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Volumn 78, Issue , 2013, Pages 389-397

Analysis of human serum phosphopeptidome by a focused database searching strategy

Author keywords

Focused database; Human serum; Phosphopeptidome; Ti (IV) MCM 41

Indexed keywords

PHOSPHOPEPTIDE; PHOSPHOPEPTIDOME; PROTEOME; TITANIUM DIOXIDE; UNCLASSIFIED DRUG;

EID: 84872680042     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.10.006     Document Type: Article
Times cited : (13)

References (31)
  • 1
    • 23944470664 scopus 로고    scopus 로고
    • Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display
    • Tammen H., Schulte I., Hess R., Menzel C., Kellmann M., Mohring T., et al. Peptidomic analysis of human blood specimens: comparison between plasma specimens and serum by differential peptide display. Proteomics 2005, 5:3414-3422.
    • (2005) Proteomics , vol.5 , pp. 3414-3422
    • Tammen, H.1    Schulte, I.2    Hess, R.3    Menzel, C.4    Kellmann, M.5    Mohring, T.6
  • 3
    • 33745005452 scopus 로고    scopus 로고
    • Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer
    • Zheng X.Y., Baker H., Hancock W.S. Analysis of the low molecular weight serum peptidome using ultrafiltration and a hybrid ion trap-Fourier transform mass spectrometer. J Chromatogr A 2006, 1120:173-184.
    • (2006) J Chromatogr A , vol.1120 , pp. 173-184
    • Zheng, X.Y.1    Baker, H.2    Hancock, W.S.3
  • 6
    • 31044448275 scopus 로고    scopus 로고
    • Serum peptidome for cancer detection: spinning biologic trash into diagnostic gold
    • Liotta L.A., Petricoin E.F. Serum peptidome for cancer detection: spinning biologic trash into diagnostic gold. J Clin Invest 2006, 116:26-30.
    • (2006) J Clin Invest , vol.116 , pp. 26-30
    • Liotta, L.A.1    Petricoin, E.F.2
  • 7
    • 33845267469 scopus 로고    scopus 로고
    • The blood peptidome: a higher dimension of information content for cancer biomarker discovery
    • Petricoin E.F., Belluco C., Araujo R.P., Liotta L.A. The blood peptidome: a higher dimension of information content for cancer biomarker discovery. Nat Rev Cancer 2006, 6:961-967.
    • (2006) Nat Rev Cancer , vol.6 , pp. 961-967
    • Petricoin, E.F.1    Belluco, C.2    Araujo, R.P.3    Liotta, L.A.4
  • 8
    • 0034614490 scopus 로고    scopus 로고
    • Signaling-2000 and beyond
    • Hunter T. Signaling-2000 and beyond. Cell 2000, 100:113-127.
    • (2000) Cell , vol.100 , pp. 113-127
    • Hunter, T.1
  • 10
    • 76149133112 scopus 로고    scopus 로고
    • Characterization of the human plasma phosphoproteome using linear ion trap mass spectrometry and multiple search engines
    • Carrascal M., Gay M., Ovelleiro D., Casas V., Gelpí E., Abian J. Characterization of the human plasma phosphoproteome using linear ion trap mass spectrometry and multiple search engines. J Proteome Res 2010, 9:876-884.
    • (2010) J Proteome Res , vol.9 , pp. 876-884
    • Carrascal, M.1    Gay, M.2    Ovelleiro, D.3    Casas, V.4    Gelpí, E.5    Abian, J.6
  • 11
    • 79952140710 scopus 로고    scopus 로고
    • 2 for the in-depth analysis of the serum proteome and phosphoproteome: application to clinical sera derived from humans with benign prostate hyperplasia
    • 2 for the in-depth analysis of the serum proteome and phosphoproteome: application to clinical sera derived from humans with benign prostate hyperplasia. Anal Chem 2011, 83(3):708-718.
    • (2011) Anal Chem , vol.83 , Issue.3 , pp. 708-718
    • Garbis, S.D.1    Roumeliotis, T.I.2    Tyritzis, S.I.3    Zorpas, K.M.4    Pavlakis, K.5    Constantinides, C.A.6
  • 12
    • 52449093014 scopus 로고    scopus 로고
    • Identification of free phosphopeptides in different biological fluids by a mass spectrometry approach
    • Cirulli C., Chiappetta G., Marino G., Mauri P., Amoresano A. Identification of free phosphopeptides in different biological fluids by a mass spectrometry approach. Anal Bioanal Chem 2008, 392:147-159.
    • (2008) Anal Bioanal Chem , vol.392 , pp. 147-159
    • Cirulli, C.1    Chiappetta, G.2    Marino, G.3    Mauri, P.4    Amoresano, A.5
  • 13
    • 45549094497 scopus 로고    scopus 로고
    • Cerium ion-chelated magnetic silica microspheres for enrichment and direct determination of phosphopeptides by matrix-assisted laser desorption ionization mass spectrometry
    • Li Y., Qi D.W., Deng C.H., Yang P.Y., Zhang X.M. Cerium ion-chelated magnetic silica microspheres for enrichment and direct determination of phosphopeptides by matrix-assisted laser desorption ionization mass spectrometry. J Proteome Res 2008, 7:1767-1777.
    • (2008) J Proteome Res , vol.7 , pp. 1767-1777
    • Li, Y.1    Qi, D.W.2    Deng, C.H.3    Yang, P.Y.4    Zhang, X.M.5
  • 14
    • 58149464332 scopus 로고    scopus 로고
    • Profiling of endogenous serum phosphorylated peptides by titanium (iv) immobilized mesoporous silica particles enrichment and MALDI-TOFMS detection
    • Hu L.H., Zhou H.J., Li Y.H., Sun S.T., Guo L.H., Ye M.L., et al. Profiling of endogenous serum phosphorylated peptides by titanium (iv) immobilized mesoporous silica particles enrichment and MALDI-TOFMS detection. Anal Chem 2009, 81:94-104.
    • (2009) Anal Chem , vol.81 , pp. 94-104
    • Hu, L.H.1    Zhou, H.J.2    Li, Y.H.3    Sun, S.T.4    Guo, L.H.5    Ye, M.L.6
  • 15
    • 34548658287 scopus 로고    scopus 로고
    • PepBank-a database of peptides based on sequence text mining and public peptide data sources
    • Shtatland T., Guettler D., Kossodo M., Pivovarov M., Weissleder R. PepBank-a database of peptides based on sequence text mining and public peptide data sources. BMC Bioinformatics 2007, 8:280.
    • (2007) BMC Bioinformatics , vol.8 , pp. 280
    • Shtatland, T.1    Guettler, D.2    Kossodo, M.3    Pivovarov, M.4    Weissleder, R.5
  • 16
    • 51649096674 scopus 로고    scopus 로고
    • Validation of endogenous peptide identifications using a database of tandem mass spectra
    • Fälth M., Svensson M., Nilsson A., Sköld K., Fenyö D., Andren P.E. Validation of endogenous peptide identifications using a database of tandem mass spectra. J Proteome Res 2008, 7:3049-3053.
    • (2008) J Proteome Res , vol.7 , pp. 3049-3053
    • Fälth, M.1    Svensson, M.2    Nilsson, A.3    Sköld, K.4    Fenyö, D.5    Andren, P.E.6
  • 19
    • 75749099733 scopus 로고    scopus 로고
    • Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides
    • Song C.X., Ye M.L., Han G.H., Jiang X.N., Wang F.J., Yu Z.Y., et al. Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides. Anal Chem 2010, 82:53-56.
    • (2010) Anal Chem , vol.82 , pp. 53-56
    • Song, C.X.1    Ye, M.L.2    Han, G.H.3    Jiang, X.N.4    Wang, F.J.5    Yu, Z.Y.6
  • 20
    • 34548590391 scopus 로고    scopus 로고
    • Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis
    • Wang F.J., Dong J., Jiang X.G., Ye M.L., Zou H.F. Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis. Anal Chem 2007, 79:6599-6606.
    • (2007) Anal Chem , vol.79 , pp. 6599-6606
    • Wang, F.J.1    Dong, J.2    Jiang, X.G.3    Ye, M.L.4    Zou, H.F.5
  • 21
    • 66649115984 scopus 로고    scopus 로고
    • Selective on-line serum peptide extraction and multidimensional separation by coupling a restricted-access material-based capillary trap column with nanoliquid chromatography-tandem mass spectrometry
    • Hu L.H., Boos K.S., Ye M.L., Wu R.A., Zou H.F. Selective on-line serum peptide extraction and multidimensional separation by coupling a restricted-access material-based capillary trap column with nanoliquid chromatography-tandem mass spectrometry. J Chromatogr A 2009, 1216:5377-5384.
    • (2009) J Chromatogr A , vol.1216 , pp. 5377-5384
    • Hu, L.H.1    Boos, K.S.2    Ye, M.L.3    Wu, R.A.4    Zou, H.F.5
  • 22
    • 55249104113 scopus 로고    scopus 로고
    • Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis
    • Zhou H.J., Ye M.L., Dong J., Han G.H., Jiang X.N., Wu R.A., et al. Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis. J Proteome Res 2008, 7:3957-3967.
    • (2008) J Proteome Res , vol.7 , pp. 3957-3967
    • Zhou, H.J.1    Ye, M.L.2    Dong, J.3    Han, G.H.4    Jiang, X.N.5    Wu, R.A.6
  • 23
    • 80054711214 scopus 로고    scopus 로고
    • Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach
    • Song C.X., Wang F.J., Ye M.L., Cheng K., Chen R., Zhu J., et al. Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach. Anal Chem 2011, 83:7755-7762.
    • (2011) Anal Chem , vol.83 , pp. 7755-7762
    • Song, C.X.1    Wang, F.J.2    Ye, M.L.3    Cheng, K.4    Chen, R.5    Zhu, J.6
  • 24
    • 30344451098 scopus 로고    scopus 로고
    • Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
    • Gilar M., Olivova P., Daly A.E., Gebler J.C. Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J Sep Sci 2005, 28:1694-1703.
    • (2005) J Sep Sci , vol.28 , pp. 1694-1703
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 25
    • 33845388969 scopus 로고    scopus 로고
    • Rat neuropeptidomics by LC-MS/MS and MALDI-FTMS: enhanced dissection and extraction techniques coupled with 2D RP-RP HPLC
    • Dowell J.A., Vander Heyden W., Li L. Rat neuropeptidomics by LC-MS/MS and MALDI-FTMS: enhanced dissection and extraction techniques coupled with 2D RP-RP HPLC. J Proteome Res 2006, 5:3368-3375.
    • (2006) J Proteome Res , vol.5 , pp. 3368-3375
    • Dowell, J.A.1    Vander Heyden, W.2    Li, L.3
  • 27
    • 67649213067 scopus 로고    scopus 로고
    • Phosphopeptide fragmentation and analysis by mass spectrometry
    • Boersema P.J., Mohammed S., Heck A.J. Phosphopeptide fragmentation and analysis by mass spectrometry. J Mass Spectrom 2009, 44:861-878.
    • (2009) J Mass Spectrom , vol.44 , pp. 861-878
    • Boersema, P.J.1    Mohammed, S.2    Heck, A.J.3
  • 28
    • 80054038843 scopus 로고    scopus 로고
    • Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment
    • Zhou H.J., Low T.Y., Hennrich M.L., Toorn H., Schwend T., Zou H.F., et al. Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment. Mol Cell Proteomics 2011, 10:1-14.
    • (2011) Mol Cell Proteomics , vol.10 , pp. 1-14
    • Zhou, H.J.1    Low, T.Y.2    Hennrich, M.L.3    Toorn, H.4    Schwend, T.5    Zou, H.F.6
  • 29
    • 33947575134 scopus 로고    scopus 로고
    • Enhancement of the efficiency of phosphoproteomic identification by removing phosphates after phosphopeptide enrichment
    • Ishihama Y., Wei F.Y., Aoshima K., Sato T., Kuromitsu J., Oda Y. Enhancement of the efficiency of phosphoproteomic identification by removing phosphates after phosphopeptide enrichment. J Proteome Res 2007, 6:1139-1144.
    • (2007) J Proteome Res , vol.6 , pp. 1139-1144
    • Ishihama, Y.1    Wei, F.Y.2    Aoshima, K.3    Sato, T.4    Kuromitsu, J.5    Oda, Y.6
  • 30
    • 67650725815 scopus 로고    scopus 로고
    • Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search
    • Han G.H., Ye M.L., Jiang X.N., Chen R., Ren J., Yu Xue, et al. Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search. Anal Chem 2009, 81:5794-5805.
    • (2009) Anal Chem , vol.81 , pp. 5794-5805
    • Han, G.H.1    Ye, M.L.2    Jiang, X.N.3    Chen, R.4    Ren, J.5    Yu, X.6
  • 31
    • 20844448187 scopus 로고    scopus 로고
    • Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery
    • Koomen J.M., Li D.H., Xiao L.C., Liu T.C., Coombes K.R., Abbruzzese J., et al. Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery. J Proteome Res 2005, 4:972-981.
    • (2005) J Proteome Res , vol.4 , pp. 972-981
    • Koomen, J.M.1    Li, D.H.2    Xiao, L.C.3    Liu, T.C.4    Coombes, K.R.5    Abbruzzese, J.6


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