Systematic changes to the apparent diffusion tensor of in vivo rat brain measured with an oscillating-gradient spin-echo sequence

NeuroImage

Volumn 70, Issue , 2013, Pages 10-20

  Kershaw, Jeff ^a,b   Leuze, Christoph ^c   Aoki, Ichio ^a   Obata, Takayuki ^d   Kanno, Iwao ^a   Ito, Hiroshi ^a   Yamaguchi, Yuki ^b   Handa, Hiroshi ^b  

^a NATIONAL INSTITUTE OF RADIOLOGICAL SCIENCES   (Japan)

^b TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^c MAX PLANCK INSTITUTE FOR HUMAN COGNITIVE AND BRAIN SCIENCES   (Germany)

^d NATIONAL INSTITUTE OF RADIOLOGICAL SCIENCES   (Japan)

Author keywords

Apparent diffusion tensor; Effective diffusion time; In vivo rat brain; Oscillating gradient spin echo; Restricted diffusion; Tissue microstructure

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BRAIN TISSUE; CORPUS CALLOSUM; DIFFUSION TENSOR IMAGING; FRACTIONAL ANISOTROPY; GRAY MATTER; IMAGE ANALYSIS; IMAGE PROCESSING; IN VIVO STUDY; MALE; MOTION; NEUROIMAGING; NONHUMAN; OSCILLATION; PRIORITY JOURNAL; RAT; SIGNAL DETECTION; TISSUE STRUCTURE; VISUAL CORTEX; WHITE MATTER;

ANIMALS; ANISOTROPY; BRAIN; DIFFUSION TENSOR IMAGING; MALE; RATS; RATS, SPRAGUE-DAWLEY;

EID: 84872352386     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2012.12.036     Document Type: Article

References (52)

1. Aggarwal M., Jones M.V., Calabresi P.A., Mori S., Zhang J. Probing mouse brain microstructure using oscillating gradient diffusion MRI. Magn. Reson. Med. 2012, 67:98-109.
2. Assaf Y., Cohen Y. Non-mono-exponential attenuation of water and N-acetyl aspartate signals due to diffusion in brain tissue. J. Magn. Reson. 1998, 131:69-85.
3. Assaf Y., Freidlin R.Z., Rohde G.K., Basser P.J. New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 2004, 52:965-978.
4. Assaf Y., Blumenfeld-Katzir T., Yovel Y., Basser P.J. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn. Reson. Med. 2008, 59:1347-1354.
5. Basser P.J., Pierpaoli C. Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI. J. Magn. Reson. B 1996, 111:209-219.
6. Basser P.J., Mattiello J., Le Bihan D. MR diffusion tensor spectroscopy and imaging. Biophys. J. 1994, 66:259-267.
7. Clark C.A., Le Bihan D. Water diffusion compartmentation and anisotropy at high b values in the human brain. Magn. Reson. Med. 2000, 44:852-859.
8. Clark C.A., Hedehus M., Moseley M. Diffusion time dependence of the apparent diffusion tensor in healthy human brain and white matter disease. Magn. Reson. Med. 2001, 45:1126-1129.
9. Colvin D.C., Yankeelov T.E., Does M.D., Yue Z., Quarles C., Gore J.C. New insights into tumor microstructure using temporal diffusion spectroscopy. Cancer Res. 2008, 68:5941-5947.
10. Colvin D.C., Jourquin J., Xu J., Does M.D., Estrada L., Gore J.C. Effects of intracellular organelles on the apparent diffusion coefficient of water molecules in cultured human embryonic kidney cells. Magn. Reson. Med. 2011, 65:796-801.
11. de Swiet T.M., Sen P.N. Time-dependent diffusion coefficient in a disordered medium. J. Chem. Phys. 1996, 104:206-209.
12. Demyanenko G.P., Schachner M., Anton E., Schmid R., Feng G., Sanes J., Maness P.F. Close homolog of L1 modulates area-specific neuronal positioning and dendrite orientation in the cerebral cortex. Neuron 2004, 44:423-437.
13. Does M.D., Parsons E.C., Gore J.C. Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain. Magn. Reson. Med. 2003, 49:206-215.
14. Doran M., Hajnal J.V., Van Bruggen N., King M.D., Young I.R., Bydder G.M. Normal and abnormal white matter tracts shown by MR imaging using directional diffusion weighted sequences. J. Comput. Assist. Tomogr. 1990, 14:865-873.
15. Efron B., Tibshirani R.J. An Introduction to the Bootstrap 1994, Chapman & Hall/CRC.
16. Goodman J.A., Kroenke C.D., Bretthorst G.L., Ackerman J.J.H., Neil J.J. Sodium ion apparent diffusion coefficient in living rat brain. Magn. Reson. Med. 2005, 53:1040-1045.
17. Grebenkov D.S. NMR survey of reflected Brownian motion. Rev. Mod. Phys. 2007, 79:1077-1137.
18. Gross B., Kosfeld R. Anendung der Spin-Echo-Methode der Messung der Selbstdiffusion. Messtechnik 1969, 77:171-177.
19. Helmer K.G., Dardzinski B.J., Sotak C.H. The application of porous-media theory to the investigation of time-dependent diffusion in in vivo systems. NMR Biomed. 1995, 8:297-306.
20. Horsfield M.A., Lai M., Webb S.L., Baker G.J., Tofts P.S., Turner R., Rudge P., Miller D.H. Apparent diffusion coefficients in benign and secondary progressive multiple sclerosis by nuclear magnetic resonance. Magn. Reson. Med. 1996, 36:393-400.
21. Kershaw J., Leuze C., Autio J., Shibata S., Obata T., Kanno I., Aoki I. Apparent diffusion anisotropy in rat cerebellum is altered at short effective diffusion-times using oscillating-gradient diffusion-tensor MRI. Proceedings of the Joint EUROMAR 2010 and 17th ISMAR Conference 2010, 296.
22. Kershaw J., Leuze C., Obata T., Kanno I., Aoki I. Changes to the fractional anisotropy and mean diffusivity of in vivo rat brain measured at short effective diffusion times. Proceedings of the 19th Annual Meeting of ISMRM 2011, 409.
23. Latour L.L., Svoboda K., Mitra P.P., Sotak C.H. Time-dependent diffusion of water in a biological model system. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:1229-1233.
24. Latour L.L., Kleinberg R.L., Mitra P.P., Sotak C.H. Pore-size distributions and tortuosity in heterogeneous porous media. J. Magn. Reson. 1995, 112:83-91.
25. Le Bihan D., Turner R., Douek P. Is water diffusion restricted in human brain white matter? An echo-planar imaging study. Neuroreport 1993, 4:887-890.
26. Leuze C.W.U., Anwander A., Bazin P.-L., Dhital B., Stüber C., Reimann K., Geyer S., Turner R. Layer-specific intracortical connectivity revealed with diffusion MRI. Cereb. Cortex 2012, 10.1093/cercor/bhs311.
27. Mardia K.V., Jupp P.E. Directional Statistics 2000, Wiley.
28. Meier C., Dreher W., Leibfritz D. Diffusion in compartmental systems. II. Diffusion-weighted measurements of rat brain tissue in vivo and postmortem at very large b-values. Magn. Reson. Med. 2003, 50:510-514.
29. Mitra P.P., Sen P.N., Schwartz L.M., Le Doussal P. Diffusion propagator as a probe of the structure of porous media. Phys. Rev. Lett. 1992, 24:3555-3558.
30. Mitra P.P., Sen P.N., Schwartz L.M. Short-time behaviour of the diffusion coefficient as geometrical probe of porous media. Phys. Rev. B 1993, 47:8565-8574.
31. Moonen C.T.W., Pekar J., de Vleeschouwer M.H.M., van Gelderen P., van Zijl P.C.M., DesPres D. Restricted and anisotropic displacement of water in healthy cat brain and in stroke studied by NMR diffusion imaging. Magn. Reson. Med. 1991, 19:327-332.
32. Moseley M., Cohen Y., Kucharczyk J., Mintorovitch J., Asgari H.S., Wendland M.F., Tsuruda J., Norman D. Diffusion-weighted MR imaging of anisotropic water diffusion in cat central nervous system. Radiology 1990, 176:439-445.
33. Niendorf T., Norris D.G., Leibfritz D. Detection of apparent restricted diffusion in healthy rat brain at short diffusion times. Magn. Reson. Med. 1994, 32:672-677.
34. Niendorf T., Dijkhuizen R.M., Norris D.G., van Lookeren Campagne M., Nicolay K. Biexponential attenuation in various states of brain tissue: implications for diffusion-weighted imaging. Magn. Reson. Med. 1996, 36:847-857.
35. Novikov D.S., Kiselev V.G. Surface-to-volume ratio with oscillating gradients. J. Magn. Reson. 2011, 210:141-145.
36. Parsons E.C., Does M.D., Gore J.C. Modified oscillating gradient pulses for direct sampling of the diffusion spectrum suitable for imaging sequences. Magn. Reson. Imaging 2003, 21:279-285.
37. Parsons E.C., Does M.D., Gore J.C. Temporal diffusion spectroscopy: theory and implementation in restricted systems using oscillating gradients. Magn. Reson. Med. 2006, 55:75-84.
38. Pfeuffer J., Provencher S.W., Gruetter R. Water diffusion in rat brain in vivo as detected at very large b values is multicompartmental. MAGMA 1999, 8:98-108.
39. Pilatus U., Shim H., Artemov D., Davis D., van Zijl P.C.M., Glickson J.D. Intracellular volume and apparent diffusion constants of perfused cancer cell cultures, as measured by NMR. Magn. Reson. Med. 1997, 37:825-832.
40. Schachter M., Does M.D., Anderson A.W., Gore J.C. Measurement of restricted diffusion using an oscillating gradient spin-echo sequence. J. Magn. Reson. 2000, 147:232-237.
41. Schwartzman A., Dougherty R.F., Taylor J.E. Cross-subject comparison of principal diffusion direction maps. Magn. Reson. Med. 2005, 53:1423-1431.
42. Sen P.N. Time-dependent diffusion coefficient as a probe of the permeability of the pore wall. J. Chem. Phys. 2003, 119:9871-9876. (erratum 120, 11965-11966).
43. Sen P.N. Time-dependent diffusion coefficient as a probe of geometry. Concepts Magn. Reson. 2004, 23A:1-21.
44. Sukstanskii A.L., yablonskiy D.A., Ackerman J.J.H. Effects of permeable boundaries on the diffusion-attenuated MR signal: insights from a one-dimensional model. J. Magn. Reson. 2004, 170:56-66.
45. Tanner J.E. Transient diffusion in a system partitioned by permeable barriers. Application to NMR measurements with a pulsed field gradient. J. Chem. Phys. 1978, 69:1748-1754.
46. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 2004, 52:1358-1372.
47. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 2002, 48:577-582.
48. van Gelderen P., de Vleeschouwer M.H.M., DesPres D., Pekar J., van Zijl P.C.M., Moonen C.T.W. Water diffusion and acute stroke. Magn. Reson. Med. 1994, 31:154-163.
49. Xu J., Does M.D., Gore J.C. Sensitivity of MR diffusion measurements to variations in intracellular structure: effects of nuclear size. Magn. Reson. Med. 2009, 61:828-833.
50. Xu J., Jeong H.-K., Does M.D., Anderson A.W., Chen L., Gore J.C. Dependence of fractional anisotropy on diffusion time: a frequency-domain analysis using temporal diffusion spectroscopy. Proceedings of the 18th Annual Meeting of ISMRM 2010, 4038.
51. Xu J., Xie J., Jourquin J., Colvin D.C., Does M.D., Quaranta V., Gore J.C. Influence of cell cycle phase on apparent diffusion coefficient in synchronized cells detected using temporal diffusion spectroscopy. Magn. Reson. Med. 2011, 65:920-926.
52. Xu J., Harkins K.D., Horch R.A., Does M.D., Gore J.C. Dependence of temporal diffusion spectroscopy on axon size in white matter tracts of rat spinal cord. Proceedings of the 20th Annual Meeting of ISMRM 2012, 351.