
-
(2012)
Science
, vol.336
, pp. 897
-
-
Perez, C.1
Muckle, M.T.2
Zaleski, D.P.3
Seifert, N.A.4
Temelso, B.5
Shields, G.C.6
Kisiel, Z.7
Pate, B.H.8
-
83
-
-
36649024356
-
-
10.1021/ct700098z
-
C. D. Wick, I. F. W. Kuo, C. J. Mundy, and L. X. Dang, J. Chem. Theory Comput. 3, 2002 (2007). 10.1021/ct700098z
-
(2007)
J. Chem. Theory Comput.
, vol.3
, pp. 2002
-
-
Wick, C.D.1
Kuo, I.F.W.2
Mundy, C.J.3
Dang, L.X.4
-
85
-
-
57849157822
-
-
10.1063/1.3027513
-
E. Harder and B. Roux, J. Chem. Phys. 129, 234706 (2008). 10.1063/1.3027513
-
(2008)
J. Chem. Phys.
, vol.129
, pp. 234706
-
-
Harder, E.1
Roux, B.2
-
86
-
-
36448998586
-
-
10.1063/1.461515
-
M. Sprik, J. Chem. Phys. 95, 6762 (1991). 10.1063/1.461515
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 6762
-
-
Sprik, M.1
-
88
-
-
33947491105
-
-
10.1021/j150334a007
-
P. V. Rysselberghe, J. Phys. Chem. 36, 1152 (1931). 10.1021/j150334a007
-
(1931)
J. Phys. Chem.
, vol.36
, pp. 1152
-
-
Rysselberghe, P.V.1
-
91
-
-
36849140266
-
-
10.1063/1.1740082
-
M. S. Green, J. Chem. Phys. 22, 398 (1954). 10.1063/1.1740082
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 398
-
-
Green, M.S.1
-
92
-
-
12344271673
-
-
10.1143/JPSJ.12.570
-
R. Kubo, J. Phys. Soc. Jpn. 12, 570 (1957). 10.1143/JPSJ.12.570
-
(1957)
J. Phys. Soc. Jpn.
, vol.12
, pp. 570
-
-
Kubo, R.1
-
93
-
-
84863329505
-
-
10.1088/0953-8984/24/28/284117
-
S. Tazi, A. Botan, M. Salanne, V. Marry, P. Turq, and B. Rotenberg, J. Phys.: Condens. Matter 24, 284117 (2012). 10.1088/0953-8984/24/28/284117
-
(2012)
J. Phys.: Condens. Matter
, vol.24
, pp. 284117
-
-
Tazi, S.1
Botan, A.2
Salanne, M.3
Marry, V.4
Turq, P.5
Rotenberg, B.6
-
94
-
-
84977586068
-
-
10.1002/and19053220806
-
A. Einstein, Ann. Phys. 322, 549 (1905). 10.1002/andp.19053220806
-
(1905)
Ann. Phys.
, vol.322
, pp. 549
-
-
Einstein, A.1
-
95
-
-
84861709367
-
-
10.1063/1.3697977
-
A. P. Markesteijn, R. Hartkamp, S. Luding, and J. Westerweel, J. Chem. Phys. 136, 134104 (2012). 10.1063/1.3697977
-
(2012)
J. Chem. Phys.
, vol.136
, pp. 134104
-
-
Markesteijn, A.P.1
Hartkamp, R.2
Luding, S.3
Westerweel, J.4
-
97
-
-
0034662899
-
-
10.1016/S0301-0104(00)00179-8
-
A. K. Soper, Chem. Phys. 258, 121 (2000). 10.1016/S0301-0104(00)00179-8
-
(2000)
Chem. Phys.
, vol.258
, pp. 121
-
-
Soper, A.K.1
-
98
-
-
36849111386
-
-
10.1063/1.1726676
-
J. C. Hindman, J. Chem. Phys. 44, 4582 (1966). 10.1063/1.1726676
-
(1966)
J. Chem. Phys.
, vol.44
, pp. 4582
-
-
Hindman, J.C.1
-
99
-
-
33846409804
-
-
10.1063/1.2424713
-
J. Kongsted, C. B. Nielsen, K. V. Mikkelsen, O. Christiansen, and K. Ruud, J. Chem. Phys. 126, 034510 (2007). 10.1063/1.2424713
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 034510
-
-
Kongsted, J.1
Nielsen, C.B.2
Mikkelsen, K.V.3
Christiansen, O.4
Ruud, K.5
-
100
-
-
0000951252
-
-
10.1021/jp9614658
-
S. E. Feller, R. W. Pastor, A. Rojnuckarin, S. Bogusz, and B. R. Brooks, J. Phys. Chem. 100, 17011 (1996). 10.1021/jp9614658
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 17011
-
-
Feller, S.E.1
Pastor, R.W.2
Rojnuckarin, A.3
Bogusz, S.4
Brooks, B.R.5
-
107
-
-
0344103144
-
-
10.1021/je60064a005
-
G. S. Kell, J. Chem. Eng. Data 20, 97 (1975). 10.1021/je60064a005
-
(1975)
J. Chem. Eng. Data
, vol.20
, pp. 97
-
-
Kell, G.S.1
-
109
-
-
84953658885
-
-
10.1063/1.555977
-
D. P. Fernandez, Y. Mulev, A. R. H. Goodwin, and J. M. H. L. Sengers, J. Phys. Chem. Ref. Data 24, 33 (1995). 10.1063/1.555977
-
(1995)
J. Phys. Chem. Ref. Data
, vol.24
, pp. 33
-
-
Fernandez, D.P.1
Mulev, Y.2
Goodwin, A.R.H.3
Sengers, J.M.H.L.4
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