Effect of cocirculation of highly pathogenic avian influenza H5N1 subtype with low pathogenic H9N2 subtype on the spread of infections

Avian Diseases

Volumn 56, Issue 4 SUPPL.1, 2012, Pages 849-857

  Arafa, Abdel Satar ^a   Hagag, Naglaa M ^a   Yehia, Nahed ^a   Zanaty, Aly M ^a   Naguib, Mahmoud M ^a   Nasef, Soad A ^a  

^a Agricultural Research Center   (Egypt)

Author keywords

cocirculation of AIV in Egypt; epizootiologic data analysis; genetic characterization; H5N1 subtype; H9N2 subtype; HA gene sequencing; highly pathogenic avian influenza; Low pathogenic avian influenza; phylogenetic analysis of Egyptian viruses

Indexed keywords

ANIMAL; AVIAN INFLUENZA; CHICKEN; CONFERENCE PAPER; EGYPT; GENETICS; INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS A H9N2; ISOLATION AND PURIFICATION; PHYLOGENY; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIROLOGY;

ANIMALS; CHICKENS; EGYPT; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA A VIRUS, H9N2 SUBTYPE; INFLUENZA IN BIRDS; PHYLOGENY; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

AVES; GALLUS GALLUS; PHASIANIDAE;

EID: 84871949957     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/10152-040812-Reg.1     Document Type: Conference Paper

References (41)

1. Aamir, U. B., U. Wernery, N. Ilyushina, and R. G. Webster. Characterization of avian H9N2 influenza viruses from United Arab Emirates 2000-2003. J. Virol. 361:45-55. 2007. (Pubitemid 46551216)
2. Abdel-Moneim, A. S., S. A. Shany, S. R. Fereidouni, B. T. Eid, M. F. el-Kady, E. Starick, T. Harder, and G. M. Keil. Sequence diversity of the haemagglutinin open reading frame of recent highly pathogenic avian influenza H5N1 isolates from Egypt. Arch. Virol. 154:1559-1562. 2009.
3. Abdelwhab, E. M., and M. H. Hafez. An overview of the epidemic of highly pathogenic H5N1 avian influenza virus in Egypt: epidemiology and control challenges. Review Article, Epidemiol. Infect. 139:647-657. 2011.
4. Alexander, D. J. An overview of the epidemiology of avian influenza. Vaccine 25:5637-5644. 2007. (Pubitemid 47031360)
5. Aly, M. M., A. Arafa, and M. K. Hassan. Epidemiological findings of outbreaks of disease caused by highly pathogenic H5N1 avian influenza virus in poultry in Egypt during 2006. Avian Dis. 52:269-277. 2008. (Pubitemid 351883741)
6. Arafa, A., D. L. Suarez, M. K. Hassan, and M. M. Aly. Phylogenetic analysis of HA and NA genes of HPAI-H5N1 Egyptian viruses isolated from 2006 to 2008 indicates heterogeneity with multiple distinct sublineages. Avian Dis. 54:345-349. 2010.
7. Bano, S., K. Naeem, and S. A. Malik. Evaluation of pathogenic potential of avian influenza virus serotype H9N2 in chickens. Avian Dis. 47:817-822. 2003. (Pubitemid 37143842)
8. Cameron, K. R., V. Gregory, J. Banks, I. H. Brown, D. J. Alexander, A. J. Hay, and Y. P. Lin. H9N2 subtype influenza A viruses in poultry in Pakistan are closely related to the H9N2 viruses responsible for human infection in Hong Kong. Virology 278:36-41. 2000. (Pubitemid 32002591)
9. Choi, Y. K., H. Ozaki, R. J. Webby, R. G. Webster, J. S. Peiris, L. Poon, C. Butt, Y. H. Leung, and Y. Guan. Continuing evolution of H9N2 influenza viruses in Southeastern China. J. Virol. 78:8609-8614. 2004. (Pubitemid 39025127)
10. Dong, G., J. Luo, H. Zhang, C. Wang, M. Duan, T. J. Deliberto, D. L. Nolte, G. Ji, and H. He. Phylogenetic diversity and genotypical complexity of H9N2 influenza A viruses revealed by genomic sequence analysis. PLoS One 2011, 6:e17212. 2011.
11. El-Zoghby, E. F., A. Arafa, M. K. Hassan, M. M. Aly, A. Selim, W. H. Kilany, U. Selim, S. Nasef, M. G. Aggor, E. M. Abdelwhab, and M. H. Hafez. Isolation of H9N2 avian influenza virus from bobwhite quail (Colinus virginianus) in Egypt. Arch. Virol. DOI 10.1007/s00705-012-1269-z. 2012.
12. Ge, F. F., J. P. Zhou, J. Liu, J. Wang, W. Y. Zhang, L. P. Sheng, F. Xu, H. B. Ju, Q. Y. Sun, and P. H. Liu. Genetic evolution of H9 subtype influenza viruses from live poultry markets in Shanghai, China. J. Clin. Microbiol. 47:3294-3300. 2009.
13. Golender, N., A. Panshin, C. Banet-Noach, S. Nagar, S. Pokamunski, M. Pirak, Y. Tendler, I. Davidson, M. Garcia, and S. Perk. Genetic characterization of avian influenza viruses isolated in Israel during 2000-2006. Virus Genes 37:289-297. 2008.
14. Guan, Y., K. F. Shortridge, S. Krauss, and R. G. Webster. Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proc. Natl. Acad. Sci. U. S. A. 96:9363-9367. 1999. (Pubitemid 29374760)
15. Hafez, M. H., A. Arafa, E. M. Abdelwhab, A. Selim, S. G. Khoulosy, M. K. Hassan, and M. M. Aly. Avian influenza H5N1 virus infections in vaccinated commercial and backyard poultry in Egypt. Poult. Sci. 2010. 89:1609-1613. doi:10.3382/ps.2010-00708. 2010.
16. Haghighat-Jahromi, M., K. Asasi, H. Nili, H. Dadras, and A. H. Shooshtari. Coinfection of avian influenza virus (H9N2 subtype) with infectious bronchitis live vaccine. Arch. Virol. 153:651-655. 2008.
17. Hoffmann, E., J. Stech, Y. Guan, R. G. Webster, and D. R. Perez. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146:2275-2289. 2001. (Pubitemid 34682391)
18. Huang, Y., B. Hu, X. Wen, S. Cao, B. K. Gavrilov, Q. Du, M. I. Khan, and X. Zhang. Diversified reassortant H9N2 avian influenza viruses in chicken flocks in northern and eastern China. Virus Res. 151:26-32. 2010.
19. Iqbal, M., T. Yaqub, K. Reddy, and J. W. McCauley. Novel genotypes of H9N2 influenza A viruses isolated from poultry in Pakistan containing NS genes similar to highly pathogenic H7N3 and H5N1 viruses. (A. Garcia-Sastre, Ed.) PLoS ONE 4(6):18. 2009.
20. Khalenkov, A., S. Perk, A. Panshin, N. Golender, and R. G. Webster. Modulation of the severity of highly pathogenic H5N1 influenza in chickens previously inoculated with Israeli H9N2 influenza viruses. Virology 383: 32-38. 2009.
21. Kim, J. A., S. H. Cho, H. S. Kim, and S. H. Seo. H9N2 influenza viruses isolated from poultry in Korean live bird markets continuously evolve and cause the severe clinical signs in layers. Vet. Microbiol. 118:169-176. 2006. (Pubitemid 44750493)
22. Kishida, N., Y. Sakoda, M. Eto, Y. Sunaga, and H. Kida. Coinfection of Staphylococcus aureus or Haemophilus paragallinarum exacerbates H9N2 influenza A virus infection in chickens. Arch. Virol. 149:2095-2104. 2004. (Pubitemid 39508952)
23. Lee, C. W., D. A. Senne, and D. L. Suarez. Effect of vaccine use in the evolution of Mexican lineage H5N2 avian influenza virus. J. Virol. 78:8372-8381. 2004. (Pubitemid 38944321)
24. Li, C., K. Yu, G. Tian, D. Yu, L. Liu, B. Jing, J. Ping, and H. Chen. Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology 340:70-83. 2005. (Pubitemid 41191179)
25. Monne, I., S. Ormelli, A. Salviato, C. De Battisti, F. Bettini, A. Salomoni, A. Drago, B. Zecchin, I. Capua, and G. Cattoli. Development and validation of a one-step real-time PCR assay for simultaneous detection of subtype H5, H7, and H9 avian influenza viruses. J. Clin. Microbiol. 46:1769-1773. 2008. (Pubitemid 351657227)
26. Naeem, K., N. Siddique, M. Ayaz, and M. A. Jalalee. Avian influenza in Pakistan: outbreaks of low-and high-pathogenicity avian influenza in Pakistan during 2003-2006. Avian Dis. 51(1 Suppl.):189-193. 2007. (Pubitemid 46671278)
27. Negovetich, N. J., M. M. Feeroz, L. Jones-Engel, D. Walker, S. M. R. Alam, K. Hasan, P. Seiler, A. Ferguson, K. Friedman, S. Barman, J. Franks, J. Turner, S. Krauss, R. J. Webby, and R. G. Webster. Live bird markets of Bangladesh: H9N2 viruses and the near absence of highly pathogenic H5N1 influenza. (E. E. Ooi, Ed.) PLoS ONE 6(4):8. 2011.
28. Nili, H., and K. Asasi. Natural cases and an experimental study of H9N2 avian influenza in commercial broiler chickens of Iran. Avian Pathol. 31:247-252. 2002. (Pubitemid 34635147)
29. Park, K. J., H. I. Kwon, M. S. Song, P. N. Pascua, Y. H. Baek, J. H. Lee, H. L. Jang, J. Y. Lim, I. P. Mo, H. J. Moon, C. J. Kim, and Y. K. Choi. Rapid evolution of low-pathogenic H9N2 avian influenza viruses following poultry vaccination programmes. J. Gen. Virol. 92:36-50. 2011.
30. Perk, S., N. Golender, C. Banet, E. Shihmanter, M. Pirak, Y. Tendler, M. Lipkind, and A. Panish. Phylogenetic analysis of hemagglutinin, neuraminidase, and nucleoprotein genes of H9N2 avian influenza viruses isolated in Israel during the 2000-2005 epizootic. Comparative Immunol. Microbiol. Infectious Dis. 32:221-238. 2009.
31. Pfeiffer, J., M. Pantin-Jackwood, T. L. To, T. Nguyen, and D. L. Suarez. Phylogenetic and biological characterization of highly pathogenic H5N1 avian influenza viruses (Vietnam 2005) in chickens and ducks. Virus Res. 142:108-120. 2009.
32. Salzberg, S. L., C. Kingsford, G. Cattoli, D. J. Spiro, D. A. Janies, M. M. Aly, I. H. Brown, E. Couacy-Hymann, G. M. De Mia, H. Dung Do, A. Guercio, T. Joannis, A. S. Maken Ali, A. Osmani, I. Padalino, M. D. Saad, V. Savic, N. A. Sengamalay, S. Yingst, J. Zaborsky, O. Zorman-Rojs, E. Ghedin, and I. Capua. Genome analysis linking recent European and African influenza (H5N1) viruses. Emerg. Infect. Dis. 13:713-718. 2007. (Pubitemid 46705305)
33. Seo, S. H., and R. G. Webster. Cross-reactive, cell-mediated immunity and protection of chickens from lethal H5N1 influenza virus infection in Hong Kong poultry markets. J. Virol. 75:2516-2525. 2001. (Pubitemid 32185015)
34. Shortridge, K. F., N. N. Zhou, Y. Guan, P. Gao, T. Ito, Y. Kawaoka, S. Kodihalli, S. Krauss, D. Markwell, K. G. Murti, M. Norwood, D. Senne, L. Sims, A. Takada, and R. G. Webster. Characterization of avian H5N1 influenza viruses from poultry in Hong Kong. Virology 252:331-342. 1998. (Pubitemid 29013415)
35. Slomka, M. J., T. Pavlidis, J. Banks, W. Shell, A. McNally, S. Essen, and I. H. Brown. Validated H5 Eurasian real-time reverse transcriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006. Avian Dis. 51:373-377. 2007. (Pubitemid 46671312)
36. Spackman, E., D. A. Senne, T. J. Myers, L. L. Bulaga, L. P. Garber, M. L. Perdue, K. Lohman, L. T. Daum, and D. L. Suarez. Development of a realtime reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J. Clin. Microbiol. 40:3256-3260. 2002. (Pubitemid 34977437)
37. Sun, Y., J. Pu, Z. Jiang, T. Guan, Y. Xia, Q. Xu, L. Liu, B. Ma, F. Tian, E. G. Brown, and J. Liu. Genotypic evolution and antigenic drift of H9N2 influenza viruses in China from 1994 to 2008. Vet. Microbiol. 146:215-225. 2010.
38. Tamura, K., J. Dudley, M. Nei, and S. Kumar. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599. 2007. (Pubitemid 47236692)
39. [WHO/OIE/FAO] World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization, H5N1 Evolution Working Group. 2011. Letter to the Editor: Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza and Other Respiratory Viruses 6:1-5. 2012.
40. Xu, K. M., G. J. Smith, J. Bahl, L. Duan, H. Tai, D. Vijaykrishna, J. Wang, J. X. Zhang, K. S. Li, X. H. Fan, R. G. Webster, H. Chen, J. S. M. Peiris, and Y. Guan. The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005. J. Virol. 81:10389-10401. 2007. (Pubitemid 47463313)
41. Zhang, P., Y. Tang, X. Liu, W. Liu, X. Zhang, H. Liu, D. Peng, S. Gao, Y. Wu, L. Zhang, S. Lu, and X. Liu. A novel genotype H9N2 influenza virus possessing human H5N1 internal genomes has been circulating in poultry in eastern China since 1998. J. Virol. 83:8428-8438. 2009.