Kutzneria buriramensis sp. nov., isolated from soil, and emended description of the genus Kutzneria

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue 1, 2013, Pages 47-52

  Suriyachadkun, Chanwit ^a   Ngaemthao, Wipaporn ^a   Chunhametha, Suwanee ^a   Tamura, Tomohiko ^b   Sanglier, Jean Jacques ^a,c  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^c NOVARTIS PHARMA AG   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; GENOMIC DNA; GLUCOSE; HYDROXYPHOSPHATIDYLETHANOLAMINE; MANNOSE; MENAQUINONE; MYCOLIC ACID; PEPTIDOGLYCAN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLMETHYLETHANOLAMINE; RHAMNOSE; RIBOSE; RNA 16S; SUGAR; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENOTYPE; KUTZNERIA BURIRAMENSIS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SOIL AMENDMENT; TAXONOMY; THAILAND; WHOLE CELL;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; THAILAND; VITAMIN K 2;

BACTERIA (MICROORGANISMS); KUTZNERIA; MYCELIUM (GENUS);

EID: 84872445962     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036533-0     Document Type: Article

References (33)

1. Arai, T. (1975). Culture Media for Actinomycetes. Tokyo: Japanese Society for Actinomycetes.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro- dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
6. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
7. Itoh, T., Kudo, T., Parenti, F. & Seino, A. (1989). Amended description of the genus Kineosporia, based on chemotaxonomic and morpho- logical studies. Int J Syst Bacteriol 39, 168-173.
8. Kampfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
9. Katsura, K., Kawasaki, H., Potacharoen, W., Saono, S., Seki, T., Yamada, Y., Uchimura, T. & Komagata, K. (2001). Asaia siamensis sp. nov., an acetic acid bacterium in the a-Proteobacteria. Int J Syst Evol Microbiol 51, 559-563.
10. Kawasaki, H., Hoshino, Y., Hirata, A. & Yamasato, K. (1993). Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria. Arch Microbiol 160, 358-362.
11. Kelly, K. L. (1964). Inter-Society Color Council- National Bureau of Standard Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Komagata, K. & Suzuki, K. I. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
14. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
15. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
16. Lechevalier, M. P., De Bievre, C. & Lechevalier, H. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composi- tion. Biochem Syst Ecol 5, 249-260.
17. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
18. Nonomura, H. & Hayakawa, M. (1988). New methods for the selective isolation of soil actinomycetes. In Biology of Actinomycetes, pp. 288- 293. Edited by Y. Okami, T. Beppu & H. Ogawara. Tokyo: Japan Scientific Societies Press.
19. Saito, H. & Miura, K. I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406- 425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
22. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
23. Stackebrandt, E., Kroppenstedt, R. M., Jahnke, K.-D., Kemmerling, C. & Gurtler, H. (1994). Transfer of Streptosporangium viridogriseum (Okuda et al. 1966), Streptosporangium viridogriseum subsp. kofuense (Nonomura and Ohara 1969), and Streptosporangium albidum (Furumai et al. 1968) to Kutzneria gen. nov. as Kutzneria viridogrisea comb. nov., Kutzneria kofuensis comb. nov., and Kutzneria albida comb. nov., respectively, and emendation of the genus Streptosporan- gium. Int J Syst Bacteriol 44, 265-269.
24. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
25. Suriyachadkun, C., Chunhametha, S., Thawai, C., Tamura, T., Potacharoen, W., Kirtikara, K. & Sanglier, J. J. (2009). Planotetraspora thailandica sp. nov., isolated from soil in Thailand. Int J Syst Evol Microbiol 59, 992-997.
26. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromato- graphy. FEMS Microbiol Lett 25, 125-128.
27. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A. (1994). A new genus of the order Actinomy- cetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193- 203.
28. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
29. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
30. Uchida, K. & Aida, K. (1984). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131-134.
31. Verlander, C. P. (1992). Detection of horseradish peroxidase by colorimetry. In Nonisotopic DNA Probe Techniques, pp. 185-201. Edited by L. J. Kricka. New York: Academic Press.
32. Williams, S. T. & Cross, T. (1971). Actinomycetes. Methods Microbiol 4, 295-334.
33. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T. & Komagata, K. (2000). Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the a- Proteobacteria. Int J Syst Evol Microbiol 50, 823-829.