A comparative proteomic analysis provides insights into pigment biosynthesis in brown color fiber

Journal of Proteomics

Volumn 78, Issue , 2013, Pages 374-388

  Li, Yan Jun ^a   Zhang, Xin Yu ^a   Wang, Fu Xin ^b   Yang, Chun Lin ^b   Liu, Feng ^a   Xia, Gui Xian ^b   Sun, Jie ^a  

^a SHIHEZI UNIVERSITY   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

Cotton fiber; Flavonoid biosynthesis; Naturally colored cotton; Pigment; Proteomics

Indexed keywords

ACTIN; ANNEXIN; ASCORBATE PEROXIDASE; CYTOSOL AMINOPEPTIDASE; FLAVONOID; HEAT SHOCK PROTEIN; PIGMENT; PROANTHOCYANIDIN; PROTEIN PRECURSOR; PROTEOME; STEROID 5BETA REDUCTASE; SUPEROXIDE DISMUTASE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; BROWN COTTON FIBER; CARBOHYDRATE METABOLISM; COLOR; CONTROLLED STUDY; COTTON; CYTOSKELETON; ENERGY METABOLISM; FLOWERING; GLYCOLYSIS; HOMEOSTASIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NEAR ISOGENIC LINE; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION STATE; PLANT DEVELOPMENT; PLANT METABOLISM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN METABOLISM; PROTEOMICS; TIME OF FLIGHT MASS SPECTROMETRY;

CARBOHYDRATE METABOLISM; COTTON FIBER; ENERGY METABOLISM; FLAVONOIDS; GOSSYPIUM; PIGMENTS, BIOLOGICAL; PLANT PROTEINS; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

GOSSYPIUM HIRSUTUM;

EID: 84872675324     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.10.005     Document Type: Article

References (58)

1. Yatsu L.Y., Espelie K.E., Kolattukudy P.E. Ultrastructural and chemical evidence that the cell wall of green cotton fiber is suberized. Plant Physiol 1983, 73:521-524.
2. Dutt Y., Wang X.D., Zhu Y.G., Li Y.Y. Breeding for high yield and fibre quality in colored cotton. Plant Breed 2004, 123:145-151.
3. Murthy M.S.S. Never say dye: the story of coloured cotton. Resinance 2001, 11:29-35.
4. Dickerson D.K., Lane E.F., Rodriguez D.F. Naturally colored cotton: resistance to changes in color and durability when refurbished with selected laundry aids 1999, California Agricultural Technology Institute, Fresno.
5. Hua S.J., Wang X.D., Yuan S.N., Shao M.Y., Zhao X.Q., Zhu S.J., et al. Characterization of pigmentation and cellulose synthesis in colored cotton fibers. Crop Sci 2007, 47:1540-1546.
6. Qiu X.M., Zhou W.L. Study on the genetics and development of fiber pigments and color deviation after wetting process of naturally colored cotton. Agric Sci China 2002, 35:610-615.
7. Hua S.J., Yuan S.N., Shamsi I.H., Zhao X.Q., Zhang X.Q., Liu Y.X., et al. A comparison of three isolines of cotton differing in fiber color for yield, quality, and photosynthesis. Crop Sci 2009, 49:983-989.
8. Xiao Y.H., Zhang Z.S., Yin M.H., Luo M., Li X.B., Hou L., et al. Cotton flavonoid structural genes related to the pigmentation in brown fibers. Biochem Biophys Res Commun 2007, 358:73-78.
9. Sun Y., An S., Henrich V.C., Sun X., Song Q. Proteomic identification of PKC-mediated expression of 2DE-induced protein in Drosophila melanogaster. J Proteome Res 2007, 6:4478-4488.
10. Turley R.B., Ferguson D.L. Changes of ovule proteins during early fiber development and a normal and a fiberless line of cotton (Gossypium hirsutum L.). J Plant Physiol 1996, 149:695-702.
11. Zhao P.M., Wang L.L., Han L.B., Wang J., Yao Y., Wang H.Y., et al. Proteomic identification of differentially expressed proteins in the ligon lintless mutant of upland cotton (Gossypium hirsutum L.). J Proteome Res 2010, 9:1076-1087.
12. Yang Y.W., Bian S.M., Yao Y., Liu J.Y. Comparative proteomic analysis provides new insights into the fiber elongating process in cotton. J Proteome Res 2007, 7:4623-4637.
13. Pang C.Y., Wang H., Pang Y., Xu C., Jiao Y., Qin Y.M., et al. Comparative proteomics indicates that biosynthesis of pectin precursors is important for cotton fiber and Arabidopsis root hair elongation. Mol Cell Proteomics 2010, 9:2019-2033.
14. Tang W., Deng Z., Oses-Prieto J.A., Suzuki N. Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE. Mol Cell Proteomics 2008, 7:728-738.
15. Liu K., Han M., Zhang C., Yao L., Sun J., Zhang T. Comparative proteomic analysis reveals the mechanisms governing cotton fiber differentiation and initiation. J Proteomics 2012, 75:845-856.
16. Zheng M., Wang Y., Liu K., Shu H., Zhou Z. Protein expression changes during cotton fiber elongation in response to low temperature stress. J Plant Physiol 2012, 169:399-409.
17. Wilkins T.A., Arpat A.B. The cotton fiber transcriptome. Physiol Plant 2005, 124:295-300.
18. Hovav R., Udall J.A., Hovav E., Rapp R., Flagel L., Wendel J.F. A majority of cotton genes are expressed in single-celled fiber. Plata 2008, 227:319-329.
19. Rapp R.A., Haigler C.H., Flagel L., Hovav R.H., Udall J.A., Wendel J.F. Gene expression in developing fibers of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. BMC Biol 2010, 8:139-153.
20. Basra A.S., Malik C.P. Development of the cotton fiber. Int Rev Cytol 1984, 89:65-113.
21. Kim H.J., Triplett B.A. Cotton fiber growth in planta and in vitro: models for plant cell elongation and cell wall biogenesis. Plant Physiol 2001, 127:1361-1366.
22. Feng H.J., Sun J.L., Wang J., Jia Y.H., Zhang X.Y., Pang B.Y., et al. Genetic effects and heterosis of the fibre colour and quality of brown cotton (Gossypium hirsutum). Plant Breed 2011, 130:450-456.
23. Yao Y., Yang Y.W., Liu J.Y. An efficient protein for proteomic analysis of developing cotton fiber. Electrophoresis 2006, 27:4559-4569.
24. Wan C.Y., Wilkins T.A. A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.). Anal Biochem 1994, 223:7-12.
25. Pradet-Balade B., Boulme F., Beug H., Mullner E.W., Garcia-Sanz J.A. Translation control: bridging the gap between genomics and proteomics. Trends Biochem Sci 2001, 26:225-229.
26. Greenbaum D., Colangelo C., Williams K., Gerstein M. Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 2003, 4:117.
27. Winkel-Shirley B. Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol 2001, 126:485-493.
28. Grotewold E. The Science of Flavonoids 2006, Springer, New York.
29. Tanaka Y., Sasaki N., Ohmiya A. Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids. Plant J 2008, 54:733-749.
30. Anterola A.M., Lewis N.G. Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity. Phytochemistry 2002, 61:221-294.
31. Besseau S., Hoffmann L., Geoffroy P., Lapierre C., Pollet B., Legrand M. Flavonoid accumulation in Arabidopsis repressed in lignin synthesis affects auxin transport and plant growth. Plant Cell 2007, 19:148-162.
32. Vander Mijnsbrugge K., Beeckman H., De Rycke R., Van Montagu M., Engler G., Boerjan W. Phenylcoumaran benzylic ether reductase, a prominent poplar xylem protein, is strongly associated with phenylpropanoid biosynthesis in lignifying cells. Planta 2000, 211:502-509.
33. Fan L., Shi W.J., Hu W.R., Hao X.Y., Wang D.M., Yuan H., et al. Molecular and biochemical evidence for phenylpropanoid synthesis and presence of wall-linked phenolics in cotton fibers. J Integr Plant Biol 2009, 51:626-637.
34. Li X.B., Fan X.P., Wang X.L., Cai L., Yang W.C. The cotton ACTIN1 gene is functionally expressed in fibers and participates in fiber elongation. Plant Cell 2005, 17:859-875.
35. Mortimer J.C., Laohavisit A., Macpherson N., Webb A., Brownlee C., Battey N.H., et al. Annexins: multifunctional components of growth and adaptation. J Exp Bot 2008, 59:533-544.
36. Konopka-Postupolska D. Annexins: putative linkers in dynamic membrane-cytoskeleton interactions in plant cells. Protoplasma 2007, 230:203-215.
37. Young J.C., Agashe V.R., Siegers K., Hartl F.U. Pathways of chaperone-mediated protein folding in the cytosol. Nat Rev Mol Cell Biol 2004, 5:781-791.
38. Sung D.Y., Guy C.L. Physiological and molecular assessment of altered expression of Hsc70-1 in Arabidopsis. Evidence for pleiotropic consequences. Plant Physiol 2003, 132:979-987.
39. Sung D.Y., Kaplan F., Guy C.L. Plant Hsp70 molecular chaperones: protein structure, gene family, expression and function. Physiol Plant 2001, 113:443-451.
40. Lopez-Ribot J.L., Chaffin W.L. Members of the Hsp70 family of proteins in the cell wall of Saccharomyces cerevisiae. J Bacteriol 1996, 178:4724-4726.
41. Potikha T.S., Collins C.C., Johnson D.I., Delmer D.P., Levine A. The involvement of hydrogen peroxide in the differentiation of secondary walls in cotton fibers. Plant Physiol 1999, 119:849-858.
42. Kim H.J., Kato N., Kim S., Triplett B. Cu/Zn superoxide dismutases in developing cotton fibers: evidence for an extracellular form. Planta 2008, 228:281-292.
43. 2 and ethylene is involved in cotton fiber cell elongation by modulating ROS homeostasis. Plant Signal Behav 2008, 3:194-196.
44. Li H.B., Qin Y.M., Pang Y., Song W.Q., Mei W.Q., Zhu Y.X. A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development. New Phytol 2007, 175:462-471.
45. Kim H.J., Triplett B. Involvement of extracellular Cu/Zn superoxide dismutase in cotton fiber primary and secondary cell wall biosynthesis. Plant Signal Behav 2008, 3:1119-1121.
46. Miliko M., Fowler J.H., Walling L.L. Leucine aminopeptidases: diversity in structure and function. Biol Chem 2006, 387:1535-1544.
47. Walling L.L. Recycling or regulation? The role of N-terminal modifying enzymes. Curr Opin Plant Biol 2006, 9:227-233.
48. Chiang P.K., Gordon R.K., Tal J., Zeng G.C., Dotor B.P., Pardhasaradhi K., et al. S-Adenosylmethionine and methylation. FASEB J 1996, 10:471-480.
49. Radchuk V.V., Sreenivasulu N., Radcbuk R.L., Wobus U., Weschke W. The methylation cycle and its possible functions in barley endosperm development. Plant Mol Biol 2005, 59:289-307.
50. Buer C.S., Sukumar P., Muday G.K. Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol 2006, 140:1384-1396.
51. Whale S.K., Singh Z. Endogenous ethylene and color development in the skin of 'Pink Lady' apple. J Am Soc Hortic Sci 2007, 132:20-28.
52. Lei Z., Elmer A.M., Watson B.S., Dixon R.A., Mendes P.J., Sumner L.W. A two-dimensional electrophoresis proteomic reference map and systematic identification of 1367 proteins from a cell suspension culture of the model legume Medicago truncatula. Mol Cell Proteomics 2005, 4:1812-1825.
53. Negri A.S., Prinsi B., Rossoni M., Failla O., Scienza A., Cocucci M., et al. Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening. BMC Genomics 2008, 9:378.
54. Coumans J.V., Poljak A., Raftery M.J., Backhouse D., Pereg-Gerk L. Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola. Proteomics 2009, 9:335-349.
55. Schluter H., Apweiler R., Holzhutter H.G., Jungblut P.R. Finding one's way in proteomics: a protein species nomenclature. Chem Cent J 2009, 3:11.
56. Mayer M.P., Bukau B. Hsp 70 chaperones: cellular functions and molecular mechanism. Cell Mol Life Sci 2005, 62:670-684.
57. Okkels L.M., Muller E.C., Schmid M., Rosenkrands I., Kaufmann S.H., Andersen P., et al. CFP 10 discriminates between nonacetylated and acetylated ESAT-6 of Mycobacterium tuberculosis by differential interaction. Proteomics 2004, 4:2954-2960.
58. Klose J., Kobaiz U. Two-dimensional electrophoresis of proteins: an updated protocol and implications for a functional analysis of the genome. Electrophoresis 1995, 16:1034-1059.