메뉴 건너뛰기




Volumn 29, Issue 2, 2013, Pages 246-254

An effective framework for reconstructing gene regulatory networks from genetical genomics data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE EXPRESSION; GENE REGULATORY NETWORK; GENETICS; GENOMICS; GENOTYPE; METHODOLOGY; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; SACCHAROMYCES CEREVISIAE;

EID: 84872528061     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts679     Document Type: Article
Times cited : (10)

References (32)
  • 1
    • 22144454660 scopus 로고    scopus 로고
    • Genetical genomics analysis of a yeast segregant population for transcription network inference
    • DOI 10.1534/genetics.105.041103
    • Bing, N. and Hoeschele, I. (2005) Genetical genomic analysis of a yeast segregant population for transcription network inference. Genetics, 170, 533-542. (Pubitemid 40980657)
    • (2005) Genetics , vol.170 , Issue.2 , pp. 533-542
    • Bing, N.1    Hoeschele, I.2
  • 2
    • 0036843965 scopus 로고    scopus 로고
    • Gene networks: How to put the function in genomics
    • DOI 10.1016/S0167-7799(02)02053-X, PII S016777990202053X
    • Brazhnik, P. et al. (2002) Gene networks: how to put the function in genomics. Trends Biotechnol, 20, 467-472. (Pubitemid 35292359)
    • (2002) Trends in Biotechnology , vol.20 , Issue.11 , pp. 467-472
    • Brazhnik, P.1    De La Fuente, A.2    Mendes, P.3
  • 6
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill, G.A. and Doerge, R.W. (1994) Empirical threshold values for quantitative trait mapping. Genetics, 138, 963-971. (Pubitemid 24337818)
    • (1994) Genetics , vol.138 , Issue.3 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 8
  • 9
    • 0035400051 scopus 로고    scopus 로고
    • Genetical genomics: The added value from segregation
    • DOI 10.1016/S0168-9525(01)02310-1, PII S0168952501023101
    • Jansen, R. and Nap, N. (2001) Genetical genomics: the added value from segregation. Trends Genet., 17, 388-391. (Pubitemid 32545383)
    • (2001) Trends in Genetics , vol.17 , Issue.7 , pp. 388-391
    • Jansen, R.C.1    Nap, J.-P.2
  • 10
    • 0037306536 scopus 로고    scopus 로고
    • Studying complex biological systems using multifactorial perturbation
    • DOI 10.1038/nrg996
    • Jansen, R. (2003) Studying complex biological systems using multifactorial perturbation. Nat. Rev. Genet., 4, 145-151. (Pubitemid 36150686)
    • (2003) Nature Reviews Genetics , vol.4 , Issue.2 , pp. 145-151
    • Jansen, R.C.1
  • 12
    • 34447551397 scopus 로고    scopus 로고
    • Structural and functional analysis of cellular networks with CellNetAnalyzer
    • Klamt, S. et al. (2007) Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biol., 1, 2.
    • (2007) BMC Systems Biol. , vol.1 , pp. 2
    • Klamt, S.1
  • 13
    • 77955867869 scopus 로고    scopus 로고
    • TRANSWESD: Inferring cellular networks with transitive reduction
    • Klamt, S. et al. (2010) TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics, 26, 2160-2168.
    • (2010) Bioinformatics , vol.26 , pp. 2160-2168
    • Klamt, S.1
  • 16
    • 45149096374 scopus 로고    scopus 로고
    • Gene network inference via structural equation modeling in genetical genomics experiments
    • Liu, B. et al. (2008) Gene network inference via structural equation modeling in genetical genomics experiments. Genetics, 178, 1763-1776.
    • (2008) Genetics , vol.178 , pp. 1763-1776
    • Liu, B.1
  • 17
    • 84898535406 scopus 로고    scopus 로고
    • Inferring Gene Regulatory Networks from Genetical Genomics Data
    • Das, S. et al. (eds.) IGI Global, Hershey, PA
    • Liu, B. et al. (2010) Inferring Gene Regulatory Networks from Genetical Genomics Data. In Das, S. et al. (eds.) Computational Methodologies in Gene Regulatory Networks. IGI Global, Hershey, PA, pp. 79-107.
    • (2010) Computational Methodologies in Gene Regulatory Networks , pp. 79-107
    • Liu, B.1
  • 18
    • 67649867440 scopus 로고    scopus 로고
    • Detection and interpretation of expression quantitative trait loci (eQTL)
    • Michaelson, J.J. et al. (2009) Detection and interpretation of expression quantitative trait loci (eQTL). Methods, 48, 265-276.
    • (2009) Methods , vol.48 , pp. 265-276
    • Michaelson, J.J.1
  • 19
    • 77957342854 scopus 로고    scopus 로고
    • Data-driven assessment of eQTL mapping methods
    • Michaelson, J.J. et al. (2010) Data-driven assessment of eQTL mapping methods. BMC Genomics, 11, 502.
    • (2010) BMC Genomics , vol.11 , pp. 502
    • Michaelson, J.J.1
  • 21
    • 80051929549 scopus 로고    scopus 로고
    • Simulating systems genetics data with SysGenSIM
    • Pinna, A. et al. (2011) Simulating systems genetics data with SysGenSIM. Bioinformatics, 27, 2459-2462.
    • (2011) Bioinformatics , vol.27 , pp. 2459-2462
    • Pinna, A.1
  • 22
    • 77949644952 scopus 로고    scopus 로고
    • Towards a rigorous assessment of systems biology models: The DREAM3 Challenges
    • Prill, R.J. et al. (2010) Towards a rigorous assessment of systems biology models: the DREAM3 Challenges. PLoS One, 5, 9202.
    • (2010) PLoS One , vol.5 , pp. 9202
    • Prill, R.J.1
  • 23
    • 80052592949 scopus 로고    scopus 로고
    • Crowdsourcing network inference: The DREAM predictive signaling network challenge
    • Prill, R.J. et al. (2011) Crowdsourcing network inference: the DREAM predictive signaling network challenge. Sci. Signal., 4, mr7.
    • (2011) Sci. Signal. , vol.4
    • Prill, R.J.1
  • 24
    • 77955817629 scopus 로고    scopus 로고
    • Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    • Reimand, J. et al. (2010) Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Res., 38, 4768-4777.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4768-4777
    • Reimand, J.1
  • 25
    • 33750204290 scopus 로고    scopus 로고
    • Genetics of global gene expression
    • DOI 10.1038/nrg1964, PII NRG1964
    • Rockman, M.V. and Kruglyak, L. (2006) Genetics of global gene expression. Nat. Rev. Genet., 7, 862-872. (Pubitemid 44607102)
    • (2006) Nature Reviews Genetics , vol.7 , Issue.11 , pp. 862-872
    • Rockman, M.V.1    Kruglyak, L.2
  • 26
    • 57649124192 scopus 로고    scopus 로고
    • Reverse engineering the genotype-phenotype map with natural genetic variation
    • Rockman, M.V. (2008) Reverse engineering the genotype-phenotype map with natural genetic variation. Nature, 456, 738-744.
    • (2008) Nature , vol.456 , pp. 738-744
    • Rockman, M.V.1
  • 28
    • 63849210631 scopus 로고    scopus 로고
    • Lessons from the DREAM2 challenges
    • Stolovitzky, G. et al. (2009) Lessons from the DREAM2 challenges. Ann. NY Acad. Sci., 1158, 159-195.
    • (2009) Ann. NY Acad. Sci. , vol.1158 , pp. 159-195
    • Stolovitzky, G.1
  • 29
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J. R. Stat. Soc. Series B (Methodol.), 58, 267-288.
    • (1996) J. R. Stat. Soc. Series B (Methodol.) , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 30
    • 84455173311 scopus 로고    scopus 로고
    • Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis
    • Vignes, M. et al. (2011) Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis. PLoS ONE, 6, e29165.
    • (2011) PLoS ONE , vol.6
    • Vignes, M.1
  • 31
    • 34247556038 scopus 로고    scopus 로고
    • Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations
    • Zhu, J. et al. (2007) Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations. PLoS Comput. Biol., 3, e69.
    • (2007) PLoS Comput. Biol. , vol.3
    • Zhu, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.