-
1
-
-
22144454660
-
Genetical genomics analysis of a yeast segregant population for transcription network inference
-
DOI 10.1534/genetics.105.041103
-
Bing, N. and Hoeschele, I. (2005) Genetical genomic analysis of a yeast segregant population for transcription network inference. Genetics, 170, 533-542. (Pubitemid 40980657)
-
(2005)
Genetics
, vol.170
, Issue.2
, pp. 533-542
-
-
Bing, N.1
Hoeschele, I.2
-
2
-
-
0036843965
-
Gene networks: How to put the function in genomics
-
DOI 10.1016/S0167-7799(02)02053-X, PII S016777990202053X
-
Brazhnik, P. et al. (2002) Gene networks: how to put the function in genomics. Trends Biotechnol, 20, 467-472. (Pubitemid 35292359)
-
(2002)
Trends in Biotechnology
, vol.20
, Issue.11
, pp. 467-472
-
-
Brazhnik, P.1
De La Fuente, A.2
Mendes, P.3
-
4
-
-
13444306165
-
The landscape of genetic complexity across 5,700 gene expression traits in yeast
-
DOI 10.1073/pnas.0408709102
-
Brem, R.B. and Kruglyak, L. (2005) The landscape of genetic complexity across 5, 700 gene expression traits in yeast. PNAS, 102, 1572-1577. (Pubitemid 40209209)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.5
, pp. 1572-1577
-
-
Brem, R.B.1
Kruglyak, L.2
-
5
-
-
19544378364
-
Methodological aspects of the genetic dissection of gene expression
-
DOI 10.1093/bioinformatics/bti241
-
Carlborg, O. et al. (2005) Methodological aspects of the genetic dissection of gene expression. Bioinformatics, 21, 2383-2393. (Pubitemid 40731594)
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2383-2393
-
-
Carlborg, O.1
De Koning, D.J.2
Manly, K.F.3
Chesler, E.4
Williams, R.W.5
Haley, C.S.6
-
6
-
-
0028151261
-
Empirical threshold values for quantitative trait mapping
-
Churchill, G.A. and Doerge, R.W. (1994) Empirical threshold values for quantitative trait mapping. Genetics, 138, 963-971. (Pubitemid 24337818)
-
(1994)
Genetics
, vol.138
, Issue.3
, pp. 963-971
-
-
Churchill, G.A.1
Doerge, R.W.2
-
8
-
-
84898521305
-
What are Gene Regulatory Networks?
-
Das, S. et al. (eds.) IGI Global, Hershey, PA
-
de la Fuente, A. (2010) What are Gene Regulatory Networks?. In Das, S. et al. (eds.) Computational Methodologies in Gene Regulatory Networks. IGI Global, Hershey, PA, pp. 1-27.
-
(2010)
Computational Methodologies in Gene Regulatory Networks
, pp. 1-27
-
-
De La Fuente, A.1
-
9
-
-
0035400051
-
Genetical genomics: The added value from segregation
-
DOI 10.1016/S0168-9525(01)02310-1, PII S0168952501023101
-
Jansen, R. and Nap, N. (2001) Genetical genomics: the added value from segregation. Trends Genet., 17, 388-391. (Pubitemid 32545383)
-
(2001)
Trends in Genetics
, vol.17
, Issue.7
, pp. 388-391
-
-
Jansen, R.C.1
Nap, J.-P.2
-
10
-
-
0037306536
-
Studying complex biological systems using multifactorial perturbation
-
DOI 10.1038/nrg996
-
Jansen, R. (2003) Studying complex biological systems using multifactorial perturbation. Nat. Rev. Genet., 4, 145-151. (Pubitemid 36150686)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.2
, pp. 145-151
-
-
Jansen, R.C.1
-
11
-
-
33846818896
-
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
-
DOI 10.1073/pnas.0610429104
-
Keurentjes, J.J.B. et al. (2007) Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci. Proc. Natl Acad. Sci. USA, 104, 1708-1713. (Pubitemid 46214655)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.5
, pp. 1708-1713
-
-
Keurentjes, J.J.B.1
Fu, J.2
Terpstra, I.R.3
Garcia, J.M.4
Van Den Ackerveken, G.5
Snoek, L.B.6
Peeters, A.J.M.7
Vreugdenhil, D.8
Koornneef, M.9
Jansen, R.C.10
-
12
-
-
34447551397
-
Structural and functional analysis of cellular networks with CellNetAnalyzer
-
Klamt, S. et al. (2007) Structural and functional analysis of cellular networks with CellNetAnalyzer. BMC Systems Biol., 1, 2.
-
(2007)
BMC Systems Biol.
, vol.1
, pp. 2
-
-
Klamt, S.1
-
13
-
-
77955867869
-
TRANSWESD: Inferring cellular networks with transitive reduction
-
Klamt, S. et al. (2010) TRANSWESD: inferring cellular networks with transitive reduction. Bioinformatics, 26, 2160-2168.
-
(2010)
Bioinformatics
, vol.26
, pp. 2160-2168
-
-
Klamt, S.1
-
14
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
DOI 10.1126/science.1075090
-
Lee, T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevi-siae. Science, 298, 799-804. (Pubitemid 35231527)
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Benjamin Gordon, D.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.-B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
15
-
-
18144399354
-
Inferring gene transcriptional modulatory relations: A genetical genomics approach
-
DOI 10.1093/hmg/ddi124
-
Li, H. et al. (2005) Inferring gene transcriptional modulatory relations: a genetical genomics approach. Hum. Mol. Genet., 14, 1119-1125. (Pubitemid 40613901)
-
(2005)
Human Molecular Genetics
, vol.14
, Issue.9
, pp. 1119-1125
-
-
Li, H.1
Lu, L.2
Manly, K.F.3
Chesler, E.J.4
Bao, L.5
Wang, J.6
Zhou, M.7
Williams, R.W.8
Cui, Y.9
-
16
-
-
45149096374
-
Gene network inference via structural equation modeling in genetical genomics experiments
-
Liu, B. et al. (2008) Gene network inference via structural equation modeling in genetical genomics experiments. Genetics, 178, 1763-1776.
-
(2008)
Genetics
, vol.178
, pp. 1763-1776
-
-
Liu, B.1
-
17
-
-
84898535406
-
Inferring Gene Regulatory Networks from Genetical Genomics Data
-
Das, S. et al. (eds.) IGI Global, Hershey, PA
-
Liu, B. et al. (2010) Inferring Gene Regulatory Networks from Genetical Genomics Data. In Das, S. et al. (eds.) Computational Methodologies in Gene Regulatory Networks. IGI Global, Hershey, PA, pp. 79-107.
-
(2010)
Computational Methodologies in Gene Regulatory Networks
, pp. 79-107
-
-
Liu, B.1
-
18
-
-
67649867440
-
Detection and interpretation of expression quantitative trait loci (eQTL)
-
Michaelson, J.J. et al. (2009) Detection and interpretation of expression quantitative trait loci (eQTL). Methods, 48, 265-276.
-
(2009)
Methods
, vol.48
, pp. 265-276
-
-
Michaelson, J.J.1
-
19
-
-
77957342854
-
Data-driven assessment of eQTL mapping methods
-
Michaelson, J.J. et al. (2010) Data-driven assessment of eQTL mapping methods. BMC Genomics, 11, 502.
-
(2010)
BMC Genomics
, vol.11
, pp. 502
-
-
Michaelson, J.J.1
-
21
-
-
80051929549
-
Simulating systems genetics data with SysGenSIM
-
Pinna, A. et al. (2011) Simulating systems genetics data with SysGenSIM. Bioinformatics, 27, 2459-2462.
-
(2011)
Bioinformatics
, vol.27
, pp. 2459-2462
-
-
Pinna, A.1
-
22
-
-
77949644952
-
Towards a rigorous assessment of systems biology models: The DREAM3 Challenges
-
Prill, R.J. et al. (2010) Towards a rigorous assessment of systems biology models: the DREAM3 Challenges. PLoS One, 5, 9202.
-
(2010)
PLoS One
, vol.5
, pp. 9202
-
-
Prill, R.J.1
-
23
-
-
80052592949
-
Crowdsourcing network inference: The DREAM predictive signaling network challenge
-
Prill, R.J. et al. (2011) Crowdsourcing network inference: the DREAM predictive signaling network challenge. Sci. Signal., 4, mr7.
-
(2011)
Sci. Signal.
, vol.4
-
-
Prill, R.J.1
-
24
-
-
77955817629
-
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
-
Reimand, J. et al. (2010) Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets. Nucleic Acids Res., 38, 4768-4777.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4768-4777
-
-
Reimand, J.1
-
25
-
-
33750204290
-
Genetics of global gene expression
-
DOI 10.1038/nrg1964, PII NRG1964
-
Rockman, M.V. and Kruglyak, L. (2006) Genetics of global gene expression. Nat. Rev. Genet., 7, 862-872. (Pubitemid 44607102)
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.11
, pp. 862-872
-
-
Rockman, M.V.1
Kruglyak, L.2
-
26
-
-
57649124192
-
Reverse engineering the genotype-phenotype map with natural genetic variation
-
Rockman, M.V. (2008) Reverse engineering the genotype-phenotype map with natural genetic variation. Nature, 456, 738-744.
-
(2008)
Nature
, vol.456
, pp. 738-744
-
-
Rockman, M.V.1
-
27
-
-
22844446947
-
An integrative genomics approach to infer causal associations between gene expression and disease
-
DOI 10.1038/ng1589
-
Schadt, E.E. et al. (2005) An integraive genomics approach to infer causal associations between gene expression and disease. Nat. Genet., 37, 710-717. (Pubitemid 41754887)
-
(2005)
Nature Genetics
, vol.37
, Issue.7
, pp. 710-717
-
-
Schadt, E.E.1
Lamb, J.2
Yang, X.3
Zhu, J.4
Edwards, S.5
Thakurta, D.G.6
Sieberts, S.K.7
Monks, S.8
Reitman, M.9
Zhang, C.10
Lum, P.Y.11
Leonardson, A.12
Thieringer, R.13
Metzger, J.M.14
Yang, L.15
Castle, J.16
Zhu, H.17
Kash, S.F.18
Drake, T.A.19
Sachs, A.20
Lusis, A.J.21
more..
-
28
-
-
63849210631
-
Lessons from the DREAM2 challenges
-
Stolovitzky, G. et al. (2009) Lessons from the DREAM2 challenges. Ann. NY Acad. Sci., 1158, 159-195.
-
(2009)
Ann. NY Acad. Sci.
, vol.1158
, pp. 159-195
-
-
Stolovitzky, G.1
-
29
-
-
85194972808
-
Regression shrinkage and selection via the lasso
-
Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J. R. Stat. Soc. Series B (Methodol.), 58, 267-288.
-
(1996)
J. R. Stat. Soc. Series B (Methodol.)
, vol.58
, pp. 267-288
-
-
Tibshirani, R.1
-
30
-
-
84455173311
-
Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis
-
Vignes, M. et al. (2011) Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis. PLoS ONE, 6, e29165.
-
(2011)
PLoS ONE
, vol.6
-
-
Vignes, M.1
-
31
-
-
34247556038
-
Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations
-
Zhu, J. et al. (2007) Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations. PLoS Comput. Biol., 3, e69.
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Zhu, J.1
|