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Volumn 65, Issue 2, 2013, Pages 97-105

Consensus classification of human leukocyte antigen class II proteins

Author keywords

Clustering; HLA class II; Machine learning; MHC; Peptide binding; T cell epitopes

Indexed keywords

EPITOPE; HLA ANTIGEN CLASS 2; HLA DQ ANTIGEN; HLA DR ANTIGEN;

EID: 84872325126     PISSN: 00937711     EISSN: 14321211     Source Type: Journal    
DOI: 10.1007/s00251-012-0665-6     Document Type: Article
Times cited : (14)

References (27)
  • 2
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • 10.1023/A:1010933404324
    • Breiman L (2001) Random forests. Mach Learn 45:5-32
    • (2001) Mach Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 4
    • 84926662675 scopus 로고
    • Nearest neighbor pattern classification
    • 10.1109/TIT.1967.1053964
    • Cover T, Hart P (1967) Nearest neighbor pattern classification. IEEE Trans Inf Theory 13(1):21-27
    • (1967) IEEE Trans Inf Theory , vol.13 , Issue.1 , pp. 21-27
    • Cover, T.1    Hart, P.2
  • 6
    • 0344360732 scopus 로고    scopus 로고
    • Towards the in silico identification of class II restricted T-cell epitopes: A partial least squares iterative self-consistent algorithm for affinity prediction
    • 14630655 10.1093/bioinformatics/btg312 1:CAS:528:DC%2BD3sXpvVSjurg%3D
    • Doytchinova IA, Flower DR (2003) Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction. Bioinformatics 19:2263-2270
    • (2003) Bioinformatics , vol.19 , pp. 2263-2270
    • Doytchinova, I.A.1    Flower, D.R.2
  • 7
    • 18944395866 scopus 로고    scopus 로고
    • In silico identification of supertypes for class II MHCs
    • 15905552 1:CAS:528:DC%2BD2MXkt1Omtbc%3D
    • Doytchinova IA, Flower DR (2005) In silico identification of supertypes for class II MHCs. J Immunol 174(11):7085-7095
    • (2005) J Immunol , vol.174 , Issue.11 , pp. 7085-7095
    • Doytchinova, I.A.1    Flower, D.R.2
  • 9
    • 38649118833 scopus 로고    scopus 로고
    • In silico tools for predicting peptides binding to HLA-class II molecules: More confusion than conclusion
    • 18034454 10.1021/pr070527b 1:CAS:528:DC%2BD2sXhtlCqtLnL
    • Gowthaman U, Agrewala JN (2008) In silico tools for predicting peptides binding to HLA-class II molecules: more confusion than conclusion. J Proteome Res 7(1):154-163
    • (2008) J Proteome Res , vol.7 , Issue.1 , pp. 154-163
    • Gowthaman, U.1    Agrewala, J.N.2
  • 10
    • 79958184746 scopus 로고    scopus 로고
    • Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes
    • 21305276 10.1007/s00251-011-0513-0 1:CAS:528:DC%2BC3MXlvFOqurw%3D
    • Greenbaum J, Sidney J, Chung J, Brander C, Peters B, Sette A (2011) Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes. Immunogenetics 63(6):325-335
    • (2011) Immunogenetics , vol.63 , Issue.6 , pp. 325-335
    • Greenbaum, J.1    Sidney, J.2    Chung, J.3    Brander, C.4    Peters, B.5    Sette, A.6
  • 11
    • 0001368373 scopus 로고
    • Etude comparative de la distribution florale dans une portion des Alpes et du Jura Bulletin de la Société vaudoise des
    • Jaccard P (1901) Etude comparative de la distribution florale dans une portion des Alpes et du Jura Bulletin de la Société vaudoise des. Sciences Naturelles 37:547-579
    • (1901) Sciences Naturelles , vol.37 , pp. 547-579
    • Jaccard, P.1
  • 12
    • 24144463821 scopus 로고    scopus 로고
    • Prediction of MHC class II binders using the ant colony search strategy
    • 16061368 10.1016/j.artmed.2005.02.002
    • Karpenko O, Shi J, Dai Y (2005) Prediction of MHC class II binders using the ant colony search strategy. Artif Intell Med 35:147-156
    • (2005) Artif Intell Med , vol.35 , pp. 147-156
    • Karpenko, O.1    Shi, J.2    Dai, Y.3
  • 15
    • 0000234257 scopus 로고
    • The evidence framework applied to classification networks
    • 10.1162/neco.1992.4.5.720
    • MacKay DJC (1992) The evidence framework applied to classification networks. Neural Computation 4:720-736
    • (1992) Neural Computation , vol.4 , pp. 720-736
    • MacKay, D.J.C.1
  • 16
    • 61349097815 scopus 로고    scopus 로고
    • Class II HLA-peptide binding prediction using structural principles
    • 19187794 10.1016/j.humimm.2008.12.012 1:CAS:528:DC%2BD1MXivVWhs78%3D
    • Mohanapriya A, Lulu S, Kayathri R, Kangueane P (2009) Class II HLA-peptide binding prediction using structural principles. Hum Immunol 70(3):159-169
    • (2009) Hum Immunol , vol.70 , Issue.3 , pp. 159-169
    • Mohanapriya, A.1    Lulu, S.2    Kayathri, R.3    Kangueane, P.4
  • 17
    • 79960230944 scopus 로고    scopus 로고
    • Peptide binding prediction for the human class II MHC allele HLA-DP2: A molecular docking approach
    • 10.1186/1472-6807-11-32 1:CAS:528:DC%2BC3MXhtVCgurvI
    • Patronov A, Dimitrov I, Flower DR, Doytchinova I (2011) Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach. BMC Struc Biol 11:32
    • (2011) BMC Struc Biol , vol.11 , pp. 32
    • Patronov, A.1    Dimitrov, I.2    Flower, D.R.3    Doytchinova, I.4
  • 18
    • 84864743678 scopus 로고    scopus 로고
    • AMS 4.0: Consensus prediction of post-translational modifications in protein sequences
    • doi: 10.1007/s00726-012-1290-2
    • Plewczynski D, Basu S, Saha I (2012) AMS 4.0: consensus prediction of post-translational modifications in protein sequences. Amino Acid. doi: 10.1007/s00726-012-1290-2
    • (2012) Amino Acid
    • Plewczynski, D.1    Basu, S.2    Saha, I.3
  • 19
    • 84864764051 scopus 로고    scopus 로고
    • Fuzzy clustering of physicochemical and biochemical properties of amino acids
    • 10.1007/s00726-011-1106-9
    • Saha I, Maulik U, Bandyopadhyay S, Plewczynski D (2011) Fuzzy clustering of physicochemical and biochemical properties of amino acids. Amino Acid 43(2):583-594
    • (2011) Amino Acid , vol.43 , Issue.2 , pp. 583-594
    • Saha, I.1    Maulik, U.2    Bandyopadhyay, S.3    Plewczynski, D.4
  • 20
    • 0033388724 scopus 로고    scopus 로고
    • Nine major HLA class i supertypes account for the vast preponderance of HLA-A and -B polymorphism
    • 10602880 10.1007/s002510050594 1:CAS:528:DyaK1MXntlalsbo%3D
    • Sette A, Sidney J (1999) Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 50:201-212
    • (1999) Immunogenetics , vol.50 , pp. 201-212
    • Sette, A.1    Sidney, J.2
  • 21
    • 40549122506 scopus 로고    scopus 로고
    • Assessing the uncertainty of the cluster analysis using the bootstrap resampling
    • Shimodaira H (2002) Assessing the uncertainty of the cluster analysis using the bootstrap resampling. Proc Inst Statist Math 80:33-44
    • (2002) Proc Inst Statist Math , vol.80 , pp. 33-44
    • Shimodaira, H.1
  • 22
    • 21644440363 scopus 로고    scopus 로고
    • Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling
    • 10.1214/009053604000000823
    • Shimodaira H (2005) Approximately unbiased tests of regions using multistep-multiscale bootstrap resampling. Ann Stat 32(6):2616-2641
    • (2005) Ann Stat , vol.32 , Issue.6 , pp. 2616-2641
    • Shimodaira, H.1
  • 24
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: An R package for assessing the uncertainty in hierarchical clustering
    • 16595560 10.1093/bioinformatics/btl117 1:CAS:528:DC%2BD28XmsVensLg%3D
    • Suzuki R, Shimodaira H (2006) Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22(12):1540-1542
    • (2006) Bioinformatics , vol.22 , Issue.12 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2
  • 27
    • 59949104315 scopus 로고    scopus 로고
    • Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: A molecular dynamics simulation study
    • 18767126 10.1002/bip.21078 1:CAS:528:DC%2BD1cXhsVKitbnI
    • Yaneva R, Springer S, Zacharias M (2009) Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: a molecular dynamics simulation study. Biopolymers 91(1):14-27
    • (2009) Biopolymers , vol.91 , Issue.1 , pp. 14-27
    • Yaneva, R.1    Springer, S.2    Zacharias, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.