High-resolution MRI of early-stage mouse embryos

NMR in Biomedicine

Volumn 26, Issue 2, 2013, Pages 224-231

  Parasoglou, Prodromos ^a   Berrios Otero, Cesar A ^a   Nieman, Brian J ^b,c   Turnbull, Daniel H ^a  

^a NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b HOSPITAL FOR SICK CHILDREN   (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

Brain ventricles; Central nervous system (CNS); Cerebral vasculature; In utero imaging; Mouse embryo

Indexed keywords

BRAIN VENTRICLES; CENTRAL NERVOUS SYSTEMS; CONTRAST AGENT; EX-VIVO; FUTURE APPLICATIONS; GENETICALLY MODIFIED; HIGH CONTRAST; HIGH RESOLUTION; LONGITUDINAL IMAGING; MOUSE EMBRYOS; MOUSE GENOME; MUTANT MOUSE PHENOTYPES; OPTICAL METHODS; PHENOTYPING; PHYSIOLOGICAL SYSTEMS; THREE DIMENSIONAL IMAGES; VASCULATURE;

BRAIN; IMAGE REGISTRATION;

MAMMALS;

ANIMAL EXPERIMENT; ARTICLE; BRAIN BLOOD VESSEL; CENTRAL NERVOUS SYSTEM; DEVELOPMENTAL STAGE; FEMALE; IMAGE DISPLAY; IMAGE QUALITY; LIMB; MOUSE; MOUSE EMBRYO; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; ORGANOGENESIS; PRIORITY JOURNAL; SPINE;

ANIMALS; EMBRYO, MAMMALIAN; IMAGE ENHANCEMENT; MAGNETIC RESONANCE IMAGING; MICE; MICE, INBRED ICR; PRENATAL DIAGNOSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

ANIMALIA; MAMMALIA;

EID: 84872617199     PISSN: 09523480     EISSN: 10991492     Source Type: Journal    
DOI: 10.1002/nbm.2843     Document Type: Article

References (32)

1. Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Larty EO, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Strange-Thomann NS, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Vidal AU, Vinson JP, von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES. Mouse Genome Sequencing C. Initial sequencing and comparative analysis of the mouse genome. Nature, 2002; 420(6915): 520-562.
2. Collins FS. Int Mouse Knockout C. A mouse for all reasons. Cell 2007; 128(1): 9-13.
3. Nieman BJ, Wong MD, Henkelman RM. Genes into geometry: imaging for mouse development in 3D. Curr. Opin. Genetics Dev. 2011; 21(5): 638-646.
4. Henkelman RM. Systems biology through mouse imaging centers: experience and new directions. Annu. Rev. Biomed. Eng. 2010; 12: 143-166.
5. Kaufman MH. The Atlas of Mouse Development. Academic Press: London; 1994.
6. Smith BR, Johnson GA, Groman EV, Linney E. Magnetic-resonance microscopy of mouse embryos. Proc. Natl. Acad. Sci. USA 1994; 91(9): 3530-3533.
7. Wadghiri YZ, Schneider AE, Gray EN, Aristizabal O, Berrios C, Turnbull DH, Gutstein DE. Contrast-enhanced MRI of right ventricular abnormalities in Cx43 mutant mouse embryos. NMR Biomed. 2007; 20(3): 366-374.
8. Berrios-Otero CA, Wadghiri YZ, Nieman BJ, Joyner AL, Turnbull DH. Three-dimensional micro-MRI analysis of cerebral artery development in mouse embryos. Magn. Reson. Med. 2009; 62(6): 1431-1439.
9. Jacobs RE, Ahrens ET, Dickinson ME, Laidlaw D. Towards a microMRI atlas of mouse development. Comput. Med. Imaging Graph. 1999; 23(1): 15-24.
10. Dhenain M, Ruffins SW, Jacobs RE. Three-dimensional digital mouse atlas using high-resolution MRI. Dev. Biol. 2001; 232(2): 458-470.
11. Cleary JO, Modat M, Norris FC, Price AN, Jayakody SA, Martinez-Barbera JP, Greene NDE, Hawkes DJ, Ordidge RJ, Scambler PJ, Ourselin S, Lythgoe MF. Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping. NeuroImage 2011; 54(2): 769-778.
12. Mori S, Itoh R, Zhang J, Kaufmann WE, van Zijl PCM, Solaiyappan M, Yarowsky P. Diffusion tensor imaging of the developing mouse brain. Magn. Reson. Med. 2001; 46(1): 18-23.
13. Phoon CKL, Turnbull DH. Ultrasound biomicroscopy-Doppler in mouse cardiovascular development. Physiol. Genomics 2003; 14(1): 3-15.
14. Aristizabal O, Ketterling JA, Turnbull DH. 40-MHz annular array imaging of mouse embryos. Ultrasound Med. Biol. 2006; 32(11): 1631-1637.
15. Hogers B, Gross D, Lehmann V, Zick K, De Groot HJM, Gittenberger-De Groot AC, Poelmann RE. Magnetic resonance microscopy of mouse embryos in utero. Anat. Rec. 2000; 260(4): 373-377.
16. Chapon C, Franconi F, Roux J, Marescaux L, Le Jeune JJ, Lemaire L. In utero time-course assessment of mouse embryo development using high resolution magnetic resonance imaging. Anat. Embryol. 2002; 206(1-2): 131-137.
17. Chapon C, Franconi F, Roux J, Le Jeune JJ, Lemaire L. Prenatal evaluation of kidney function in mice using dynamic contrast-enhanced magnetic resonance imaging. Anat. Embryol. 2005; 209(4): 263-267.
18. Plaks V, Kalchenko V, Dekel N, Neeman M. MRI analysis of angiogenesis during mouse embryo implantation. Magn. Reson. Med. 2006; 55(5): 1013-1022.
19. Cohen B, Ziv K, Plaks V, Israely T, Kalchenko V, Harmelin A, Benjamin LE, Neeman M. MRI detection of transcriptional regulation of gene expression in transgenic mice. Nat. Med. 2007; 13(4): 498-503.
20. Deans AE, Wadghiri YZ, Berrios-Otero CA, Turnbull DH. Mn enhancement and respiratory gating for in utero MRI of the embryonic mouse central nervous system. Magn. Reson. Med. 2008; 59(6): 1320-1328.
21. Larson AC, White RD, Laub G, McVeigh ER, Li DB, Simonetti OP. Self-gated cardiac cine MRI. Magn. Reson. Med. 2004; 51(1): 93-102.
22. Brau ACS, Brittain JH. Generalized self-navigated motion detection technique: preliminary investigation in abdominal imaging. Magn. Reson. Med. 2006; 55(2): 263-270.
23. Hiba B, Richard N, Janier M, Croisille P. Cardiac and respiratory double self-gated cine MRI in the mouse at 7 T. Magn. Reson. Med. 2006; 55(3): 506-513.
24. Nieman BJ, Szulc KU, Turnbull DH. Three-dimensional, in vivo MRI with self-gating and image coregistration in the mouse. Magn. Reson. Med. 2009; 61(5): 1148-1157.
25. Berrios-Otero CA, Nieman BJ, Parasoglou P, Turnbull DH. In utero phenotyping of mouse embryonic vasculature with MRI. Magn. Reson. Med. 2012; 67(1): 251-257.
26. Collins DL, Neelin P, Peters TM, Evans AC. Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space. J. Comput. Assist. Tomogr. 1994; 18(2): 192-205.
27. Shepp LA, Logan BF. Fourier reconstruction of a head section. IEEE Trans. Nucl. Sci. 1974; NS21(3): 21-43.
28. Segars WP, Tsui BMW, Frey EC, Johnson GA, Berr SS. Development of a 4-D digital mouse phantom for molecular imaging research. Mol. Imaging Biol. 2004; 6(3): 149-159.
29. Parr BA, Shea MJ, Vassileva G, McMahon AP. Mouse WNT genes exhibit discrete domains of expression in the early embryonic CNS and limb buds. Development 1993; 119(1): 247-261.
30. Wurst W, Auerbach AB, Joyner AL. Multiple developmental defects in engrailed-1 mutant mice - an early mid-hindbrain deletion and patterning defects in forelimbs and sternum. Development 1994; 120(7): 2065-2075.
31. Haacke EM, Brown R, Thompson M, Venkatesan R. Magnetic Resonance Imaging: Physical Properties and Sequence Design. Wiley: New York; 1999.
32. Avni R, Raz T, Biton IE, Kalchenko V, Garbow JR, Neeman M. Unique in utero identification of fetuses in multifetal mouse pregnancies by placental bidirectional arterial spin labeling MRI. Magn. Reson. Med. 2012; 68(2): 560-570.