-
1
-
-
67349209853
-
Next-generation DNA sequencing techniques
-
Ansorge, W. J. (2009) Next-generation DNA sequencing techniques. N. Biotechnol. 25, 195-203
-
(2009)
N. Biotechnol.
, vol.25
, pp. 195-203
-
-
Ansorge, W.J.1
-
2
-
-
77951121533
-
De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX titanium platform to discover putative genes involved in ginsenoside biosynthesis
-
Sun, C., Li, Y., Wu, Q., Luo, H., Sun, Y., Song, J., Lui, E. M., and Chen, S. (2010) De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 11, 262
-
(2010)
BMC Genomics
, vol.11
, pp. 262
-
-
Sun, C.1
Li, Y.2
Wu, Q.3
Luo, H.4
Sun, Y.5
Song, J.6
Lui, E.M.7
Chen, S.8
-
3
-
-
80051546221
-
454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng
-
Chen, S., Luo, H., Li, Y., Sun, Y., Wu, Q., Niu, Y., Song, J., Lv, A., Zhu, Y., Sun, C., Steinmetz, A., and Qian, Z. (2011) 454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng. Plant Cell Rep. 30, 1593-1601
-
(2011)
Plant Cell Rep.
, vol.30
, pp. 1593-1601
-
-
Chen, S.1
Luo, H.2
Li, Y.3
Sun, Y.4
Wu, Q.5
Niu, Y.6
Song, J.7
Lv, A.8
Zhu, Y.9
Sun, C.10
Steinmetz, A.11
Qian, Z.12
-
4
-
-
80053958253
-
Transcriptome profiling and in silico analysis of Gynostemma pentaphyllum using a next generation sequencer
-
Subramaniyam, S., Mathiyalagan, R., Jun Gyo, I., Bum-Soo, L., and Sungyoung, L., and Deok Chun, Y. (2011) Transcriptome profiling and in silico analysis of Gynostemma pentaphyllum using a next generation sequencer. Plant Cell Rep. 30, 2075-2083
-
(2011)
Plant Cell Rep.
, vol.30
, pp. 2075-2083
-
-
Subramaniyam, S.1
Mathiyalagan, R.2
Jun Gyo, I.3
Bum-Soo, L.4
Sungyoung, L.5
Deok Chun, Y.6
-
5
-
-
79960891485
-
Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids
-
Hsiao, Y.-Y., Chen, Y.-W., Huang, S.-C., Pan, Z.-J., Fu, C.-H., Chen, W.-H., Tsai, W.-C., and Chen, H.-H. (2011) Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids. BMC Genomics 12, 360
-
(2011)
BMC Genomics
, vol.12
, pp. 360
-
-
Hsiao, Y.-Y.1
Chen, Y.-W.2
Huang, S.-C.3
Pan, Z.-J.4
Fu, C.-H.5
Chen, W.-H.6
Tsai, W.-C.7
Chen, H.-H.8
-
6
-
-
80052906944
-
De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome
-
Su, C.-L., Chao, Y.-T., Alex Chang, Y.-C., Chen, W.-C., Chen, C.-Y., Lee, A.-Y., Hwa, K. T., and Shih, M.-C. (2011) De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome. Plant Cell Physiol. 52, 1501-1514
-
(2011)
Plant Cell Physiol.
, vol.52
, pp. 1501-1514
-
-
Su, C.-L.1
Chao, Y.-T.2
Alex Chang, Y.-C.3
Chen, W.-C.4
Chen, C.-Y.5
Lee, A.-Y.6
Hwa, K.T.7
Shih, M.-C.8
-
7
-
-
79952045110
-
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
-
Shi, C.-Y., Yang, H., Wei, C.-L., Yu, O., Zhang, Z.-Z., Jiang, C.-J., Sun, J., Li, Y.-Y., Chen, Q., Xia, T., and Wan, X.-C. (2011) Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics 12, 131
-
(2011)
BMC Genomics
, vol.12
, pp. 131
-
-
Shi, C.-Y.1
Yang, H.2
Wei, C.-L.3
Yu, O.4
Zhang, Z.-Z.5
Jiang, C.-J.6
Sun, J.7
Li, Y.-Y.8
Chen, Q.9
Xia, T.10
Wan, X.-C.11
-
8
-
-
79955772476
-
Astereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus
-
Giddings, L.-A., Liscombe, D. K., Hamilton, J. P., Childs, K. L., DellaPenna, D., Buell, C. R., and O'Connor, S. E. (2011)Astereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus. J. Biol. Chem. 286, 16751-16757
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 16751-16757
-
-
Giddings, L.-A.1
Liscombe, D.K.2
Hamilton, J.P.3
Childs, K.L.4
DellaPenna, D.5
Buell, C.R.6
O'Connor, S.E.7
-
9
-
-
78349297591
-
Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
-
Desgagné-Penix, I., Khan, M. F., Schriemer, D. C., Cram, D., Nowak, J., and Facchini, P. J. (2010) Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures. BMC Plant Biol. 10, 252
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 252
-
-
Desgagné-Penix, I.1
Khan, M.F.2
Schriemer, D.C.3
Cram, D.4
Nowak, J.5
Facchini, P.J.6
-
10
-
-
79959841120
-
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
-
Wong, M. M., Cannon, C. H., and Wickneswari, R. (2011) Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. BMC Genomics 12, 342
-
(2011)
BMC Genomics
, vol.12
, pp. 342
-
-
Wong, M.M.1
Cannon, C.H.2
Wickneswari, R.3
-
11
-
-
80052500402
-
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
-
Hiremath, P. J., Farmer, A., Cannon, S. B., Woodward, J., Kudapa, H., Tuteja, R., Kumar, A., Bhanuprakash, A., Mulaosmanovic, B., Gujaria, N., Krishnamurthy, L., Gaur, P. M., Kavikishor, P. B., Shah, T., Srinivasan, R., Lohse, M., Xiao, Y., Town, C. D., Cook, D. R., May, G. D., and Varshney, R. K. (2011) Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol. J. 9, 922-931
-
(2011)
Plant Biotechnol. J.
, vol.9
, pp. 922-931
-
-
Hiremath, P.J.1
Farmer, A.2
Cannon, S.B.3
Woodward, J.4
Kudapa, H.5
Tuteja, R.6
Kumar, A.7
Bhanuprakash, A.8
Mulaosmanovic, B.9
Gujaria, N.10
Krishnamurthy, L.11
Gaur, P.M.12
Kavikishor, P.B.13
Shah, T.14
Srinivasan, R.15
Lohse, M.16
Xiao, Y.17
Town, C.D.18
Cook, D.R.19
May, G.D.20
Varshney, R.K.21
more..
-
12
-
-
84859487055
-
Bifunctional cis-abienol synthase from Abies balsamea discovered by transcriptome sequencing and its implications for diterpenoid fragrance production
-
Zerbe, P., Chiang, A., Yuen, M., Hamberger, B., Hamberger, B., Draper, J. A., Britton, R., and Bohlmann, J. (2012) Bifunctional cis-abienol synthase from Abies balsamea discovered by transcriptome sequencing and its implications for diterpenoid fragrance production. J. Biol. Chem. 287, 12121-12131
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 12121-12131
-
-
Zerbe, P.1
Chiang, A.2
Yuen, M.3
Hamberger, B.4
Hamberger, B.5
Draper, J.A.6
Britton, R.7
Bohlmann, J.8
-
13
-
-
0034185943
-
Podophyllotoxin
-
Canel, C., Moraes, R. M., Dayan, F. E., and Ferreira, D. (2000) Podophyllotoxin. Phytochemistry 54, 115-120
-
(2000)
Phytochemistry
, vol.54
, pp. 115-120
-
-
Canel, C.1
Moraes, R.M.2
Dayan, F.E.3
Ferreira, D.4
-
14
-
-
0033990519
-
Propagation and conservation of Podophyllum hexandrum Royle. An important medicinal herb
-
Nadeem, M., Palni, L. M. S., Purohit, A. N., Pandey, H., and Nandi, S. K. (2000) Propagation and conservation of Podophyllum hexandrum Royle. An important medicinal herb. Biol. Conserv. 92, 121-129
-
(2000)
Biol. Conserv.
, vol.92
, pp. 121-129
-
-
Nadeem, M.1
Palni, L.M.S.2
Purohit, A.N.3
Pandey, H.4
Nandi, S.K.5
-
15
-
-
4043121827
-
Podophyllotoxin: Distribution, sources, applications and new cytotoxic derivatives
-
DOI 10.1016/j.toxicon.2004.05.008, PII S0041010104001953
-
Gordaliza, M., García, P. A., del Corral, J. M., Castro, M. A., and Gómez-Zurita, M. A. (2004) Podophyllotoxin. Distribution, sources, applications and new cytotoxic derivatives. Toxicon 44, 441-459 (Pubitemid 39070644)
-
(2004)
Toxicon
, vol.44
, Issue.4
, pp. 441-459
-
-
Gordaliza, M.1
Garcia, P.A.2
Miguel, D.C.J.M.3
Castro, M.A.4
Gomez-Zurita, M.A.5
-
16
-
-
34147173768
-
A new and efficient strategy for the synthesis of podophyllotoxin and its analogues
-
Wu, Y., Zhang, H., Zhao, Y., Zhao, J., Chen, J., and Li, L. (2007) A new and efficient strategy for the synthesis of podophyllotoxin and its analogues. Org. Lett. 9, 1199-1202
-
(2007)
Org. Lett.
, vol.9
, pp. 1199-1202
-
-
Wu, Y.1
Zhang, H.2
Zhao, Y.3
Zhao, J.4
Chen, J.5
Li, L.6
-
17
-
-
0141888982
-
The intramolecular carboxyarylation approach to podophyllotoxin
-
DOI 10.1021/ja0376588
-
Reynolds, A. J., Scott, A. J., Turner, C. I., and Sherburn, M. S. (2003) The intramolecular carboxyarylation approach to podophyllotoxin. J. Am. Chem. Soc. 125, 12108-12109 (Pubitemid 37238841)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.40
, pp. 12108-12109
-
-
Reynolds, A.J.1
Scott, A.J.2
Turner, C.I.3
Sherburn, M.S.4
-
18
-
-
0034736129
-
Dirigent-mediated podophyllotoxin biosynthesis in Linum flavum and Podophyllum peltatum
-
Xia, Z.-Q., Costa, M. A., Proctor, J., Davin, L. B., and Lewis, N. G. (2000) Dirigent-mediated podophyllotoxin biosynthesis in Linum flavum and Podophyllum peltatum. Phytochemistry 55, 537-549
-
(2000)
Phytochemistry
, vol.55
, pp. 537-549
-
-
Xia, Z.-Q.1
Costa, M.A.2
Proctor, J.3
Davin, L.B.4
Lewis, N.G.5
-
19
-
-
0031031957
-
Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center
-
DOI 10.1126/science.275.5298.362
-
Davin, L. B., Wang, H.-B., Crowell, A. L., Bedgar, D. L., Martin, D. M., Sarkanen, S., and Lewis, N. G. (1997) Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center. Science 275, 362-366 (Pubitemid 27051607)
-
(1997)
Science
, vol.275
, Issue.5298
, pp. 362-366
-
-
Davin, L.B.1
Wang, H.-B.2
Crowell, A.L.3
Bedgar, D.L.4
Martin, D.M.5
Sarkanen, S.6
Lewis, N.G.7
-
20
-
-
0034130986
-
Dirigent proteins and dirigent sites explain the mystery of specificity of radical precursor coupling in lignan and lignin biosynthesis
-
Davin, L. B., and Lewis, N. G. (2000) Dirigent proteins and dirigent sites explain the mystery of specificity of radical precursor coupling in lignan and lignin biosynthesis. Plant Physiol. 123, 453-462
-
(2000)
Plant Physiol.
, vol.123
, pp. 453-462
-
-
Davin, L.B.1
Lewis, N.G.2
-
21
-
-
0000842931
-
Matairesinol as precursor of Podophyllum lignans
-
Broomhead, A. J., Rahman, M. M. A., Dewick, P. M., Jackson, D. E., and Lucas, J. A. (1991) Matairesinol as precursor of Podophyllum lignans. Phytochemistry 30, 1489-1492
-
(1991)
Phytochemistry
, vol.30
, pp. 1489-1492
-
-
Broomhead, A.J.1
Rahman, M.M.A.2
Dewick, P.M.3
Jackson, D.E.4
Lucas, J.A.5
-
22
-
-
0035918142
-
Secoisolariciresinol dehydrogenase purification, cloning, and functional expression. Implications for human health protection
-
Xia, Z.-Q., Costa, M. A., Pelissier, H. C., Davin, L. B., and Lewis, N. G. (2001) Secoisolariciresinol dehydrogenase purification, cloning, and functional expression. Implications for human health protection. J. Biol. Chem. 276, 12614-12623
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 12614-12623
-
-
Xia, Z.-Q.1
Costa, M.A.2
Pelissier, H.C.3
Davin, L.B.4
Lewis, N.G.5
-
23
-
-
34247498269
-
Aryltetralin-lignan formation in two different cell suspension cultures of Linum album: Deoxypodophyllotoxin 6-hydroxylase, a key enzyme for the formation of 6-methoxypodophyllotoxin
-
DOI 10.1016/j.phytochem.2007.02.031, PII S0031942207001331
-
Federolf, K., Alfermann, A. W., and Fuss, E. (2007) Aryltetralin-lignan formation in two different cell suspension cultures of Linum album. Deoxypodophyllotoxin 6-hydroxylase, a key enzyme for the formation of 6-methoxypodophyllotoxin. Phytochemistry 68, 1397-1406 (Pubitemid 46659730)
-
(2007)
Phytochemistry
, vol.68
, Issue.10
, pp. 1397-1406
-
-
Federolf, K.1
Alfermann, A.W.2
Fuss, E.3
-
24
-
-
0141571275
-
β-peltatin 6-O-methyltransferase from suspension cultures of Linum nodiflorum
-
DOI 10.1016/S0031-9422(03)00196-1
-
Kranz, K., and Petersen, M. (2003) β-Peltatin 6-O-methyltransferase from suspension cultures of Linum nodiflorum. Phytochemistry 64, 453-458 (Pubitemid 37168963)
-
(2003)
Phytochemistry
, vol.64
, Issue.2
, pp. 453-458
-
-
Kranz, K.1
Petersen, M.2
-
25
-
-
0141465299
-
Deoxypodophyllotoxin 6-hydroxylase, a cytochrome P450 monooxygenase from cell cultures of Linum flavum involved in the biosynthesis of cytotoxic lignans
-
Molog, G. A., Empt, U., Kuhlmann, S., van Uden, W., Pras, N., Alfermann, A. W., and Petersen, M. (2001) Deoxypodophyllotoxin 6-hydroxylase, a cytochrome P450 monooxygenase from cell cultures of Linum flavum involved in the biosynthesis of cytotoxic lignans. Planta 214, 288-294 (Pubitemid 36059281)
-
(2001)
Planta
, vol.214
, Issue.2
, pp. 288-294
-
-
Molog, G.A.1
Empt, U.2
Kuhlmann, S.3
Van Uden, W.4
Pras, N.5
Alfermann, A.W.6
Petersen, M.7
-
26
-
-
0028852795
-
The production of podophyllotoxin and its 5-methoxy derivative through bioconversion of cyclodextrin-complexed desoxypodophyllotoxin by plant cell cultures
-
van Uden, W., Bouma, A. S., Bracht Waker, J. F., Middel, O., Wichers, H. J., de Waard, P., Woerdenbag, H. J., Kellogg, R. M., and Pras, N. (1995) The production of podophyllotoxin and its 5-methoxy derivative through bioconversion of cyclodextrin-complexed desoxypodophyllotoxin by plant cell cultures. Plant Cell Tissue Organ Cult. 42, 73-79
-
(1995)
Plant Cell Tissue Organ Cult.
, vol.42
, pp. 73-79
-
-
Van Uden, W.1
Bouma, A.S.2
Bracht Waker, J.F.3
Middel, O.4
Wichers, H.J.5
De Waard, P.6
Woerdenbag, H.J.7
Kellogg, R.M.8
Pras, N.9
-
27
-
-
0347926550
-
Biosynthesis of podophyllotoxin in Linum album cell cultures
-
DOI 10.1007/s00425-002-0834-1
-
Seidel, V., Windhövel, J., Eaton, G., Alfermann, A. W., Arroo, R. R., Medarde, M., Petersen, M., and Woolley, J. G. (2002) Biosynthesis of podophyllotoxin in Linum album cell cultures. Planta 215, 1031-1039 (Pubitemid 36080262)
-
(2002)
Planta
, vol.215
, Issue.6
, pp. 1031-1039
-
-
Seidel, V.1
Windhovel, J.2
Eaton, G.3
Alfermann, A.W.4
Arroo, R.R.J.5
Medarde, M.6
Petersen, M.7
Woolley, J.G.8
-
28
-
-
0025830371
-
Formation of lignans (-)-secoisolariciresinol and (-)-matairesinol with forsythia intermedia cell-free extracts
-
Umezawa, T., Davin, L. B., and Lewis, N. G. (1991) Formation of lignans (-)-secoisolariciresinol and (-)-matairesinol with Forsythia intermedia cell-free extracts. J. Biol. Chem. 266, 10210-10217 (Pubitemid 21906789)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.16
, pp. 10210-10217
-
-
Umezawa, T.1
Davin, L.B.2
Lewis, N.G.3
-
29
-
-
0001608844
-
Formation of (-)-arctigenin in Forsythia intermedia
-
Ozawa, S., Davin, L. B., and Lewis, N. G. (1993) Formation of (-)-arctigenin in Forsythia intermedia. Phytochemistry 32, 643-652
-
(1993)
Phytochemistry
, vol.32
, pp. 643-652
-
-
Ozawa, S.1
Davin, L.B.2
Lewis, N.G.3
-
30
-
-
0032008228
-
Biosynthesis of antioxidant lignans in Sesamum indicum seeds
-
DOI 10.1016/S0031-9422(97)00727-9, PII S0031942297007279
-
Kato, M. J., Chu, A., Davin, L. B., and Lewis, N. G. (1998) Biosynthesis of antioxidant lignans in Sesamum indicum seeds. Phytochemistry 47, 583-591 (Pubitemid 28051422)
-
(1998)
Phytochemistry
, vol.47
, Issue.4
, pp. 583-591
-
-
Kato, M.J.1
Chu, A.2
Davin, L.B.3
Lewis, N.G.4
-
31
-
-
33645241407
-
The RIN. An RNA integrity number for assigning integrity values to RNA measurements
-
Schroeder, A., Mueller, O., Stocker, S., Salowsky, R., Leiber, M., Gassmann, M., Lightfoot, S., Menzel, W., Granzow, M., and Ragg, T. (2006) The RIN. An RNA integrity number for assigning integrity values to RNA measurements. BMC Mol. Biol. 7, 3
-
(2006)
BMC Mol. Biol.
, vol.7
, pp. 3
-
-
Schroeder, A.1
Mueller, O.2
Stocker, S.3
Salowsky, R.4
Leiber, M.5
Gassmann, M.6
Lightfoot, S.7
Menzel, W.8
Granzow, M.9
Ragg, T.10
-
32
-
-
66449136667
-
ABySS. A parallel assembler for short read sequence data
-
Simpson, J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones, S. J., and Birol, I. (2009) ABySS. A parallel assembler for short read sequence data. Genome Res. 19, 1117-1123
-
(2009)
Genome Res.
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
Wong, K.2
Jackman, S.D.3
Schein, J.E.4
Jones, S.J.5
Birol, I.6
-
33
-
-
70350664649
-
De novo transcriptome assembly with ABySS
-
Birol, I., Jackman, S. D., Nielsen, C. B., Qian, J. Q., Varhol, R., Stazyk, G., Morin, R. D., Zhao, Y., Hirst, M., Schein, J. E., Horsman, D. E., Connors, J. M., Gascoyne, R. D., Marra, M. A., and Jones, S. J. (2009) De novo transcriptome assembly with ABySS. Bioinformatics 25, 2872-2877
-
(2009)
Bioinformatics
, vol.25
, pp. 2872-2877
-
-
Birol, I.1
Jackman, S.D.2
Nielsen, C.B.3
Qian, J.Q.4
Varhol, R.5
Stazyk, G.6
Morin, R.D.7
Zhao, Y.8
Hirst, M.9
Schein, J.E.10
Horsman, D.E.11
Connors, J.M.12
Gascoyne, R.D.13
Marra, M.A.14
Jones, S.J.15
-
34
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R., Zhu, H., Ruan, J., Qian, W., Fang, X., Shi, Z., Li, Y., Li, S., Shan, G., Kristiansen, K., Li, S., Yang, H., Wang, J., and Wang, J. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272
-
(2010)
Genome Res.
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Li, S.11
Yang, H.12
Wang, J.13
Wang, J.14
-
36
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Li, W., and Godzik, A. (2006) Cd-hit. A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22, 1658-1659 (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
37
-
-
77949512406
-
Tablet. Next generation sequence assembly visualization
-
Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F., and Marshall, D. (2010) Tablet. Next generation sequence assembly visualization. Bioinformatics 26, 401-402
-
(2010)
Bioinformatics
, vol.26
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
38
-
-
0002051540
-
BioEdit. A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall, T. A. (1999) BioEdit. A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
39
-
-
70149108769
-
Whole genome amplification and de novo assembly of single bacterial cells
-
Rodrigue, S., Malmstrom, R. R., Berlin, A. M., Birren, B. W., Henn, M. R., and Chisholm, S. W. (2009) Whole genome amplification and de novo assembly of single bacterial cells. PLoS ONE 4, e6864
-
(2009)
PLoS ONE
, vol.4
-
-
Rodrigue, S.1
Malmstrom, R.R.2
Berlin, A.M.3
Birren, B.W.4
Henn, M.R.5
Chisholm, S.W.6
-
40
-
-
79956366297
-
Evaluating the fidelity of de novo short read metagenomic assembly using simulated data
-
Pignatelli, M., and Moya, A. (2011) Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PLoS ONE 6, e19984
-
(2011)
PLoS ONE
, vol.6
-
-
Pignatelli, M.1
Moya, A.2
-
41
-
-
33745628340
-
Formation of two methylenedioxy bridges by a Sesamum CYP81Q protein yielding a furofuran lignan, (+)-sesamin
-
DOI 10.1073/pnas.0603865103
-
Ono, E., Nakai, M., Fukui, Y., Tomimori, N., Fukuchi-Mizutani, M., Saito, M., Satake, H., Tanaka, T., Katsuta, M., Umezawa, T., and Tanaka, Y. (2006) Formation of two methylenedioxy bridges by a Sesamum CYP81Q protein yielding a furofuran lignan, (+)-sesamin. Proc. Natl. Acad. Sci. U.S.A. 103, 10116-10121 (Pubitemid 43993632)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.26
, pp. 10116-10121
-
-
Ono, E.1
Nakai, M.2
Fukui, Y.3
Tomimori, N.4
Fukuchi-Mizutani, M.5
Saito, M.6
Satake, H.7
Tanaka, T.8
Katsuta, M.9
Umezawa, T.10
Tanaka, Y.11
-
42
-
-
0141755310
-
Molecular cloning and characterization of CYP719, a methylenedioxy bridge-forming enzyme that belongs to a novel P450 family, from cultured Coptis japonica cells
-
DOI 10.1074/jbc.M302470200
-
Ikezawa, N., Tanaka, M., Nagayoshi, M., Shinkyo, R., Sakaki, T., Inouye, K., and Sato, F. (2003) Molecular cloning and characterization of CYP719, a methylenedioxy bridge-forming enzyme that belongs to a novel P450 family, from cultured Coptis japonica cells. J. Biol. Chem. 278, 38557-38565 (Pubitemid 37221751)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.40
, pp. 38557-38565
-
-
Ikezawa, N.1
Tanaka, M.2
Nagayoshi, M.3
Shinkyo, R.4
Sakaki, T.5
Inouye, K.6
Sato, F.7
-
43
-
-
0029776005
-
Yeast expression of animal and plant P450s in optimized redox environments
-
Pompon, D., Louerat, B., Bronine, A., and Urban, P. (1996) Yeast expression of animal and plant P450s in optimized redox environments. Methods Enzymol. 272, 51-64 (Pubitemid 26299867)
-
(1996)
Methods in Enzymology
, vol.272
, pp. 51-64
-
-
Pompon, D.1
Louerat, B.2
Bronine, A.3
Urban, P.4
-
44
-
-
76649119460
-
Nonlinear least-squares data fitting in Excel spreadsheets
-
Kemmer, G., and Keller, S. (2010) Nonlinear least-squares data fitting in Excel spreadsheets. Nat. Protoc. 5, 267-281
-
(2010)
Nat. Protoc.
, vol.5
, pp. 267-281
-
-
Kemmer, G.1
Keller, S.2
-
45
-
-
50449100139
-
The carbon monoxide-binding pigment of liver microsomes. II. Solubilization, purification, and properties
-
Omura, T., and Sato, R. (1964) The carbon monoxide-binding pigment of liver microsomes. II. Solubilization, purification, and properties. J. Biol. Chem. 239, 2379-2385
-
(1964)
J. Biol. Chem.
, vol.239
, pp. 2379-2385
-
-
Omura, T.1
Sato, R.2
-
46
-
-
84981839224
-
Lignanglucoside aus Podophyllum peltatum L. 7. Mitteilung über mitosehemmende Naturstoffe
-
von Wartburg, A., Angliker, E., and Renz, J. (1957) Lignanglucoside aus Podophyllum peltatum L. 7. Mitteilung über mitosehemmende Naturstoffe. Helv. Chim. Acta 40, 1331-1357
-
(1957)
Helv. Chim. Acta
, vol.40
, pp. 1331-1357
-
-
Von Wartburg, A.1
Angliker, E.2
Renz, J.3
-
47
-
-
0026011121
-
The chemical and biological route from podophyllotoxin glucoside to etoposide. Ninth Cain Memorial Award Lecture
-
Stähelin, H. F., and von Wartburg, A. (1991) The chemical and biological route from podophyllotoxin glucoside to etoposide. Ninth Cain Memorial Award Lecture. Cancer Res. 51, 5-15
-
(1991)
Cancer Res.
, vol.51
, pp. 5-15
-
-
Stähelin, H.F.1
Von Wartburg, A.2
-
48
-
-
0030059523
-
Analysis of aryltetrahydronaphthalene lignans and their glucoside conjugates in podophyllin resin by high-performance liquid chromatography
-
Lim, C. K. (1996) Analysis of aryltetrahydronaphthalene lignans and their glucoside conjugates in podophyllin resin by high-performance liquid chromatography. J. Chromatogr. A 722, 267-271
-
(1996)
J. Chromatogr. A
, vol.722
, pp. 267-271
-
-
Lim, C.K.1
-
49
-
-
84861705204
-
-
Bak, S., Beisson, F., Bishop, G., Hamberger, B., Höfer, R., Paquette, S., and Werck-Reichhart, D. (2011) The Arabidopsis Book, e0144
-
(2011)
The Arabidopsis Book
-
-
Bak, S.1
Beisson, F.2
Bishop, G.3
Hamberger, B.4
Höfer, R.5
Paquette, S.6
Werck-Reichhart, D.7
-
50
-
-
33845416027
-
Cytochromes P450 in phenolic metabolism
-
DOI 10.1007/s11101-006-9025-1, Exploring cytochromes P450 functions and applications
-
Ehlting, J., Hamberger, B., Million-Rousseau, R., and Werck-Reichhart, D. (2006) Cytochromes P450 in phenolic metabolism. Phytochem. Rev. 5, 239-270 (Pubitemid 44900347)
-
(2006)
Phytochemistry Reviews
, vol.5
, Issue.2-3
, pp. 239-270
-
-
Ehlting, J.1
Hamberger, B.2
Million-Rousseau, R.3
Werck-Reichhart, D.4
-
51
-
-
33845431616
-
Plant cytochrome P450s from moss to poplar
-
Nelson, D. R. (2006) Plant cytochrome P450s from moss to poplar. Phytochem. Rev. 5, 193-204
-
(2006)
Phytochem. Rev.
, vol.5
, pp. 193-204
-
-
Nelson, D.R.1
-
52
-
-
77949916538
-
The cinnamate/monolignol pathway
-
Umezawa, T. (2010) The cinnamate/monolignol pathway. Phytochem. Rev. 9, 1-17
-
(2010)
Phytochem. Rev.
, vol.9
, pp. 1-17
-
-
Umezawa, T.1
-
53
-
-
0033621061
-
New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase
-
DOI 10.1073/pnas.96.18.10045
-
Humphreys, J. M., Hemm, M. R., and Chapple, C. (1999) New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase. Proc. Natl. Acad. Sci. U.S.A. 96, 10045-10050 (Pubitemid 29422509)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.18
, pp. 10045-10050
-
-
Humphreys, J.M.1
Hemm, M.R.2
Chapple, C.3
-
54
-
-
0034979805
-
Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology
-
Winkel-Shirley, B. (2001) Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 126, 485-493
-
(2001)
Plant Physiol.
, vol.126
, pp. 485-493
-
-
Winkel-Shirley, B.1
-
55
-
-
0032575882
-
Furanofuran lignan metabolism as a function of seed maturation in Sesamum indicum. Methylenedioxy bridge formation
-
Jiao, Y., Davin, L. B., and Lewis, N. G. (1998) Furanofuran lignan metabolism as a function of seed maturation in Sesamum indicum. Methylenedioxy bridge formation. Phytochemistry 49, 387-394
-
(1998)
Phytochemistry
, vol.49
, pp. 387-394
-
-
Jiao, Y.1
Davin, L.B.2
Lewis, N.G.3
-
56
-
-
0030020915
-
Cytochrome P450-dependent methylenedioxy bridge formation in Cicer arietinum
-
Clemens, S., and Barz, W. (1996) Cytochrome P450-dependent methylenedioxy bridge formation in Cicer arietinum. Phytochemistry 41, 457-460
-
(1996)
Phytochemistry
, vol.41
, pp. 457-460
-
-
Clemens, S.1
Barz, W.2
-
57
-
-
20444379109
-
Cell type-specific localization of transcripts encoding nine consecutive enzymes involved in protoberberine alkaloid biosynthesis
-
DOI 10.1105/tpc.104.028654
-
Samanani, N., Park, S.-U., and Facchini, P. J. (2005) Cell type-specific localization of transcripts encoding nine consecutive enzymes involved in protoberberine alkaloid biosynthesis. Plant Cell 17, 915-926 (Pubitemid 43138230)
-
(2005)
Plant Cell
, vol.17
, Issue.3
, pp. 915-926
-
-
Samanani, N.1
Park, S.-U.2
Facchini, P.J.3
-
58
-
-
79951562237
-
Characterization of two methylenedioxy bridge-forming cytochrome P450-dependent enzymes of alkaloid formation in the Mexican prickly poppy Argemone mexicana
-
Díaz Chávez, M. L., Rolf, M., Gesell, A., and Kutchan, T. M. (2011) Characterization of two methylenedioxy bridge-forming cytochrome P450-dependent enzymes of alkaloid formation in the Mexican prickly poppy Argemone mexicana. Arch. Biochem. Biophys. 507, 186-193
-
(2011)
Arch. Biochem. Biophys.
, vol.507
, pp. 186-193
-
-
Díaz Chávez, M.L.1
Rolf, M.2
Gesell, A.3
Kutchan, T.M.4
-
59
-
-
33846827049
-
Molecular cloning and characterization of methylenedioxy bridge-forming enzymes involved in stylopine biosynthesis in Eschscholzia californica
-
DOI 10.1111/j.1742-4658.2007.05652.x
-
Ikezawa, N., Iwasa, K., and Sato, F. (2007) Molecular cloning and characterization of methylenedioxy bridge-forming enzymes involved in stylopine biosynthesis in Eschscholzia californica. FEBS J. 274, 1019-1035 (Pubitemid 46204421)
-
(2007)
FEBS Journal
, vol.274
, Issue.4
, pp. 1019-1035
-
-
Ikezawa, N.1
Iwasa, K.2
Sato, F.3
-
60
-
-
0016800090
-
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
-
Sanger, F., and Coulson, A. R. (1975) A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J. Mol. Biol. 94, 441-448
-
(1975)
J. Mol. Biol.
, vol.94
, pp. 441-448
-
-
Sanger, F.1
Coulson, A.R.2
-
61
-
-
33748780347
-
A combined HPLC-UV and HPLC-MS method for the identification of lignans and its application to the lignans of Linum usitatissimum L. and L. bienne Mill
-
DOI 10.1002/pca.918
-
Schmidt, T. J., Hemmati, S., Fuss, E., and Alfermann, A. W. (2006) A combined HPLC-UV and HPLC-MS method for the identification of lignans and its application to the lignans of Linum usitatissimum L. and L. bienne Mill. Phytochem. Anal. 17, 299-311 (Pubitemid 44404613)
-
(2006)
Phytochemical Analysis
, vol.17
, Issue.5
, pp. 299-311
-
-
Schmidt, T.J.1
Hemmati, S.2
Fuss, E.3
Alfermann, A.W.4
-
62
-
-
58149339932
-
High-performance liquid chromatography/mass spectrometric identification of dibenzylbutyrolactone-type lignans. Insights into electrospray ionization tandem mass spectrometric fragmentation of lign-7-eno-9,9′-lactones and application to the lignans of Linum usitatissimum L. (common flax)
-
Schmidt, T. J., Alfermann, A. W., and Fuss, E. (2008) High-performance liquid chromatography/mass spectrometric identification of dibenzylbutyrolactone-type lignans. Insights into electrospray ionization tandem mass spectrometric fragmentation of lign-7-eno-9,9′-lactones and application to the lignans of Linum usitatissimum L. (common flax). Rapid Commun. Mass Spectrom. 22, 3642-3650
-
(2008)
Rapid Commun. Mass Spectrom.
, vol.22
, pp. 3642-3650
-
-
Schmidt, T.J.1
Alfermann, A.W.2
Fuss, E.3
-
63
-
-
0001665733
-
Lignans of Chamaecyparis obtusa
-
Takaku, N., Choi, D.-H., Mikame, K., Okunishi, T., Suzuki, S., Ohashi, H., Umezawa, T., and Shimada, M. (2001) Lignans of Chamaecyparis obtusa. J. Wood Sci. 47, 476-482
-
(2001)
J. Wood Sci.
, vol.47
, pp. 476-482
-
-
Takaku, N.1
Choi, D.-H.2
Mikame, K.3
Okunishi, T.4
Suzuki, S.5
Ohashi, H.6
Umezawa, T.7
Shimada, M.8
-
64
-
-
79953234390
-
A P450-centric view of plant evolution
-
Nelson, D., and Werck-Reichhart, D. (2011) A P450-centric view of plant evolution. Plant J. 66, 194-211
-
(2011)
Plant J.
, vol.66
, pp. 194-211
-
-
Nelson, D.1
Werck-Reichhart, D.2
-
65
-
-
38349168485
-
Phylogenetic and biogeographic diversification of Berberidaceae in the northern hemisphere
-
Wang, W., Chen, Z.-D., Liu, Y., Li, R.-Q., and Li, J.-H. (2007) Phylogenetic and biogeographic diversification of Berberidaceae in the northern hemisphere. Syst. Bot. 32, 731-742
-
(2007)
Syst. Bot.
, vol.32
, pp. 731-742
-
-
Wang, W.1
Chen, Z.-D.2
Liu, Y.3
Li, R.-Q.4
Li, J.-H.5
-
66
-
-
0026094669
-
A new podophyllotoxin-type lignan from Dysosma versipellis var. tomentosa
-
Yu, P.-Z., Wang, L.-P., and Chen, Z.-N. (1991) A new podophyllotoxin-type lignan from Dysosma versipellis var. tomentosa. J. Nat. Prod. 54, 1422-1424
-
(1991)
J. Nat. Prod.
, vol.54
, pp. 1422-1424
-
-
Yu, P.-Z.1
Wang, L.-P.2
Chen, Z.-N.3
-
67
-
-
33947386540
-
Lignans from Dysosma versipellis with inhibitory effects on prostate cancer cell lines
-
DOI 10.1021/np060430o
-
Jiang, R.-W., Zhou, J.-R., Hon, P.-M., Li, S.-L., Zhou, Y., Li, L.-L., Ye, W.-C., Xu, H.-X., Shaw, P.-C., and But, P. P. (2007) Lignans from Dysosma versipellis with inhibitory effects on prostate cancer cell lines. J. Nat. Prod. 70, 283-286 (Pubitemid 46447644)
-
(2007)
Journal of Natural Products
, vol.70
, Issue.2
, pp. 283-286
-
-
Jiang, R.-W.1
Zhou, J.-R.2
Hon, P.-M.3
Li, S.-L.4
Zhou, Y.5
Li, L.-L.6
Ye, W.-C.7
Xu, H.-X.8
Shaw, P.-C.9
But, P.P.-H.10
-
68
-
-
0000756788
-
Tumour-inhibitory aryltetralin lignans in Podophyllum versipelle, Diphylleia cymosa, and Diphylleia grayi
-
Broomhead, A. J., and Dewick, P. M. (1990) Tumour-inhibitory aryltetralin lignans in Podophyllum versipelle, Diphylleia cymosa, and Diphylleia grayi. Phytochemistry 29, 3831-3837
-
(1990)
Phytochemistry
, vol.29
, pp. 3831-3837
-
-
Broomhead, A.J.1
Dewick, P.M.2
-
69
-
-
20444396193
-
Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms
-
DOI 10.1016/j.phytochem.2005.04.029, PII S003194220500186X
-
Liscombe, D. K., Macleod, B. P., Loukanina, N., Nandi, O. I., and Facchini, P. J. (2005) Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms. Phytochemistry 66, 1374-1393 (Pubitemid 40793889)
-
(2005)
Phytochemistry
, vol.66
, Issue.11 SPEC. ISS.
, pp. 1374-1393
-
-
Liscombe, D.K.1
MacLeod, B.P.2
Loukanina, N.3
Nandi, O.I.4
Facchini, P.J.5
|