First genetic linkage map in pistachio constructed using an interspecific cross between Pistacia vera L. and monoecious Pistacia atlantica Desf

Scientia Horticulturae

Volumn 151, Issue , 2013, Pages 30-37

  Turkeli, Yusa ^a   Kafkas, Salih ^b  

^a Ministry of Food   (Turkey)

^b CUKUROVA UNIVERSITY   (Turkey)

Author keywords

AFLP; Genetic mapping; ISSR; Pistachio; Pistacia vera L.; SRAP

Indexed keywords

AGRONOMY; BIOMARKER; GENETIC ANALYSIS; INTERSPECIFIC COMPETITION; MAPPING; POLYMORPHISM; POPULATION DENSITY; SELECTION; SEX DETERMINATION; TREE;

PISTACIA; PISTACIA ATLANTICA; PISTACIA VERA;

EID: 84872443121     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.11.024     Document Type: Article

References (63)

1. Ahmad R., Ferguson L., Soutwick S.M. Identification of pistachio (Pistacia vera L.) nuts with microsatellite markers. J. Am. Soc. Hort. Sci. 2003, 128:898-903.
2. Ahmad R., Ferguson L., Soutwick S.M. Molecular marker analyses of pistachio rootstocks by simple sequence repeats and sequence-related amplified polymorphisms. J. Hort. Sci. Biotechnol. 2005, 80:382-386.
3. Alwala S., Kimbeng C.A., Veremis J.C., Gravois K.A. Linkage mapping and genome analysis in a Saccharum interspecific cross using AFLP, SRAP and TRAP markers. Euphytica 2008, 164:37-51.
4. Arcade A., Anselin F., Faivre Rampant P., Lesage M.C., Paques L., Prat D. Application of AFLP, RAPD and ISSR markers to genetic mapping of European and Japanese larch. Theor. Appl. Genet. 2000, 100:299-307.
5. Beedanagari S.R., Dove S.K., Wood B.W., Conner P.J. A first linkage map of pecan cultivars based on RAPD and AFLP markers. Theor. Appl. Genet. 2005, 110:1127-1137.
6. Cavalcanti J.J.V., Wilkinson M.J. The first genetic maps of cashew (Anacardium occidentale L.). Euphytica 2007, 15:131-143.
7. Cervera M.T., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Slycken J.V., Montagu M.V., Boerjan W. Dense genetic linkage maps of three populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 2001, 158:787-809.
8. Crane J.C. Hermaphroditism in Pistacia. Calif. Agric. 1974, 28(2):3-4.
9. Doucleff M., Jin Y., Gao F., Riaz S., Krivanek A.F., Walker M.A. A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica. Theor. Appl. Genet. 2004, 109:1178-1187.
10. Doyle J.J., Doyle J.L. A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
11. Dufour P., Johnsson C., Antoine-Michard S., Cheng R., Murigneux A., Beckert M. Segregation distortion at marker loci: variation during microspore embryogenesis in maize. Theor. Appl. Genet. 2001, 102:993-1001.
12. Eujayl I., Baum M., Erskine W., Pehu E., Muehl-bauer F.J. The use of RAPD markers for lentil genetic mapping and evaluation of distorted F2 segregation. Euphytica 1997, 96:405-412.
13. FAOSTAT, 2010. Agricultural production, crops primary. http://apps.fao.org/faostat.
14. Faris J.D., Laddomada B., Gill B.S. Molecular mapping of segregation distortion loci in Aegilops tauschii. Genetics 1998, 149:319-327.
15. Fishman L., Kelly A.J., Morgan E., Willis J.H. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 2001, 159:1701-1716.
16. Foolad M.R., Arulsekar S., Becerra V., Bliss F.A. A genetic map of Prunus based on an interspecific cross between peach and almond. Theor. Appl. Genet. 1995, 91:262-269.
17. Gao L., Liu N., Huang B., Hu X. Phylogenetic analysis and genetic mapping of Chinese Hedychium using SRAP markers. Sci. Hortic. 2008, 117:369-377.
18. Goulao L., Valdiviesso T., Santana C., Oliveira C.M. Comparison between phenetic characterisation using RAPD and ISSR markers and phenotypic data of cultivated chestnut (Castanea sativa Mill.). Genet. Res. Crop. Evol. 2001, 48:329-338.
19. Grattapaglia D., Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137:1121-1137.
20. Hanley S., Barker J.H.A., Van Ooijen J.M., Aldam C., Harris S.L., Ahman I., Larsson S., Karp A. A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers. Theor. Appl. Genet. 2002, 105:1087-1096.
21. Hemmat M., Weeden N.F., Manganaris A.G., Lawson D.M. Molecular marker linkage map for apple. J. Hered. 1994, 85:4-11.
22. Hormaza J.I., Dollo L., Polito V.S. Identification of a RAPD marker linked to sex determination in Pistacia vera using bulked segregant analysis. Theor. Appl. Genet. 1994, 89:9-13.
23. Hurdato M.A., Romero C., Vilanova S., Abbott A.G., Liacer G., Badenes M.L. Genetic linkage maps of two apricot cultivars (Prunus armeniaca L.) and mapping of PPV (sharka) resistance. Theor. Appl. Genet. 2002, 105:182-191.
24. Ila H.B., Kafkas S., Topaktaş M. Chromosome numbers of four Pistacia (anacardiaceae) species. J. Hort. Sci. Biotechnol. 2003, 78(1):35-38.
25. Kafkas S., Kaska N., Perl-Treves R. Unusual Pistacia atlantica Desf. (Anacardiaceae) monoecious sex types in the Yunt mountains of the Manisa province of Turkey. Israel J. Plant Sci. 2000, 48(4):277-280.
26. Kafkas S., Perl-Treves P. Morphological and molecular phylogeny of Pistacia species in Turkey. Theor. Appl. Genet. 2001, 102:908-915.
27. Kafkas S., çetiner S., Perl-Treves R. Development of sex-associated RAPD markers in wild Pistacia species. J. Hort. Sci. Biotechnol. 2001, 76(2):242-246.
28. Kafkas S., Acar I., Gozel H. A project on developing monoecious pistachio (Pistacia vera L.) populations and determination of sex mechanism in Pistacia. XIII GIEMPA meeting on almonds and pistachios. Options Mediterran. 2003, 63:57-60.
29. Kafkas S. Phylogenetic analysis of the genus Pistacia by AFLP markers. Plant Syst. Evol. 2006, 262:113-124.
30. Kafkas S., Kaska N., Wassimi A.N., Padulosi S. Molecular characterisation of Afghan pistachio accessions by amplified fragment length polymorphisms (AFLPs). J. Hort. Sci. Biotechnol. 2006, 81(5):864-868.
31. Kafkas S., özkan H., Ak B.E., Acar I., Atli{dotless} H.S., Koyuncu S. Detecting DNA polymorphism and genetic diversity in a wide pistachio germplasm: comparison of AFLP, ISSR and RAPD markers. J. Am. Soc. Hort. Sci. 2006, 131(4):522-529.
32. Kafkas S., Doĝan Y., Sabi{dotless}r A., Turan A., şeker H. Genetic characterization of hazelnut (Corylus avellana L.) cultivars from Turkey using molecular markers. HortScience 2009, 44(6):1557-1561.
33. Kafkas S., Ercişli S., Doĝan Y., Ertürk Y., Haznedar A., Sekban R. Polymorphism and genetic relationships among tea genotypes from Turkey revealed by amplified fragment length polymorphism markers. J. Am. Soc. Hort. Sci. 2009, 134(4):428-434.
34. Karimi H.R., Kafkas S. Genetic relationships among Pistacia species studied by SAMPL markers. Plant Syst. Evol. 2011, 297:207-212.
35. Kennis K., Keulemans J. Genetics linkage maps of two apple cultivars (Malus x domestica Borkh.) based on AFLP and microsatellite markers. Mol. Breed. 2005, 15:205-219.
36. Kosambi D.D. The estimation of map distances from recombination values. Ann. Eugen 1994, 12:172-175.
37. Kuang H., Richardson T., Carson S., Wilcox P., Bongarten B. Genetic analysis of inbreeding depression in plus Tree 850.55 of Pinus radiata D. Don. I. Genetic map with distorted markers. Theor. Appl. Genet. 1999, 98:697-703.
38. Kuru C., Ozsabuncuoglu I.H. Yabani Pistacia türlerinin asi{dotless}lanmasi{dotless}nda sorunlar ve cozum yollari{dotless}. Türkiye 1. Antepfi{dotless}sti{dotless}gi{dotless} Simpozyumu, 11-12 September, 1990 1990, 51-57.
39. La Rosa R., Angiolillo A., Guerrero C., Pellegrini M., Rallo L., Besnard G., Berville A., Martin A. A first linkage map of olive (Olea europaea L.) cultivars using RAPD, AFLP, RFLP and SSR markers. Theor. Appl. Genet. 2003, 106:1273-1282.
40. Lambert P., Hagen L.S., Arus P., Audergon J.M. Genetic linkage maps of two apricot cultivars (Prunus armeniaca L.) compared with the almond 'Texas' x peach 'Earlygold' reference map for Prunus. Theor. Appl. Genet. 2004, 108:1120-1130.
41. Lanteri S., Acquadro A., Comino C., Mauro R., Mauromicale G., Portis E. A first linkage map of globe artichoke (Cynara cardunculus var. Scolymus L.) based on AFLP, S-SAP, M-AFLP and microsatellite markers. Theor. Appl. Genet. 2006, 112:1532-1542.
42. Li G., Quiros C.F. Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 2001, 103:455-461.
43. Liebhard R., Koller B., Gianfranceschi L., Gessler C. Creating a saturated reference map for the apple (Malus x domestica Borkh.) genome. Theor. Appl. Genet. 2003, 106:1497-1508.
44. Lowe K.M., Walker M.A. Genetic linkage map of the interspecific grape rootstock cross 'Ramsey' (Vitis champinii) x 'Riparia glorie' (Vitis riparia). Theor. Appl. Genet. 2006, 112:1582-1592.
45. Nikaido A., Yoshimaru H., Tsumura Y., Suyama Y., Murai M., Nagasaka K. Segregation distortion for AFLP markers in Cryptomeria japonica D. Don. Genes Genet. Syst. 1999, 74:55-59.
46. Nikaido A.M., Ujino T., Iwata H., Yoshimura K., Yoshimura H., Suyama Y., Murai M., Nagasaka K., Tsumura Y. AFLP and CAPS linkage maps of Cryptomeria japonica. Theor. Appl. Genet. 2000, 100:825-831.
47. Oliveira A.C., Bastianel M., Cristofani-Yaly M., Amaral A.M., Machado M.A. Development of genetic maps of the Citrus varieties 'Murcott' tangor and Pera' sweet orange by using fluorescent AFLP markers. J. Appl. Genet. 2007, 48:219-231.
48. Ozbek S., Ayfer M. An hermaphrodite pistachio found in the vicinity of antep, Turkey. Proc. Am. Soc. Hort. Sci. 1958, 72:240-241.
49. Pilien K., Steinbücken G., Hermann R.G., Jung C. An extended linkage map of sugar beet (Beta vulgaris L.) including nine putative lethal genes and the restorer gene X. Plant Breed. 1993, 111:265-272.
50. Plomion C., Bahrman N., Durel C.E., O'malley D.M. Genomic mapping in Pinus pinaster (mariime pine) using RAPD and protein markers. Heredity 1995, 74:661-668.
51. Powell W., Machray G.C., Provan J. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1996, 1(7):215-221.
52. Quillet M.C., Madjidian N., Griveau Y., Serieys H., Tersac Scaps M., Lorieux M., Berville A. Mapping genetic factors controlling polen viability in an interspecific cross in Helianthus sect. Helianthus. Theor. Appl. Genet. 1995, 91:1195-1202.
53. Riaz S., Dangl G.S., Edwards K.J., Meredith C.P. A microsatellite based framework linkage map of Vitis vinifera L. Theor. Appl. Genet. 2004, 108:864-872.
54. Shepherd M., Cross M., Dieters M.J., Henry R. Genetic maps for Pinus elliottii var. Elliottii and Pinus caribaea var. Hondurensis using AFLP and microsatellite markers. Theor. Appl. Genet. 2003, 106:1409-1419.
55. Sondur S.N., Manshardt R.M., Stiles J.I. A genetic linkage map of papaya based on random amplified polymorphic DNA markers. Theor. Appl. Genet. 1996, 93:547-553.
56. ® 4.0: software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Plant Research International 2006.
57. Venkateswarlu M., Raje, Urs S., Surendra Nath B., Shashidhar H.E., Maheswaran M., Veeraiah T.M., Sabitha M.G. A first genetic linkage map of mulberry (Morus spp.) using RAPD, ISSR and SSR markers and pseudo-testcross mapping strategy. Tree Genet. Genomes 2006, 3:15-24.
58. Vos P., Hogers L., Bleeker M., Van de lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M., Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 1995, 23:4407-4414.
59. Wei Z., Zhang K., Yang C., Liu G., Liu G., Lian L., Zhang H. Genetic linkage maps of Betula platyphylla Suk. based on ISSR and AFLP markers. Plant Mol. Biol. Rep. 2010, 28:169-175.
60. Whitehouse W.E. The pistachio nut-a new crop for the western united states. Econ. Bot. 1957, 11:281-321.
61. Yaltirik F. Anacardiaceae. Flora of Turkey 1967, vol. 2:544-548. Edinburgh University Press, Edinburg, UK.
62. Zietkiewicz E., Rafalski A., Damian L. Genome fingerprinting by simple sequence repeat (SSR)- anchored polymerase chain reaction amplification. Genomics 1994, 20:176-183.
63. Zohary M. A monographical study of the genus Pistacia. Palestine J. Bot. 1952, 5:187-228.