Shape as a determinant of membrane protein cluster formation

Soft Matter

Volumn 8, Issue 47, 2012, Pages 11905-11910

  Morozova, Diana ^a   Weiss, Matthias ^a   Guigas, Gernot ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BI-LAYER; CELLULAR PROCESS; CLUSTER FORMATIONS; DIFFERENT GEOMETRY; HYDROPHOBIC DOMAINS; HYDROPHOBIC MISMATCH; MEMBRANE PROTEINS; MESOSCOPICS; POTENTIAL OF MEAN FORCE; PROTEIN INTERACTION; PROTEIN SORTING;

BIOLOGICAL MEMBRANES; HYDROPHOBICITY; OLIGOMERIZATION; OLIGOMERS; SIGNAL TRANSDUCTION;

PROTEINS;

EID: 84872720538     PISSN: 1744683X     EISSN: 17446848     Source Type: Journal    
DOI: 10.1039/c2sm26720a     Document Type: Article

References (34)

1. O. G. Mouritsen M. Bloom Mattress model of lipid-protein interactions in membranes Biophys. J. 1984 46 2 141 153
2. N. Dan P. Pincus S. A. Safran Membrane induced interactions between inclusions Langmuir 1993 9 2768
3. N. Dan A. Berman P. Pincus S. A. Safran Membrane induced interactions between inclusions J. Phys. II 1994 4 1713
4. C. Nielsen M. Goulian O. S. Andersen Energetics of inclusion-induced bilayer deformations Biophys. J. 1998 74 1966 1983
5. P. Lagüe M. J. Zuckermann B. Roux Lipid-mediated interactions between membrane proteins: a theoretical study based on integral equations Biophys. J. 2000 79 2867
6. P. Lagüe M. J. Zuckermann B. Roux Lipid-mediated interactions between intrinsic membrane proteins: dependence on protein size and lipid composition Biophys. J. 2001 81 276
7. U. Schmidt G. Guigas M. Weiss Cluster formation of transmembrane proteins due to hydrophobic mismatching Phys. Rev. Lett. 2008 101 128104
8. T. Gil M. C. Sabra J. H. Ipsen O. G. Mouritsen Wetting and capillary condensation as means of protein organization in membranes Biophys. J. 1997 73 1728 1741
9. M. Goulian R. Bruinsma P. Pincus Long-range forces in heterogeneous fluid membranes Europhys. Lett. 1993 22 145
10. B. J. Reynwar M. Deserno Membrane composition-mediated protein-protein interactions Biointerphases 2009 3 FA117
11. P. A. Kralchevsky K. Nagayama Capillary interactions between particles bound to interfaces, liquid films and biomembranes Adv. Colloid Interface Sci. 2000 85 145
12. K. M. Palmer M. Goulian P. Pincus Fluctuation-induced forces in stacked fluid membranes J. Phys. II 1994 4 805
13. J. M. Park T. C. Lubensky Interactions between membrane inclusions on fluctuating membranes J. Phys. I 1996 6 1217
14. T. Sintes A. Baumgaertner Protein attraction in membranes induces by lipid fluctuations Biophys. J. 1997 73 2251
15. T. R. Weikl Fluctuation-induced aggregation of rigid membrane inclusions Europhys. Lett. 2001 54 547
16. B. A. Lewis D. Engelman Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles J. Mol. Biol. 1983 166 211 217
17. M. R. R. De Planque J. A. Killian Protein-lipid interactions studied with designed transmembrane peptides: role of hydrophobic matching and interfacial anchoring (review) Mol. Membr. Biol. 2003 20 271
18. A. V. Botelho T. Huber T. P. Sakmar M. F. Brown Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes Biophys. J. 2006 91 12 4464 4477
19. Y. Yano K. Matsuzaki Measurement of thermodynamic parameters for hydrophobic mismatch 1: self-association of a transmembrane helix Biochemistry 2006 45 3370
20. F. de Meyer M. Venturoli M. Smit Molecular simulations of lipid-mediated protein-protein interactions Biophys. J. 1851 95 2008
21. B. West F. L. H. Brown F. Schmid Membrane-protein interactions in a generic coarse-grained model for lipid bilayers Biophys. J. 2009 96 101
22. D. Morozova M. Weiss On the role of acylation of transmembrane proteins Biophys. J. 2010 98 800 804
23. D. Morozova G. Guigas M. Weiss Dynamic structure formation of peripheral membrane proteins PLoS Comput. Biol. 2011 7 e1002067
24. M. O. Jensen O. G. Mouritsen Lipids do influence protein function-the hydrophobic matching hypothesis revisited Biochim. Biophys. Acta 2004 1666 1-2 205 226
25. S. May A. Ben-Shaul Molecular theory of lipid-protein interaction and the l-hii transition Biophys. J. 1999 76 751
26. J.-B. Fournier Coupling between membrane tilt-difference and dilation: a new "ripple" instability and multiple crystalline inclusions phases Europhys. Lett. 1998 43 725
27. R. D. Groot P. Warren Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation J. Chem. Phys. 1997 107 4423 4435
28. P. Nikunen M. Karttunen I. Vattulainen How would you integrate the equations of motion in dissipative particle dynamics simulations? Comput. Phys. Commun. 2003 153 407 423
29. J. C. Shillcock R. Lipowsky Equilibrium structure and lateral stress distribution of amphiphilic bilayers from dissipative particle dynamics simulations J. Chem. Phys. 2002 117 5048 5061
30. M. Laradji P. B. S. Kumar Dynamics of domain growth in self-assembled fluid vesicles Phys. Rev. Lett. 2004 93 198105
31. B. Roux The calculation of the potential of mean force using computer simulations Comput. Phys. Commun. 1995 91 275
32. M. Souaille B. Roux Extension to the weighted histogram analysis method: combining umbrella sampling with free energy calculations Comput. Phys. Commun. 2001 135 40
33. A. F. Jakobsen Constant-pressure and constant-surface tension simulations in dissipative particle dynamics J. Chem. Phys. 2005 122 124901
34. T. A. Harroun W. T. Heller T. M. Weiss L. Yang H. W. Huang Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin Biophys. J. 1999 76 937 945