메뉴 건너뛰기




Volumn 9, Issue 1, 2013, Pages 21-32

High performance analysis of the cyanobacterial metabolism via liquid chromatography coupled to a LTQ-Orbitrap mass spectrometer: Evidence that glucose reprograms the whole carbon metabolism and triggers oxidative stress

Author keywords

Central carbon metabolism; Cyanobacterium; LC MS LTQ Orbitrap; Matrix effect; Metabolic reprogramming; Synechocystis

Indexed keywords

BACTERIAL POLYSACCHARIDE; CARBON; CARBON DIOXIDE; CHEMICAL COMPOUND; GLUCOSE; ION; PENTAFLUOROPHENYLPROPYL; PENTOSE PHOSPHATE; REACTIVE OXYGEN METABOLITE; UNCLASSIFIED DRUG;

EID: 84872651738     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-011-0382-4     Document Type: Article
Times cited : (30)

References (47)
  • 3
    • 71849086611 scopus 로고    scopus 로고
    • Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde
    • Atsumi, S., Higashide, W., & Liao, J. C. (2009). Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde. Nature Biotechnology, 27(12), 1177-1180.
    • (2009) Nature Biotechnology , vol.27 , Issue.12 , pp. 1177-1180
    • Atsumi, S.1    Higashide, W.2    Liao, J.C.3
  • 4
    • 0030619210 scopus 로고    scopus 로고
    • Trichodesmium, a globally significant marine cyanobacterium
    • Capone, D. G., Zehr, J. P., Paerl, H. W., Bergman, B., & Carpenter, E. J. (1997). Trichodesmium, a globally significant marine cyanobacterium. Science, 276, 1221-1229.
    • (1997) Science , vol.276 , pp. 1221-1229
    • Capone, D.G.1    Zehr, J.P.2    Paerl, H.W.3    Bergman, B.4    Carpenter, E.J.5
  • 5
    • 40849119798 scopus 로고    scopus 로고
    • Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor
    • Deusch, O., Landan, G., Roettger, M., Gruenheit, N., Kowallik, K. V., Allen, J. F., et al. (2008). Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Molecular Biology and Evolution, 25(4), 748-761.
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.4 , pp. 748-761
    • Deusch, O.1    Landan, G.2    Roettger, M.3    Gruenheit, N.4    Kowallik, K.V.5    Allen, J.F.6
  • 8
    • 3142559798 scopus 로고    scopus 로고
    • Function and regulation of the cyanobacterial genes lexA, recA and ruvB: LexA is critical to the survival of cells facing inorganic carbon starvation
    • Domain, F., Houot, L., Chauvat, F., & Cassier-Chauvat, C. (2004). Function and regulation of the cyanobacterial genes lexA, recA and ruvB: LexA is critical to the survival of cells facing inorganic carbon starvation. Molecular Microbiology, 53(1), 65-80.
    • (2004) Molecular Microbiology , vol.53 , Issue.1 , pp. 65-80
    • Domain, F.1    Houot, L.2    Chauvat, F.3    Cassier-Chauvat, C.4
  • 9
    • 0009663357 scopus 로고
    • A multiple comparisons procedure for comparing several treatments with a control
    • Dunnett, C. W. (1955). A multiple comparisons procedure for comparing several treatments with a control. Journal of American Statistical Association, 50, 1096-1121.
    • (1955) Journal of American Statistical Association , vol.50 , pp. 1096-1121
    • Dunnett, C.W.1
  • 10
    • 57749091442 scopus 로고    scopus 로고
    • Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803
    • Eisenhut, M., Huege, J., Schwarz, D., Bauwe, H., Kopka, J., & Hagemann, M. (2008). Metabolome phenotyping of inorganic carbon limitation in cells of the wild type and photorespiratory mutants of the cyanobacterium Synechocystis sp. strain PCC 6803. Plant Physiology, 148(4), 2109-2120.
    • (2008) Plant Physiology , vol.148 , Issue.4 , pp. 2109-2120
    • Eisenhut, M.1    Huege, J.2    Schwarz, D.3    Bauwe, H.4    Kopka, J.5    Hagemann, M.6
  • 11
    • 0032503986 scopus 로고    scopus 로고
    • Primary production of the biosphere: integrating terrestrial and oceanic components
    • Field, C. B., Behrenfeld, M. J., Randerson, J. T., & Falkowski, P. (1998). Primary production of the biosphere: integrating terrestrial and oceanic components. Science, 281(5374), 237-240.
    • (1998) Science , vol.281 , Issue.5374 , pp. 237-240
    • Field, C.B.1    Behrenfeld, M.J.2    Randerson, J.T.3    Falkowski, P.4
  • 12
    • 0035577942 scopus 로고    scopus 로고
    • Reduction of signal suppression effects in ESI-MS using a nanosplitting device
    • Gangl, E. T., Annan, M. M., Spooner, N., & Vouros, P. (2001). Reduction of signal suppression effects in ESI-MS using a nanosplitting device. Analytical Chemistry, 73(23), 5635-5644.
    • (2001) Analytical Chemistry , vol.73 , Issue.23 , pp. 5635-5644
    • Gangl, E.T.1    Annan, M.M.2    Spooner, N.3    Vouros, P.4
  • 14
    • 0020049959 scopus 로고
    • Transformation in the cyanobacterium Synechocystis sp 6803
    • Grigorieva, G., & Shestakov, S. (1982). Transformation in the cyanobacterium Synechocystis sp 6803. FEMS Microbiology Letters, 13, 367-370.
    • (1982) FEMS Microbiology Letters , vol.13 , pp. 367-370
    • Grigorieva, G.1    Shestakov, S.2
  • 15
    • 79959821814 scopus 로고    scopus 로고
    • Cross-talk between photomixotrophic growth and CO(2) -concentrating mechanism in Synechocystis sp. strain PCC 6803
    • Haimovich-Dayan, M., Kahlon, S., Hihara, Y., Hagemann, M., Ogawa, T., Ohad, I., et al. (2011). Cross-talk between photomixotrophic growth and CO(2) -concentrating mechanism in Synechocystis sp. strain PCC 6803. Environmental Microbiology, 13(7), 1767-1777.
    • (2011) Environmental Microbiology , vol.13 , Issue.7 , pp. 1767-1777
    • Haimovich-Dayan, M.1    Kahlon, S.2    Hihara, Y.3    Hagemann, M.4    Ogawa, T.5    Ohad, I.6
  • 16
    • 0036012891 scopus 로고    scopus 로고
    • Simultaneous determination of a drug candidate and its metabolite in rat plasma samples using ultrafast monolithic column high-performance liquid chromatography/tandem mass spectrometry
    • Hsieh, Y., Wang, G., Wang, Y., Chackalamannil, S., Brisson, J. M., Ng, K., et al. (2002). Simultaneous determination of a drug candidate and its metabolite in rat plasma samples using ultrafast monolithic column high-performance liquid chromatography/tandem mass spectrometry. Rapid Communications in Mass Spectrometry, 16(10), 944-950.
    • (2002) Rapid Communications in Mass Spectrometry , vol.16 , Issue.10 , pp. 944-950
    • Hsieh, Y.1    Wang, G.2    Wang, Y.3    Chackalamannil, S.4    Brisson, J.M.5    Ng, K.6
  • 17
    • 77955790535 scopus 로고    scopus 로고
    • Fourier transform mass spectrometry for metabolome analysis
    • Junot, C., Madalinski, G., Tabet, J. C., & Ezan, E. (2010). Fourier transform mass spectrometry for metabolome analysis. Analyst, 135(9), 2203-2219.
    • (2010) Analyst , vol.135 , Issue.9 , pp. 2203-2219
    • Junot, C.1    Madalinski, G.2    Tabet, J.C.3    Ezan, E.4
  • 18
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M., & Goto, S. (2000). KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Research, 28(1), 27-30.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 19
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., et al. (1996). Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Research, 3, 109-136.
    • (1996) DNA Research , vol.3 , pp. 109-136
    • Kaneko, T.1    Sato, S.2    Kotani, H.3    Tanaka, A.4    Asamizu, E.5    Nakamura, Y.6
  • 20
    • 0042697730 scopus 로고    scopus 로고
    • From genome to enzyme: analysis of key glycolytic and oxidative pentose-phosphate pathway enzymes in the cyanobacterium Synechocystis sp. PCC 6803
    • Knowles, V. L., & Plaxton, W. C. (2003). From genome to enzyme: analysis of key glycolytic and oxidative pentose-phosphate pathway enzymes in the cyanobacterium Synechocystis sp. PCC 6803. Plant and Cell Physiology, 44(7), 758-763.
    • (2003) Plant and Cell Physiology , vol.44 , Issue.7 , pp. 758-763
    • Knowles, V.L.1    Plaxton, W.C.2
  • 23
    • 77953362009 scopus 로고    scopus 로고
    • Coupling liquid chromatography to Orbitrap mass spectrometry
    • Makarov, A., & Scigelova, M. (2010). Coupling liquid chromatography to Orbitrap mass spectrometry. Journal of Chromatography A, 1217(25), 3938-3945.
    • (2010) Journal of Chromatography A , vol.1217 , Issue.25 , pp. 3938-3945
    • Makarov, A.1    Scigelova, M.2
  • 24
    • 0027688535 scopus 로고
    • A conjugative plasmid vector for promoter analysis in several cyanobacteria of the genera Synechococcus and Synechocystis
    • Marraccini, P., Bulteau, S., Cassier-Chauvat, C., Mermet-Bouvier, P., & Chauvat, F. (1993). A conjugative plasmid vector for promoter analysis in several cyanobacteria of the genera Synechococcus and Synechocystis. Plant Molecular Biology, 23, 905-909.
    • (1993) Plant Molecular Biology , vol.23 , pp. 905-909
    • Marraccini, P.1    Bulteau, S.2    Cassier-Chauvat, C.3    Mermet-Bouvier, P.4    Chauvat, F.5
  • 25
    • 0037663202 scopus 로고    scopus 로고
    • Strategies for the assessment of matrix effect in quantitative bioanalytical methods based on HPLC-MS/MS
    • Matuszewski, B. K., Constanzer, M. L., & Chavez-Eng, C. M. (2003). Strategies for the assessment of matrix effect in quantitative bioanalytical methods based on HPLC-MS/MS. Analytical Chemistry, 75(13), 3019-3030.
    • (2003) Analytical Chemistry , vol.75 , Issue.13 , pp. 3019-3030
    • Matuszewski, B.K.1    Constanzer, M.L.2    Chavez-Eng, C.M.3
  • 26
    • 3142722865 scopus 로고    scopus 로고
    • Molecular analysis of the key cytokinetic components of cyanobacteria: FtsZ, ZipN and MinCDE
    • Mazouni, K., Domain, F., Cassier-Chauvat, C., & Chauvat, F. (2004). Molecular analysis of the key cytokinetic components of cyanobacteria: FtsZ, ZipN and MinCDE. Molecular Microbiology, 52(4), 1145-1158.
    • (2004) Molecular Microbiology , vol.52 , Issue.4 , pp. 1145-1158
    • Mazouni, K.1    Domain, F.2    Cassier-Chauvat, C.3    Chauvat, F.4
  • 27
    • 0037214121 scopus 로고    scopus 로고
    • Investigation of matrix effects in bioanalytical high-performance liquid chromatography/tandem mass spectrometric assays: application to drug discovery
    • Mei, H., Hsieh, Y., Nardo, C., Xu, X., Wang, S., Ng, K., et al. (2003). Investigation of matrix effects in bioanalytical high-performance liquid chromatography/tandem mass spectrometric assays: application to drug discovery. Rapid Communications in Mass Spectrometry, 17(1), 97-103.
    • (2003) Rapid Communications in Mass Spectrometry , vol.17 , Issue.1 , pp. 97-103
    • Mei, H.1    Hsieh, Y.2    Nardo, C.3    Xu, X.4    Wang, S.5    Ng, K.6
  • 28
    • 0028348970 scopus 로고
    • A conditional expression vector for the cyanobacteria Synechocystis sp. PCC6803 and PCC6714 or Synechococcus sp. PCC7942 and PCC6301
    • Mermet-Bouvier, P., & Chauvat, F. (1994). A conditional expression vector for the cyanobacteria Synechocystis sp. PCC6803 and PCC6714 or Synechococcus sp. PCC7942 and PCC6301. Current Microbiology, 28, 145-148.
    • (1994) Current Microbiology , vol.28 , pp. 145-148
    • Mermet-Bouvier, P.1    Chauvat, F.2
  • 29
  • 30
    • 0015441506 scopus 로고
    • Metabolism of glucose by unicellular blue-green algae
    • Pelroy, R. A., Rippka, R., & Stanier, R. Y. (1972). Metabolism of glucose by unicellular blue-green algae. Arch Mikrobiol, 87(4), 303-322.
    • (1972) Arch Mikrobiol , vol.87 , Issue.4 , pp. 303-322
    • Pelroy, R.A.1    Rippka, R.2    Stanier, R.Y.3
  • 31
    • 68149102969 scopus 로고    scopus 로고
    • Complexity of cyanobacterial exopolysaccharides: Composition, structures, inducing factors and putative genes involved in their biosynthesis and assembly
    • Pereira, S., Zille, A., Micheletti, E., Moradas-Ferreira, P., De Philippis, R., & Tamagnini, P. (2009). Complexity of cyanobacterial exopolysaccharides: Composition, structures, inducing factors and putative genes involved in their biosynthesis and assembly. FEMS Microbiology Reviews, 33(5), 917-941.
    • (2009) FEMS Microbiology Reviews , vol.33 , Issue.5 , pp. 917-941
    • Pereira, S.1    Zille, A.2    Micheletti, E.3    Moradas-Ferreira, P.4    de Philippis, R.5    Tamagnini, P.6
  • 32
    • 0031803632 scopus 로고    scopus 로고
    • Targeted deletion and mutational analysis of the essential (2Fe-2S) plant-like ferredoxin in Synechocystis PCC6803 by plasmid shuffling
    • Poncelet, M., Cassier-Chauvat, C., Leschelle, X., Bottin, H., & Chauvat, F. (1998). Targeted deletion and mutational analysis of the essential (2Fe-2S) plant-like ferredoxin in Synechocystis PCC6803 by plasmid shuffling. Molecular Microbiology, 28, 813-821.
    • (1998) Molecular Microbiology , vol.28 , pp. 813-821
    • Poncelet, M.1    Cassier-Chauvat, C.2    Leschelle, X.3    Bottin, H.4    Chauvat, F.5
  • 35
    • 40649083066 scopus 로고    scopus 로고
    • Genome evolution in cyanobacteria: The stable core and the variable shell
    • Shi, T., & Falkowski, P. G. (2008). Genome evolution in cyanobacteria: The stable core and the variable shell. Proceedings of the National Academy of Sciences USA, 105(7), 2510-2515.
    • (2008) Proceedings of the National Academy of Sciences USA , vol.105 , Issue.7 , pp. 2510-2515
    • Shi, T.1    Falkowski, P.G.2
  • 36
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith, C. A., Want, E. J., O'Maille, G., Abagyan, R., & Siuzdak, G. (2006). XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical Chemistry, 78(3), 779-787.
    • (2006) Analytical Chemistry , vol.78 , Issue.3 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 37
    • 50949124061 scopus 로고    scopus 로고
    • Global transcriptional response of the alkali-tolerant cyanobacterium Synechocystis sp. strain PCC 6803 to a pH 10 environment
    • Summerfield, T. C., & Sherman, L. A. (2008). Global transcriptional response of the alkali-tolerant cyanobacterium Synechocystis sp. strain PCC 6803 to a pH 10 environment. Applied and Environmental Microbiology, 74(17), 5276-5284.
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.17 , pp. 5276-5284
    • Summerfield, T.C.1    Sherman, L.A.2
  • 39
    • 49449098777 scopus 로고    scopus 로고
    • Difference in metabolite levels between photoautotrophic and photomixotrophic cultures of Synechocystis sp. PCC 6803 examined by capillary electrophoresis electrospray ionization mass spectrometry
    • Takahashi, H., Uchimiya, H., & Hihara, Y. (2008). Difference in metabolite levels between photoautotrophic and photomixotrophic cultures of Synechocystis sp. PCC 6803 examined by capillary electrophoresis electrospray ionization mass spectrometry. Journal of Experimental Botany, 59(11), 3009-3018.
    • (2008) Journal of Experimental Botany , vol.59 , Issue.11 , pp. 3009-3018
    • Takahashi, H.1    Uchimiya, H.2    Hihara, Y.3
  • 40
    • 0036006585 scopus 로고    scopus 로고
    • Implications of matrix effects in ultra-fast gradient or fast isocratic liquid chromatography with mass spectrometry in drug discovery
    • Tiller, P. R., & Romanyshyn, L. A. (2002). Implications of matrix effects in ultra-fast gradient or fast isocratic liquid chromatography with mass spectrometry in drug discovery. Rapid Communications in Mass Spectrometry, 16(2), 92-98.
    • (2002) Rapid Communications in Mass Spectrometry , vol.16 , Issue.2 , pp. 92-98
    • Tiller, P.R.1    Romanyshyn, L.A.2
  • 41
    • 57749202256 scopus 로고    scopus 로고
    • Panning for chemical gold: marine bacteria as a source of new therapeutics
    • Williams, P. G. (2009). Panning for chemical gold: marine bacteria as a source of new therapeutics. Trends in Biotechnology, 27(1), 45-52.
    • (2009) Trends in Biotechnology , vol.27 , Issue.1 , pp. 45-52
    • Williams, P.G.1
  • 42
    • 0036253128 scopus 로고    scopus 로고
    • Integration of the information from gene expression and metabolic fluxes for the analysis of the regulatory mechanisms in Synechocystis
    • Yang, C., Hua, Q., & Shimizu, K. (2002). Integration of the information from gene expression and metabolic fluxes for the analysis of the regulatory mechanisms in Synechocystis. Applied Microbiology and Biotechnology, 58(6), 813-822.
    • (2002) Applied Microbiology and Biotechnology , vol.58 , Issue.6 , pp. 813-822
    • Yang, C.1    Hua, Q.2    Shimizu, K.3
  • 43
    • 78049265337 scopus 로고    scopus 로고
    • Streamlined pentafluorophenylpropyl column liquid chromatography-tandem quadrupole mass spectrometry and global (13)C-labeled internal standards improve performance for quantitative metabolomics in bacteria
    • Yang, S., Sadilek, M., & Lidstrom, M. E. (2010). Streamlined pentafluorophenylpropyl column liquid chromatography-tandem quadrupole mass spectrometry and global (13)C-labeled internal standards improve performance for quantitative metabolomics in bacteria. Journal of Chromatography A, 1217(47), 7401-7410.
    • (2010) Journal of Chromatography A , vol.1217 , Issue.47 , pp. 7401-7410
    • Yang, S.1    Sadilek, M.2    Lidstrom, M.E.3
  • 44
    • 34247891778 scopus 로고    scopus 로고
    • Comprehensive analytical method for the determination of hydrophilic metabolites by high-performance liquid chromatography and mass spectrometry
    • Yoshida, H., Mizukoshi, T., Hirayama, K., & Miyano, H. (2007). Comprehensive analytical method for the determination of hydrophilic metabolites by high-performance liquid chromatography and mass spectrometry. Journal of Agricultural and Food Chemistry, 55(3), 551-560.
    • (2007) Journal of Agricultural and Food Chemistry , vol.55 , Issue.3 , pp. 551-560
    • Yoshida, H.1    Mizukoshi, T.2    Hirayama, K.3    Miyano, H.4
  • 45
    • 64549155690 scopus 로고    scopus 로고
    • Advantage of LC-MS metabolomics methodology targeting hydrophilic compounds in the studies of fermented food samples
    • Yoshida, H., Yamazaki, J., Ozawa, S., Mizukoshi, T., & Miyano, H. (2009). Advantage of LC-MS metabolomics methodology targeting hydrophilic compounds in the studies of fermented food samples. Journal of Agricultural and Food Chemistry, 57(4), 1119-1126.
    • (2009) Journal of Agricultural and Food Chemistry , vol.57 , Issue.4 , pp. 1119-1126
    • Yoshida, H.1    Yamazaki, J.2    Ozawa, S.3    Mizukoshi, T.4    Miyano, H.5
  • 47
    • 30744452739 scopus 로고    scopus 로고
    • Heterocyst differentiation and pattern formation in cyanobacteria: A chorus of signals
    • Zhang, C. C., Laurent, S., Sakr, S., Peng, L., & Bedu, S. (2006). Heterocyst differentiation and pattern formation in cyanobacteria: A chorus of signals. Molecular Microbiology, 59(2), 367-375.
    • (2006) Molecular Microbiology , vol.59 , Issue.2 , pp. 367-375
    • Zhang, C.C.1    Laurent, S.2    Sakr, S.3    Peng, L.4    Bedu, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.