메뉴 건너뛰기




Volumn 54, Issue 2, 2011, Pages 769-778

Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping

Author keywords

Embryo atlas; Image registration; Magnetic resonance microscopy; Mouse embryo phenotyping

Indexed keywords

TRANSCRIPTION FACTOR HESX1;

EID: 78649664454     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2010.07.039     Document Type: Article
Times cited : (51)

References (48)
  • 1
    • 0033933649 scopus 로고    scopus 로고
    • Voxel-based morphometry-the methods
    • Ashburner J., Friston K.J. Voxel-based morphometry-the methods. Neuroimage 2000, 11:805-821.
    • (2000) Neuroimage , vol.11 , pp. 805-821
    • Ashburner, J.1    Friston, K.J.2
  • 2
    • 33646835211 scopus 로고    scopus 로고
    • In vivo magnetic resonance imaging and semiautomated image analysis extend the brain phenotype for cdf/cdf mice
    • Bock N.A., Kovacevic N., Lipina T.V., Roder J.C., Ackerman S.L., Henkelman R.M. In vivo magnetic resonance imaging and semiautomated image analysis extend the brain phenotype for cdf/cdf mice. J. Neurosci. 2006, 26:4455-4459.
    • (2006) J. Neurosci. , vol.26 , pp. 4455-4459
    • Bock, N.A.1    Kovacevic, N.2    Lipina, T.V.3    Roder, J.C.4    Ackerman, S.L.5    Henkelman, R.M.6
  • 4
    • 0034011671 scopus 로고    scopus 로고
    • Automatic measurement of changes in brain volume on consecutive 3D MR images by segmentation propagation
    • Calmon G., Roberts N. Automatic measurement of changes in brain volume on consecutive 3D MR images by segmentation propagation. Magn. Reson. Imaging 2000, 18:439-453.
    • (2000) Magn. Reson. Imaging , vol.18 , pp. 439-453
    • Calmon, G.1    Roberts, N.2
  • 8
    • 77953648269 scopus 로고    scopus 로고
    • Rapid 3D phenotyping of cardiovascular development in mouse embryos by micro-CT with iodine staining
    • Degenhardt K., Wright A.C., Horng D., Padmanabhan A., Epstein J.A. Rapid 3D phenotyping of cardiovascular development in mouse embryos by micro-CT with iodine staining. Circ. Cardiovasc. Imaging 2010, 3:314-322.
    • (2010) Circ. Cardiovasc. Imaging , vol.3 , pp. 314-322
    • Degenhardt, K.1    Wright, A.C.2    Horng, D.3    Padmanabhan, A.4    Epstein, J.A.5
  • 9
    • 0035871424 scopus 로고    scopus 로고
    • Three-dimensional digital mouse atlas using high-resolution MRI
    • Dhenain M., Ruffins S., Jacobs R. Three-dimensional digital mouse atlas using high-resolution MRI. Dev. Biol. 2001.
    • (2001) Dev. Biol.
    • Dhenain, M.1    Ruffins, S.2    Jacobs, R.3
  • 10
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • Dice L. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.1
  • 11
    • 45849093291 scopus 로고    scopus 로고
    • High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice
    • Dorr A.E., Lerch J.P., Spring S., Kabani N., Henkelman R.M. High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice. Neuroimage 2008, 42:60-69.
    • (2008) Neuroimage , vol.42 , pp. 60-69
    • Dorr, A.E.1    Lerch, J.P.2    Spring, S.3    Kabani, N.4    Henkelman, R.M.5
  • 12
    • 34147096361 scopus 로고    scopus 로고
    • Combined loss of Hey1 and HeyL causes congenital heart defects because of impaired epithelial to mesenchymal transition
    • Fischer A., Steidl C., Wagner T.U., Lang E., Jakob P.M., Friedl P., Knobeloch K.-P., Gessler M. Combined loss of Hey1 and HeyL causes congenital heart defects because of impaired epithelial to mesenchymal transition. Circ. Res. 2007, 100:856-863.
    • (2007) Circ. Res. , vol.100 , pp. 856-863
    • Fischer, A.1    Steidl, C.2    Wagner, T.U.3    Lang, E.4    Jakob, P.M.5    Friedl, P.6    Knobeloch, K.-P.7    Gessler, M.8
  • 13
    • 0036680539 scopus 로고    scopus 로고
    • Micro-CT in small animal and specimen imaging
    • Holdsworth D., Thornton M. Micro-CT in small animal and specimen imaging. Trends Biotechnol. 2002, 20:S34-S39.
    • (2002) Trends Biotechnol. , vol.20
    • Holdsworth, D.1    Thornton, M.2
  • 14
    • 33846002394 scopus 로고    scopus 로고
    • A mouse for all reasons
    • International Mouse Knockout Consortium
    • Collins F.S., Rossant J., Wurst W. A mouse for all reasons. Cell 2007, 128:9-13. International Mouse Knockout Consortium.
    • (2007) Cell , vol.128 , pp. 9-13
    • Collins, F.S.1    Rossant, J.2    Wurst, W.3
  • 22
    • 0030960602 scopus 로고    scopus 로고
    • T2 relaxation time as a marker of brain myelination: experimental MR study in two neonatal animal models
    • Miot-Noirault E., Barantin L., Akoka S., Le Pape A. T2 relaxation time as a marker of brain myelination: experimental MR study in two neonatal animal models. J. Neurosci. Meth. 1997, 72:5-14.
    • (1997) J. Neurosci. Meth. , vol.72 , pp. 5-14
    • Miot-Noirault, E.1    Barantin, L.2    Akoka, S.3    Le Pape, A.4
  • 26
    • 57749117790 scopus 로고    scopus 로고
    • Micro-CT evaluation of murine fetal skeletal development yields greater morphometric precision over traditional clear-staining methods
    • Oest M.E., Jones J.C., Hatfield C., Prater M.R. Micro-CT evaluation of murine fetal skeletal development yields greater morphometric precision over traditional clear-staining methods. Birth Defects Res. B Dev. Reprod. Toxicol. 2008, 83:582-589.
    • (2008) Birth Defects Res. B Dev. Reprod. Toxicol. , vol.83 , pp. 582-589
    • Oest, M.E.1    Jones, J.C.2    Hatfield, C.3    Prater, M.R.4
  • 28
    • 34249879240 scopus 로고    scopus 로고
    • Staining methods for magnetic resonance microscopy of the rat fetus
    • Petiet A., Hedlund L., Johnson G.A. Staining methods for magnetic resonance microscopy of the rat fetus. J. Magn. Reson. Imaging 2007, 25:1192-1198.
    • (2007) J. Magn. Reson. Imaging , vol.25 , pp. 1192-1198
    • Petiet, A.1    Hedlund, L.2    Johnson, G.A.3
  • 29
    • 50449097485 scopus 로고    scopus 로고
    • High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database
    • Petiet A.E., Kaufman M.H., Goddeeris M.M., Brandenburg J., Elmore S.A., Johnson G.A. High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database. Proc. Natl Acad. Sci. USA 2008, 105:12331-12336.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 12331-12336
    • Petiet, A.E.1    Kaufman, M.H.2    Goddeeris, M.M.3    Brandenburg, J.4    Elmore, S.A.5    Johnson, G.A.6
  • 31
    • 17144446415 scopus 로고    scopus 로고
    • Rest-activity patterns in children with hypopituitarism
    • Rivkees S.A. Rest-activity patterns in children with hypopituitarism. Pediatrics 2003, 111:e720-e724.
    • (2003) Pediatrics , vol.111
    • Rivkees, S.A.1
  • 35
    • 57449107357 scopus 로고    scopus 로고
    • Voxel-based morphometry in the R6/2 transgenic mouse reveals differences between genotypes not seen with manual 2D morphometry
    • Sawiak S.J., Wood N.I., Williams G.B., Morton A.J., Carpenter T.A. Voxel-based morphometry in the R6/2 transgenic mouse reveals differences between genotypes not seen with manual 2D morphometry. Neurobiol. Dis. 2009, 33:20-27.
    • (2009) Neurobiol. Dis. , vol.33 , pp. 20-27
    • Sawiak, S.J.1    Wood, N.I.2    Williams, G.B.3    Morton, A.J.4    Carpenter, T.A.5
  • 36
    • 9444292864 scopus 로고    scopus 로고
    • Making the mouse embryo transparent: identifying developmental malformations using magnetic resonance imaging
    • Schneider J.E., Bhattacharya S. Making the mouse embryo transparent: identifying developmental malformations using magnetic resonance imaging. Birth Defects Res. C Embryo Today 2004, 72:241-249.
    • (2004) Birth Defects Res. C Embryo Today , vol.72 , pp. 241-249
    • Schneider, J.E.1    Bhattacharya, S.2
  • 37
    • 0037322088 scopus 로고    scopus 로고
    • High-resolution imaging of normal anatomy, and neural and adrenal malformations in mouse embryos using magnetic resonance microscopy
    • Schneider J.E., Bamforth S.D., Farthing C.R., Clarke K., Neubauer S., Bhattacharya S. High-resolution imaging of normal anatomy, and neural and adrenal malformations in mouse embryos using magnetic resonance microscopy. J. Anat. 2003, 202:239-247.
    • (2003) J. Anat. , vol.202 , pp. 239-247
    • Schneider, J.E.1    Bamforth, S.D.2    Farthing, C.R.3    Clarke, K.4    Neubauer, S.5    Bhattacharya, S.6
  • 38
    • 0037330784 scopus 로고    scopus 로고
    • Rapid identification and 3D reconstruction of complex cardiac malformations in transgenic mouse embryos using fast gradient echo sequence magnetic resonance imaging
    • Schneider J.E., Bamforth S.D., Farthing C.R., Clarke K., Neubauer S., Bhattacharya S. Rapid identification and 3D reconstruction of complex cardiac malformations in transgenic mouse embryos using fast gradient echo sequence magnetic resonance imaging. J. Mol. Cell. Cardiol. 2003, 35:217-222.
    • (2003) J. Mol. Cell. Cardiol. , vol.35 , pp. 217-222
    • Schneider, J.E.1    Bamforth, S.D.2    Farthing, C.R.3    Clarke, K.4    Neubauer, S.5    Bhattacharya, S.6
  • 39
    • 1542284676 scopus 로고    scopus 로고
    • High-resolution, high-throughput magnetic paragraph sign resonance imaging of mouse embryonic paragraph sign anatomy using a fast gradient-echo sequence
    • Schneider J.E., Bamforth S.D., Grieve S.M., Clarke K., Bhattacharya S., Neubauer S. High-resolution, high-throughput magnetic paragraph sign resonance imaging of mouse embryonic paragraph sign anatomy using a fast gradient-echo sequence. Magma 2003, 16:43-51.
    • (2003) Magma , vol.16 , pp. 43-51
    • Schneider, J.E.1    Bamforth, S.D.2    Grieve, S.M.3    Clarke, K.4    Bhattacharya, S.5    Neubauer, S.6
  • 41
    • 4444355803 scopus 로고    scopus 로고
    • Optical projection tomography
    • Sharpe J. Optical projection tomography. Annu. Rev. Biomed. Eng. 2004, 6:209-228.
    • (2004) Annu. Rev. Biomed. Eng. , vol.6 , pp. 209-228
    • Sharpe, J.1
  • 44
    • 0032762144 scopus 로고    scopus 로고
    • An overlap invariant entropy measure of 3D medical image alignment
    • Studholme C., Hill D., Hawkes D. An overlap invariant entropy measure of 3D medical image alignment. Pattern Recognit 1999, 32:71-86.
    • (1999) Pattern Recognit , vol.32 , pp. 71-86
    • Studholme, C.1    Hill, D.2    Hawkes, D.3
  • 45
    • 0036338736 scopus 로고    scopus 로고
    • Phenotyping transgenic embryos: a rapid 3-D screening method based on episcopic fluorescence image capturing
    • Weninger W.J., Mohun T. Phenotyping transgenic embryos: a rapid 3-D screening method based on episcopic fluorescence image capturing. Nat. Genet. 2002, 30:59-65.
    • (2002) Nat. Genet. , vol.30 , pp. 59-65
    • Weninger, W.J.1    Mohun, T.2
  • 47
    • 0345415035 scopus 로고    scopus 로고
    • Three-dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging
    • Zhang J., Richards L.J., Yarowsky P., Huang H., van Zijl P.C.M., Mori S. Three-dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging. Neuroimage 2003, 20:1639-1648.
    • (2003) Neuroimage , vol.20 , pp. 1639-1648
    • Zhang, J.1    Richards, L.J.2    Yarowsky, P.3    Huang, H.4    van Zijl, P.C.M.5    Mori, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.