Guava biotechnologies, genomic achievements and future needs

Acta Horticulturae

Volumn 959, Issue , 2012, Pages 131-140

  Ritter, E ^a  

^a NEIKER and a Vaccine producing Commercial Company CZVSL   (Spain)

Author keywords

AFLP; Association mapping; EST sequencing; Linkage maps; Myrtaceae; Psidium guajava; QTL; RAD markers; SSR

Indexed keywords

EUCALYPTUS; EUCALYPTUS GRANDIS; MYRTACEAE; PSIDIUM; PSIDIUM GUAJAVA;

EID: 84872070730     PISSN: 05677572     EISSN: None     Source Type: Book Series    
DOI: 10.17660/ActaHortic.2012.959.16     Document Type: Article

References (30)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Cheung, F., Haas, B.J., Goldberg, S.MD., May, G.D., Xiao, Y. and Town, C.D. 2006. Sequencing Medicago truncatula expressed sequenced tags using 454 life sciences technology. BMC Genomics 7:272.
3. Chutimanitsakun, Y., Nipper, R.W., Cuesta-Marcos, A., Cistué, L., Corey, A., Filichkina, T., Johnson, E.A. and Hayes, P.M. 2011. Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics 12:4.
4. Kilian, B. and Graner, A. 2012. NGS technologies for analyzing germplasm diversity in genebanks. Brief. Funct. Genomics 11:38-50.
5. Knapp, S.J. and Bridges, W.C. 1990. Programs for mapping quantitative trait loci using flanking molecular markers and nonlinear models. J. Heredity 81:234-235.
6. Knapp, S.J., Bridges, W.C. and Birkes, D. 1990. Mapping quantitative trait loci using molecular marker maps. Theor. Appl. Genet. 79:583-592.
7. Landrum, L.R., Clark, W.D., Sharp, W.P. and Brendecke, J. 1995. Hybridization between Psidium guajava and P. guineense (Myrtaceae). Economic Botany 49:153-161.
8. Lozoya, X. 1999. Xiuhpatli, Herba officinalis. SSA/UNAM, Mexico, p.127.
9. Lozoya, X., Meckes, M., Aboud-Zaid, M., Tortoriello, J., Nozolillo, C. and Arnason, J.T. 1994. Quercetine glycosides in Psidium guajava L. leaves and determination of a spasmolytic principle. Archives of Medical Research 25:11-15.
10. Lutterodt, G.D. 1992. Inhibition of Microlax-induced experimental diarrhea with narcotic-like extracts of Psidium guajava leaf in rats. Journal of Ethnopharmacology 37:151-157.
11. Muchero, W., Ehlers, J.D., Close, T.J. and Roberts, P.A. 2011. Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity in cowpea [Vigna unguiculata (L) Walp.]. BMC Genomics 12:8.
12. Myburg, A., Grattapaglia, D., Tuskan, G., Jenkins, J., Schmutz, J., Mizrachi, E., Hefer, C., Pappas, G., Sterck, L., Van De Peer, Y., Hayes, R. and Rokhsar, D. 2011. The Eucalyptus grandis Genome Project: genome and transcriptome resources for comparative analysis of woody plant biology. BMC Proceedings 5 (Suppl. 7):I20, doi:10.1186/1753-6561-5-S7-I20.
13. Nakasone, H.Y. and Paull, R.E. 1998. Tropical Fruits. CAB International, Wallingford, UK.
14. Peters, S.A., Bargsten, J.W., Szinay, D., van de Belt, J., Visser, R.G., Bai, Y. and de Jong, H. 2012. Structural homology in Solanaceae: analysis of genomic regions in support of synteny studies in tomato, potato and pepper. Plant J. doi: 10.1111/j.1365-313X.2012.05012.x. [Epub ahead of print].
15. Pfender, W.F., Saha, M.C., Johnson, E.A. and Slabaugh, M.B. 2011. Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor. Appl. Genet. 122:1467-1480.
16. Risterucci, A.-M., Duval, M.F., Rohde, W. and Billotte, N. 2005. Isolation and characterization of microsatellite loci from Psidium guajava L. Mol. Ecol. Notes 5:745-748.
17. Ritter, E., Herran, A., Valdés-Infante, J., Rodríguez- Medina, N.N., Briceño, A., Fermin, G., Sanchez-Teyer, F., O'Connor-Sanchez, A., Muth, J., Boike, J., Prüfer, D., Santos, C.A., Nunes dos Santos, I.C., Rodrigues, M.A., Risterucci, A.M., Billotte, N., Becker, D. and Rohde, W. 2010a. Comparative linkage mapping in three guava mapping populations and construction of an integrated reference map in guava. Acta Hort. 849:175-182.
18. Ritter, E., Rodríguez-Medina, N.N., Velásquez, B., Rivero, D., Rodríguez, J.A., Martínez, F. and Valdés-Infante, J. 2010b. QTL (quantitative trait loci) analysis in guava. Acta Hort. 849:193-202.
19. Ritter, E., Lucca, F., Sánchez, I., Ruiz de Galarreta, J.I., Aragonés, A., Castañón, S., Bryan, G., Waugh, R., Lefebvre, V., Rousselle-Bourgoise, F., Gebhardt, C., Van Eck, H., Van Os, H., Taco, J. and Bakker, J. 2005. Genomic resources in potato and possibilities for exploitation. p.55-65. In: A.J. Haverkort and P.C. Struik (eds.), Potato in progress; science meets practice. Wageningen Academic Publishers, The Netherlands.
20. Ritter, E. and Salamini, F. 1996. The calculation of recombination frequencies in crosses of allogamous plant species with application to linkage mapping. Genet. Res. 67:55-65.
21. Rodriguez, N., Valdés-Infante, J., Becker, D., Velazquez, B., Gonzalez, G., Sourd, D., Rodriguez, J., Billotte, N., Risterucci, A.M., Ritter, E. and Rohde, W. 2007. Characterization of guava accessions by SSR markers, extension of the molecular linkage map, and mapping of QTLs for vegetative and reproductive characters. Acta Hort. 735:201-216.
22. Rodriguez, N.N., Valdés-Infante, J., Becker, D., Belázquez, B., Coto, O., Ritter, E. and Rohde, W. 2004. Morphological, agronomic and molecular characterization of Cuban accessions of guava (Psidium guajava L.). J. Genet. & Breed. 58:79-90.
23. Rowe, H.C., Renaut, S. and Guggisberg, A. 2011. RAD in the realm of next-generation sequencing technologies. Molecular Ecology 20:3499-3502.
24. SAS Institute INC. 1989. SAS/STAT Users Guide, Version 6, Fourth Edition, Vol. 2, SAS Institute Inc., Cary, N.C.
25. Soto-Cerda, B.J. and Cloutier, S. 2012. Association Mapping in Plant Genomes. In: Caliskan, M. (ed.), Genetic Diversity in Plants, InTech.
26. Tang, H., Bowers, J.E., Wang, X., Ming, R., Alam, M. and Paterson, A.H. 2008. Synteny and collinearity in plant genomes. Science 320:486-488.
27. Tijet, N., Waspi, U., Gaskin, D.J., Hunziker, P., Muller, B.L., Vulfson, E.N., Slusarenko, A., Brash, A.R. and Whitehead, I.M. 2000. Purification, molecular cloning, and expression of the gene encoding fatty acid 13-hydroperoxide lyase from guava fruit (Psidium guajava). Lipids 35:709-720.
28. Valdés-Infante, D., Becker, D., Rodríguez, N., Velázquez, B., González, G., Sourd, D., Rodríguez, J., Ritter, E. and Rohde, W. 2003. Molecular characterization of Cuban accessions of guava (Psidium guajava L.), establishment of a first molecular linkage map and mapping of QTLs for vegetative characters. J. Genet. & Breed. 57:349-358.
29. Varshney, R.K. and Dubey, A. 2009. Novel genomic tools and modern genetic and breeding approaches for crop improvement. J. Plant Biochem. Biot. 18:127-138.
30. Xu, P., Wu, X., Wang, B., Luo, J., Liu, Y., Ehlers, J.D., Close, T.J., Roberts, P.A., Lu, Z., Wang, S. and Li, G. 2012. Genome wide linkage disequilibrium in Chinese asparagus bean (Vigna unguiculata ssp. sesquipedialis) germplasm: implications for domestication history and genome wide association studies. Heredity, doi: 10.1038/hdy.2012.8. [Epub ahead of print].