-
1
-
-
20444405643
-
Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans
-
Barreto, M., Jedlicki, E., & Holmes, D. S. (2005). Identification of a gene cluster for the formation of extracellular polysaccharide precursors in the chemolithoautotroph Acidithiobacillus ferrooxidans. Applied and Environmental Microbiology, 71(6), 2902-2909.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.6
, pp. 2902-2909
-
-
Barreto, M.1
Jedlicki, E.2
Holmes, D.S.3
-
2
-
-
78149359126
-
Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
-
Cárdenas, J. P., Valdés, J., Quatrini, R., Duarte, F., & Holmes, D. S. (2010). Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms. Applied and Environmental Microbiology, 88(3), 605-620.
-
(2010)
Applied and Environmental Microbiology
, vol.88
, Issue.3
, pp. 605-620
-
-
Cárdenas, J.P.1
Valdés, J.2
Quatrini, R.3
Duarte, F.4
Holmes, D.S.5
-
4
-
-
37049242479
-
The role of microorganisms in acid mine drainage: a preliminary report
-
Colmer, A. R., & Hinkle, M. E. (1947). The role of microorganisms in acid mine drainage: a preliminary report. Science, 106, 253-256.
-
(1947)
Science
, vol.106
, pp. 253-256
-
-
Colmer, A.R.1
Hinkle, M.E.2
-
5
-
-
0024364050
-
Polyamines of sulfur-dependent archaebacteria and their role in protein synthesis
-
Friedman, S. M., & Oshima, T. (1989). Polyamines of sulfur-dependent archaebacteria and their role in protein synthesis. Journal of Biochemistry, 105, 1030-1033.
-
(1989)
Journal of Biochemistry
, vol.105
, pp. 1030-1033
-
-
Friedman, S.M.1
Oshima, T.2
-
6
-
-
0029155041
-
Decrease in cell viability due to the accumulation of spermidine in spermidine acetyltransferase-deficient mutant of Escherichia coli
-
Fukuchi, J., Kashiwagi, K., Yamagishi, M., Ishihama, A., & Igarashi, K. (1995). Decrease in cell viability due to the accumulation of spermidine in spermidine acetyltransferase-deficient mutant of Escherichia coli. The Journal of Biological Chemistry, 270, 18831-18835.
-
(1995)
The Journal of Biological Chemistry
, vol.270
, pp. 18831-18835
-
-
Fukuchi, J.1
Kashiwagi, K.2
Yamagishi, M.3
Ishihama, A.4
Igarashi, K.5
-
7
-
-
0031866420
-
Importance of extracellular polymeric substances from Thiobacillus ferrooxidans for bioleaching
-
Gehrke, T., Telegdi, J., Thierry, D., & Sand, W. (1998). Importance of extracellular polymeric substances from Thiobacillus ferrooxidans for bioleaching. Applied and Environmental Microbiology, 64(7), 2743-2747.
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.7
, pp. 2743-2747
-
-
Gehrke, T.1
Telegdi, J.2
Thierry, D.3
Sand, W.4
-
8
-
-
0036062747
-
Vibrio cholerae CytR is a repressor of biofilm development
-
Haugo, A. J., & Watnick, P. I. (2002). Vibrio cholerae CytR is a repressor of biofilm development. Molecular Microbiology, 45, 471-483.
-
(2002)
Molecular Microbiology
, vol.45
, pp. 471-483
-
-
Haugo, A.J.1
Watnick, P.I.2
-
9
-
-
38649122069
-
Identification of a spermidine excretion protein complex (MdtJI) in Escherichia coli
-
Higashi, K., Ishigure, H., Demizu, R., et al. (2008). Identification of a spermidine excretion protein complex (MdtJI) in Escherichia coli. Journal of Bacteriology, 190, 872-878.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 872-878
-
-
Higashi, K.1
Ishigure, H.2
Demizu, R.3
-
10
-
-
66349095388
-
Quantitative metabolome profiling of colon and stomach cancer microenvironment by capillary electrophoresis time-of-flight mass spectrometry
-
Hirayama, A., Kami, K., Sugimoto, M., et al. (2009). Quantitative metabolome profiling of colon and stomach cancer microenvironment by capillary electrophoresis time-of-flight mass spectrometry. Cancer Research, 69, 4918-4925.
-
(2009)
Cancer Research
, vol.69
, pp. 4918-4925
-
-
Hirayama, A.1
Kami, K.2
Sugimoto, M.3
-
11
-
-
0033572636
-
Polyamine transport in bacteria and yeast
-
Igarashi, K., & Kashiwagi, K. (1999). Polyamine transport in bacteria and yeast. The Biochemical Journal, 344, 633-642.
-
(1999)
The Biochemical Journal
, vol.344
, pp. 633-642
-
-
Igarashi, K.1
Kashiwagi, K.2
-
12
-
-
34247612307
-
Multiple high-throughput analyses monitor the response of E. coli to perturbations
-
Ishii, N., Nakahigashi, K., Baba, T., et al. (2007). Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science, 316, 593-597.
-
(2007)
Science
, vol.316
, pp. 593-597
-
-
Ishii, N.1
Nakahigashi, K.2
Baba, T.3
-
13
-
-
0035206757
-
Isolation and phylogenetic characterization of acidophilic microorganisms indigenous to acidic drainage waters at an abandoned Norwegian copper mine
-
Johnson, D. B., Rolfe, S., Hallberg, K. B., & Iversen, E. (2001). Isolation and phylogenetic characterization of acidophilic microorganisms indigenous to acidic drainage waters at an abandoned Norwegian copper mine. Environmental Microbiology, 3, 630-637.
-
(2001)
Environmental Microbiology
, vol.3
, pp. 630-637
-
-
Johnson, D.B.1
Rolfe, S.2
Hallberg, K.B.3
Iversen, E.4
-
14
-
-
27144544090
-
NspS, a predicted polyamine sensor, mediates activation of Vibrio cholerae biofilm formation by norspermidine
-
Karatan, E., Duncan, T. R., & Watnick, P. I. (2005). NspS, a predicted polyamine sensor, mediates activation of Vibrio cholerae biofilm formation by norspermidine. Journal of Bacteriology, 187, 7434-7443.
-
(2005)
Journal of Bacteriology
, vol.187
, pp. 7434-7443
-
-
Karatan, E.1
Duncan, T.R.2
Watnick, P.I.3
-
15
-
-
0026756705
-
Electrotransformation of Thiobacillus ferrooxidans with plasmids containing a mer determinant
-
Kusano, T., Sugawara, K., Inoue, C., Takeshima, T., Numata, M., & Shiratori, T. (1992). Electrotransformation of Thiobacillus ferrooxidans with plasmids containing a mer determinant. Journal of Bacteriology, 174, 6617-6623.
-
(1992)
Journal of Bacteriology
, vol.174
, pp. 6617-6623
-
-
Kusano, T.1
Sugawara, K.2
Inoue, C.3
Takeshima, T.4
Numata, M.5
Shiratori, T.6
-
16
-
-
58049183225
-
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations
-
Levicán, G., Ugalde, J. A., Ehrenfeld, N., Maass, A., & Parada, P. (2008). Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations. BMC Genomics, 9, 581.
-
(2008)
BMC Genomics
, vol.9
, pp. 581
-
-
Levicán, G.1
Ugalde, J.A.2
Ehrenfeld, N.3
Maass, A.4
Parada, P.5
-
17
-
-
0034071751
-
Construction and characterization of a recA mutant of Thiobacillus ferrooxidans by marker exchange mutagenesis
-
Liu, Z., Guiliani, N., Appia-Ayme, C., Borne, F., Ratouchniak, J., & Bonnefoy, V. (2000). Construction and characterization of a recA mutant of Thiobacillus ferrooxidans by marker exchange mutagenesis. Journal of Bacteriology, 182, 2269-2276.
-
(2000)
Journal of Bacteriology
, vol.182
, pp. 2269-2276
-
-
Liu, Z.1
Guiliani, N.2
Appia-Ayme, C.3
Borne, F.4
Ratouchniak, J.5
Bonnefoy, V.6
-
19
-
-
56649102388
-
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
-
Neuweger, H., Albaum, S. P., Dondrup, M., et al. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24, 2726-2732.
-
(2008)
Bioinformatics
, vol.24
, pp. 2726-2732
-
-
Neuweger, H.1
Albaum, S.P.2
Dondrup, M.3
-
20
-
-
38349189124
-
Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS
-
Ohashi, Y., Hirayama, A., Ishikawa, T., Nakamura, S., Shimizu, K., Ueno, Y., et al. (2008). Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS. Molecular BioSystems, 4, 135-147.
-
(2008)
Molecular BioSystems
, vol.4
, pp. 135-147
-
-
Ohashi, Y.1
Hirayama, A.2
Ishikawa, T.3
Nakamura, S.4
Shimizu, K.5
Ueno, Y.6
Tomita, M.7
Soga, T.8
-
21
-
-
84872664265
-
-
U. S. Patent No. 7, 700, 343
-
Ohata, A., Manabe, M., & Parada, P. (2010). Sulfur-oxidizing bacteria and their use in bioleaching processes for sulfured copper minerals. U. S. Patent No. 7, 700, 343.
-
(2010)
Sulfur-oxidizing bacteria and their use in bioleaching processes for sulfured copper minerals
-
-
Ohata, A.1
Manabe, M.2
Parada, P.3
-
22
-
-
24044530095
-
N1-aminopropylagmatine, a new polyamine produced as a key intermediate in polyamine biosynthesis of an extreme thermophile, Thermus thermophilus
-
Ohnuma, M., Terui, Y., Tamakoshi, M., et al. (2005). N1-aminopropylagmatine, a new polyamine produced as a key intermediate in polyamine biosynthesis of an extreme thermophile, Thermus thermophilus. The Journal of Biological Chemistry, 280, 30073-30082.
-
(2005)
The Journal of Biological Chemistry
, vol.280
, pp. 30073-30082
-
-
Ohnuma, M.1
Terui, Y.2
Tamakoshi, M.3
-
23
-
-
0242668356
-
Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation
-
Okibe, N., Gericke, M., Hallberg, K. B., & Johnson, D. B. (2003). Enumeration and characterization of acidophilic microorganisms isolated from a pilot plant stirred-tank bioleaching operation. Applied and Environmental Microbiology, 69, 1936-1943.
-
(2003)
Applied and Environmental Microbiology
, vol.69
, pp. 1936-1943
-
-
Okibe, N.1
Gericke, M.2
Hallberg, K.B.3
Johnson, D.B.4
-
24
-
-
70350445731
-
Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillusferrooxidans
-
Quatrini, R., Appia-Ayme, C., Denis, Y., Jedlicki, E., Holmes, D., & Bonnefoy, V. (2009). Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillusferrooxidans. BMC Genomics, 10, 394.
-
(2009)
BMC Genomics
, vol.10
, pp. 394
-
-
Quatrini, R.1
Appia-Ayme, C.2
Denis, Y.3
Jedlicki, E.4
Holmes, D.5
Bonnefoy, V.6
-
25
-
-
0037810930
-
The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp
-
Rohwerder, T., & Sand, W. (2003). The sulfane sulfur of persulfides is the actual substrate of the sulfur-oxidizing enzymes from Acidithiobacillus and Acidiphilium spp. Microbiology, 149, 1699-1709.
-
(2003)
Microbiology
, vol.149
, pp. 1699-1709
-
-
Rohwerder, T.1
Sand, W.2
-
26
-
-
0002948666
-
Analysis and function of the EPS from the strong acidophile Thiobacillus ferrooxidans
-
J. Wingender, T. R. Neu, and H.-C. Fleming (Eds.), Berlin: Springer
-
Sand, W., & Gehrke, T. (1999). Analysis and function of the EPS from the strong acidophile Thiobacillus ferrooxidans. In J. Wingender, T. R. Neu, & H.-C. Fleming (Eds.), Microbial extracellular polymeric substances: characterization, structure and function (pp. 127-141). Berlin: Springer.
-
(1999)
Microbial Extracellular Polymeric Substances: Characterization, Structure and Function
, pp. 127-141
-
-
Sand, W.1
Gehrke, T.2
-
27
-
-
58149242722
-
The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration
-
Santelli, C. M., Edgcomb, V. P., Bach, W., & Edwards, K. J. (2009). The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration. Environmental Microbiology, 11, 86-98.
-
(2009)
Environmental Microbiology
, vol.11
, pp. 86-98
-
-
Santelli, C.M.1
Edgcomb, V.P.2
Bach, W.3
Edwards, K.J.4
-
28
-
-
5144227035
-
Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection
-
Sato, S., Soga, T., Nishioka, T., & Tomita, M. (2004). Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. The Plant Journal: for Cell and Molecular Biology, 40, 151-163.
-
(2004)
The Plant Journal: For Cell and Molecular Biology
, vol.40
, pp. 151-163
-
-
Sato, S.1
Soga, T.2
Nishioka, T.3
Tomita, M.4
-
29
-
-
33746570641
-
Cellular location of polyamine transport protein PotD in Streptococcus pneumoniae
-
Shah, P., Marquat, M., Quin, L. R., & Swiatlo, E. (2006). Cellular location of polyamine transport protein PotD in Streptococcus pneumoniae. FEMS Microbiology Letters, 261, 235-237.
-
(2006)
FEMS Microbiology Letters
, vol.261
, pp. 235-237
-
-
Shah, P.1
Marquat, M.2
Quin, L.R.3
Swiatlo, E.4
-
30
-
-
32444446805
-
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., & Siuzdak, G. (2006). XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical Chemistry, 78, 779-787.
-
(2006)
Analytical Chemistry
, vol.78
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O'Maille, G.3
Abagyan, R.4
Siuzdak, G.5
-
31
-
-
0037093109
-
Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry
-
Soga, T., Ueno, Y., Naraoka, H., Ohashi, Y., Tomita, M., & Nishioka, T. (2002). Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry. Analytical Chemistry, 74, 2233-2239.
-
(2002)
Analytical Chemistry
, vol.74
, pp. 2233-2239
-
-
Soga, T.1
Ueno, Y.2
Naraoka, H.3
Ohashi, Y.4
Tomita, M.5
Nishioka, T.6
-
32
-
-
0242569355
-
Quantitative metabolome analysis using capillary electrophoresis mass spectrometry
-
Soga, T., Ohashi, Y., Ueno, Y., Naraoka, H., Tomita, M., & Nishioka, T. (2003). Quantitative metabolome analysis using capillary electrophoresis mass spectrometry. Journal of Proteome Research, 2, 488-494.
-
(2003)
Journal of Proteome Research
, vol.2
, pp. 488-494
-
-
Soga, T.1
Ohashi, Y.2
Ueno, Y.3
Naraoka, H.4
Tomita, M.5
Nishioka, T.6
-
33
-
-
33745209659
-
Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption
-
Soga, T., Baran, R., Suematsu, M., et al. (2006). Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption. The Journal of Biological Chemistry, 281, 16768-16776.
-
(2006)
The Journal of Biological Chemistry
, vol.281
, pp. 16768-16776
-
-
Soga, T.1
Baran, R.2
Suematsu, M.3
-
34
-
-
68049109441
-
Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry
-
Soga, T., Igarashi, K., Ito, C., Mizobuchi, K., Zimmermann, H. P., & Tomita, M. (2009). Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry. Analytical Chemistry, 81, 6165-6174.
-
(2009)
Analytical Chemistry
, vol.81
, pp. 6165-6174
-
-
Soga, T.1
Igarashi, K.2
Ito, C.3
Mizobuchi, K.4
Zimmermann, H.P.5
Tomita, M.6
-
35
-
-
0942279511
-
Evidence that putrescine acts as an extracellular signal required for swarming in Proteus mirabilis
-
Sturgill, G., & Rather, P. N. (2004). Evidence that putrescine acts as an extracellular signal required for swarming in Proteus mirabilis. Molecular Microbiology, 51, 437-446.
-
(2004)
Molecular Microbiology
, vol.51
, pp. 437-446
-
-
Sturgill, G.1
Rather, P.N.2
-
36
-
-
75249106445
-
Correlation between sensory evaluation scores of Japanese sake and metabolome profiles
-
Sugimoto, M., Koseki, T., Hirayama, A., et al. (2010a). Correlation between sensory evaluation scores of Japanese sake and metabolome profiles. Journal of Agriculture and Food Chemistry, 58, 374-383.
-
(2010)
Journal of Agriculture and Food Chemistry
, vol.58
, pp. 374-383
-
-
Sugimoto, M.1
Koseki, T.2
Hirayama, A.3
-
37
-
-
77949297718
-
Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles
-
Sugimoto, M., Wong, D. T., Hirayama, A., Soga, T., & Tomita, M. (2010b). Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles. Metabolomics, 6, 78-95.
-
(2010)
Metabolomics
, vol.6
, pp. 78-95
-
-
Sugimoto, M.1
Wong, D.T.2
Hirayama, A.3
Soga, T.4
Tomita, M.5
-
38
-
-
84872654221
-
-
U. S. Patent No. 7, 601, 530
-
Sugio, T., Miura, A., Parada, P., Badilla, R. (2009). Bacteria strain Wenelen DSM 16786, use of said bacteria for leaching of ores or concentrates containing metallic sulfide mineral species and leaching processes based on the use of said bacteria or mixtures that contain said bacteria. U. S. Patent No. 7, 601, 530.
-
(2009)
Bacteria strain Wenelen DSM 16786, use of said bacteria for leaching of ores or concentrates containing metallic sulfide mineral species and leaching processes based on the use of said bacteria or mixtures that contain said bacteria
-
-
Sugio, T.1
Miura, A.2
Parada, P.3
Badilla, R.4
-
40
-
-
20544443981
-
Stabilization of nucleic acids by unusual polyamines produced by an extreme thermophile, Thermus thermophilus
-
Terui, Y., Ohnuma, M., Hiraga, K., Kawashima, E., & Oshima, T. (2005). Stabilization of nucleic acids by unusual polyamines produced by an extreme thermophile, Thermus thermophilus. The Biochemical Journal, 388, 427-433.
-
(2005)
The Biochemical Journal
, vol.388
, pp. 427-433
-
-
Terui, Y.1
Ohnuma, M.2
Hiraga, K.3
Kawashima, E.4
Oshima, T.5
-
41
-
-
26844447711
-
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community
-
Tyson, G. W., Lo, I., Baker, B. J., Allen, E. E., Hugenholtz, P., & Banfield, J. F. (2005). Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Applied and Environmental Microbiology, 71, 6319-6324.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 6319-6324
-
-
Tyson, G.W.1
Lo, I.2
Baker, B.J.3
Allen, E.E.4
Hugenholtz, P.5
Banfield, J.F.6
-
42
-
-
58249113952
-
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
-
Valdés, J., Pedroso, I., Quatrini, R., et al. (2008). Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. BMC Genomics, 9, 597.
-
(2008)
BMC Genomics
, vol.9
, pp. 597
-
-
Valdés, J.1
Pedroso, I.2
Quatrini, R.3
|