High-throughput microbial population genomics using the Cortex variation assembler

Bioinformatics

Volumn 29, Issue 2, 2013, Pages 275-276

  Iqbal, Zamin ^a   Turner, Isaac ^b   McVean, Gil ^a,b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b Department of Statistics ^*  (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; GENETIC VARIABILITY; GENOMICS; GENOTYPE; INDEL MUTATION; METAGENOMICS; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

GENETIC VARIATION; GENOMICS; GENOTYPE; INDEL MUTATION; METAGENOMICS; POLYMORPHISM, SINGLE NUCLEOTIDE; SOFTWARE;

MLCS; MLOWN;

EID: 84872519326     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts673     Document Type: Article

References (7)

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3. Iqbal, Z. et al. (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat. Genet., 199, 133-154.
4. Li, H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
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7. Young, B. et al. (2012) Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease. Proc. Natl Acad. Sci. USA, 109, 4550-4555.